HEADER ISOMERASE, PROTEIN BINDING 28-FEB-19 6O49 TITLE CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE TITLE 2 FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF339 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN SMT3,PEPTIDYL-PROLYL CIS-TRANS COMPND 3 ISOMERASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE, BURKHOLDERIA SOURCE 3 PSEUDOMALLEI (STRAIN 1710B); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292, 320372; SOURCE 6 STRAIN: ATCC 204508 / S288C, 1710B; SOURCE 7 GENE: SMT3, YDR510W, D9719.15, BURPS1710B_A0907; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28-HISSMT KEYWDS PEPTIDYL, PROLINE, ISOMERASE, SSGCID, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 03-APR-24 6O49 1 REMARK REVDAT 2 13-MAR-24 6O49 1 LINK REVDAT 1 12-FEB-20 6O49 0 JRNL AUTH J.IWASAKI,D.D.LORIMER,M.VIVOLI,N.J.HARMER,E.A.KIBBLE, JRNL AUTH 2 C.S.PEACOCK,J.ABENDROTH,S.J.MAYCLIN,D.M.DRANOW,P.G.PIERCE, JRNL AUTH 3 D.FOX III,M.LEWIS,N.BZDYL,S.KRISTENSEN,J.W.SCHMIDBERGER, JRNL AUTH 4 C.B.BOND,F.SEUFERT,J.SCHMITZ,I.H.NORVILLE,P.J.MYLER, JRNL AUTH 5 U.HOLZGRABE,M.SARKAR-TYSON JRNL TITL CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS JRNL TITL 2 ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH JRNL TITL 3 SF339 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 31909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.9000 - 1.8500 0.80 1738 107 0.2792 0.3554 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3070 REMARK 3 ANGLE : 0.766 4159 REMARK 3 CHIRALITY : 0.055 450 REMARK 3 PLANARITY : 0.005 543 REMARK 3 DIHEDRAL : 20.633 1804 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -74.3612 -30.1774 164.2735 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: 0.1230 REMARK 3 T33: 0.0977 T12: 0.0158 REMARK 3 T13: -0.0143 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.5060 L22: 1.4045 REMARK 3 L33: 1.8910 L12: 0.3262 REMARK 3 L13: -0.1743 L23: -0.3640 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: -0.1618 S13: -0.0053 REMARK 3 S21: 0.0692 S22: 0.0187 S23: 0.0369 REMARK 3 S31: 0.0131 S32: -0.1844 S33: -0.0496 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -76 THROUGH -27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -66.1058 -21.3724 122.0027 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.1770 REMARK 3 T33: 0.1591 T12: 0.0252 REMARK 3 T13: 0.0062 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 5.1295 L22: 3.3726 REMARK 3 L33: 4.2464 L12: -1.0784 REMARK 3 L13: 1.1022 L23: 0.2593 REMARK 3 S TENSOR REMARK 3 S11: 0.2813 S12: 0.4013 S13: 0.0887 REMARK 3 S21: -0.4290 S22: -0.2944 S23: -0.1844 REMARK 3 S31: 0.0219 S32: 0.0353 S33: 0.0170 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -26 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.8701 -33.4198 121.9760 REMARK 3 T TENSOR REMARK 3 T11: 0.2141 T22: 0.2255 REMARK 3 T33: 0.1106 T12: 0.0507 REMARK 3 T13: 0.0015 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.1946 L22: 2.5306 REMARK 3 L33: 1.2351 L12: -0.2889 REMARK 3 L13: -0.0223 L23: -0.7495 REMARK 3 S TENSOR REMARK 3 S11: 0.0683 S12: 0.2820 S13: 0.0261 REMARK 3 S21: -0.3566 S22: -0.1734 S23: -0.1969 REMARK 3 S31: -0.1377 S32: -0.1226 S33: 0.0482 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -72.6352 -40.3809 141.1024 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.0655 REMARK 3 T33: 0.1026 T12: 0.0026 REMARK 3 T13: -0.0241 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.2904 L22: 1.3355 REMARK 3 L33: 1.3759 L12: -0.3119 REMARK 3 L13: 0.1508 L23: 0.0978 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: 0.0777 S13: 0.0997 REMARK 3 S21: 0.0433 S22: -0.0127 S23: 0.0550 REMARK 3 S31: -0.0955 S32: -0.0320 S33: 0.0471 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -76 THROUGH -5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -75.0781 -50.4601 185.6737 REMARK 3 T TENSOR REMARK 3 T11: 0.3402 T22: 0.3766 REMARK 3 T33: 0.1465 T12: 0.0700 REMARK 3 T13: 0.0746 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 3.5078 L22: 5.9246 REMARK 3 L33: 2.3930 L12: 0.7528 REMARK 3 L13: 2.1696 L23: 1.1514 REMARK 3 S TENSOR REMARK 3 S11: 0.2344 S12: 0.1006 S13: 0.1575 REMARK 3 S21: 0.0393 S22: -0.1743 S23: -0.1212 REMARK 3 S31: -0.3932 S32: -0.3129 S33: -0.0329 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000239990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31913 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 48.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.212 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.98 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: BE4 MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BUPSA.00130.A.D21 (CID4597, SMT TAG REMARK 280 ON, BATCH 1264062) AT 10.37MG/ML (IN 25MM TRIS, PH8.0, 200MM REMARK 280 NACL, 1% GLYCEROL, 1MM TCEP BUFFER) WAS INCUBATED WITH 2MM SF339_ REMARK 280 S (BSI5671). CRYSTALS WERE PRODUCED BY SITTING DROP VAPOR REMARK 280 DIFFUSION WITH AN EQUAL VOLUME COMBINATION OF THE PROTEIN/LIGAND REMARK 280 COMPLEX AND A SOLUTION CONTAINING 100 MM MES PH 6.0, 200 MM REMARK 280 CALCIUM CHLORIDE DEHYDRATE, 20% PEG6000 (PACT B11). CRYSTAL REMARK 280 TRACKING ID 297348B11, IZS6-2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.80000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -95 REMARK 465 GLY A -94 REMARK 465 HIS A -93 REMARK 465 HIS A -92 REMARK 465 HIS A -91 REMARK 465 HIS A -90 REMARK 465 HIS A -89 REMARK 465 HIS A -88 REMARK 465 SER A -87 REMARK 465 GLY A -86 REMARK 465 GLU A -85 REMARK 465 VAL A -84 REMARK 465 LYS A -83 REMARK 465 PRO A -82 REMARK 465 GLU A -81 REMARK 465 VAL A -80 REMARK 465 LYS A -79 REMARK 465 PRO A -78 REMARK 465 MET B -95 REMARK 465 GLY B -94 REMARK 465 HIS B -93 REMARK 465 HIS B -92 REMARK 465 HIS B -91 REMARK 465 HIS B -90 REMARK 465 HIS B -89 REMARK 465 HIS B -88 REMARK 465 SER B -87 REMARK 465 GLY B -86 REMARK 465 GLU B -85 REMARK 465 VAL B -84 REMARK 465 LYS B -83 REMARK 465 PRO B -82 REMARK 465 GLU B -81 REMARK 465 VAL B -80 REMARK 465 LYS B -79 REMARK 465 PRO B -78 REMARK 465 GLY B -41 REMARK 465 LYS B -40 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -77 CG CD OE1 OE2 REMARK 470 LYS A -40 CG CD CE NZ REMARK 470 GLU A -19 CG CD OE1 OE2 REMARK 470 ASP A -16 CG OD1 OD2 REMARK 470 GLU A -8 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLU B -77 CG CD OE1 OE2 REMARK 470 LYS B -71 CG CD CE NZ REMARK 470 ASP B -68 CG OD1 OD2 REMARK 470 SER B -65 OG REMARK 470 GLU B -64 CG CD OE1 OE2 REMARK 470 PHE B -62 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B -58 CG CD CE NZ REMARK 470 LYS B -44 CG CD CE NZ REMARK 470 GLN B -42 CG CD OE1 NE2 REMARK 470 GLU B -39 CG CD OE1 OE2 REMARK 470 ASP B -37 CG OD1 OD2 REMARK 470 ASP B -30 CG OD1 OD2 REMARK 470 ASP B -16 CG OD1 OD2 REMARK 470 GLU B -14 CG CD OE1 OE2 REMARK 470 GLU B -8 CG CD OE1 OE2 REMARK 470 GLU B -4 CG CD OE1 OE2 REMARK 470 ILE B -2 CG1 CG2 CD1 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 371 O HOH A 430 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 411 O HOH B 419 1545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B -4 118.92 -169.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 ASP A 51 OD2 50.8 REMARK 620 3 PRO A 52 O 97.5 89.1 REMARK 620 4 HOH A 395 O 119.0 68.7 87.4 REMARK 620 5 ASP B 51 OD1 156.9 152.0 88.6 83.4 REMARK 620 6 PRO B 52 O 85.3 89.6 175.1 87.7 90.2 REMARK 620 7 HOH B 372 O 84.3 134.4 90.2 156.7 73.4 94.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 376 O REMARK 620 2 HOH A 414 O 88.6 REMARK 620 3 HOH A 449 O 84.6 77.3 REMARK 620 4 ASP B 112 OD1 93.5 148.9 133.8 REMARK 620 5 VAL B 113 O 172.1 93.8 88.6 88.3 REMARK 620 6 HOH B 304 O 92.9 146.2 69.3 64.7 80.9 REMARK 620 7 HOH B 318 O 92.3 73.6 150.8 75.4 95.6 140.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LL7 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LL7 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUPSA.00130.A RELATED DB: TARGETTRACK DBREF 6O49 A -85 0 UNP Q12306 SMT3_YEAST 13 98 DBREF 6O49 A 2 113 UNP Q3JK38 Q3JK38_BURP1 2 113 DBREF 6O49 B -85 0 UNP Q12306 SMT3_YEAST 13 98 DBREF 6O49 B 2 113 UNP Q3JK38 Q3JK38_BURP1 2 113 SEQADV 6O49 MET A -95 UNP Q12306 INITIATING METHIONINE SEQADV 6O49 GLY A -94 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS A -93 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS A -92 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS A -91 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS A -90 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS A -89 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS A -88 UNP Q12306 EXPRESSION TAG SEQADV 6O49 SER A -87 UNP Q12306 EXPRESSION TAG SEQADV 6O49 GLY A -86 UNP Q12306 EXPRESSION TAG SEQADV 6O49 SER A 1 UNP Q12306 LINKER SEQADV 6O49 MET B -95 UNP Q12306 INITIATING METHIONINE SEQADV 6O49 GLY B -94 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS B -93 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS B -92 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS B -91 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS B -90 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS B -89 UNP Q12306 EXPRESSION TAG SEQADV 6O49 HIS B -88 UNP Q12306 EXPRESSION TAG SEQADV 6O49 SER B -87 UNP Q12306 EXPRESSION TAG SEQADV 6O49 GLY B -86 UNP Q12306 EXPRESSION TAG SEQADV 6O49 SER B 1 UNP Q12306 LINKER SEQRES 1 A 209 MET GLY HIS HIS HIS HIS HIS HIS SER GLY GLU VAL LYS SEQRES 2 A 209 PRO GLU VAL LYS PRO GLU THR HIS ILE ASN LEU LYS VAL SEQRES 3 A 209 SER ASP GLY SER SER GLU ILE PHE PHE LYS ILE LYS LYS SEQRES 4 A 209 THR THR PRO LEU ARG ARG LEU MET GLU ALA PHE ALA LYS SEQRES 5 A 209 ARG GLN GLY LYS GLU MET ASP SER LEU ARG PHE LEU TYR SEQRES 6 A 209 ASP GLY ILE ARG ILE GLN ALA ASP GLN THR PRO GLU ASP SEQRES 7 A 209 LEU ASP MET GLU ASP ASN ASP ILE ILE GLU ALA HIS ARG SEQRES 8 A 209 GLU GLN ILE GLY GLY SER THR VAL VAL THR THR GLU SER SEQRES 9 A 209 GLY LEU LYS TYR GLU ASP LEU THR GLU GLY SER GLY ALA SEQRES 10 A 209 GLU ALA ARG ALA GLY GLN THR VAL SER VAL HIS TYR THR SEQRES 11 A 209 GLY TRP LEU THR ASP GLY GLN LYS PHE ASP SER SER LYS SEQRES 12 A 209 ASP ARG ASN ASP PRO PHE ALA PHE VAL LEU GLY GLY GLY SEQRES 13 A 209 MET VAL ILE LYS GLY TRP ASP GLU GLY VAL GLN GLY MET SEQRES 14 A 209 LYS VAL GLY GLY VAL ARG ARG LEU THR ILE PRO PRO GLN SEQRES 15 A 209 LEU GLY TYR GLY ALA ARG GLY ALA GLY GLY VAL ILE PRO SEQRES 16 A 209 PRO ASN ALA THR LEU VAL PHE GLU VAL GLU LEU LEU ASP SEQRES 17 A 209 VAL SEQRES 1 B 209 MET GLY HIS HIS HIS HIS HIS HIS SER GLY GLU VAL LYS SEQRES 2 B 209 PRO GLU VAL LYS PRO GLU THR HIS ILE ASN LEU LYS VAL SEQRES 3 B 209 SER ASP GLY SER SER GLU ILE PHE PHE LYS ILE LYS LYS SEQRES 4 B 209 THR THR PRO LEU ARG ARG LEU MET GLU ALA PHE ALA LYS SEQRES 5 B 209 ARG GLN GLY LYS GLU MET ASP SER LEU ARG PHE LEU TYR SEQRES 6 B 209 ASP GLY ILE ARG ILE GLN ALA ASP GLN THR PRO GLU ASP SEQRES 7 B 209 LEU ASP MET GLU ASP ASN ASP ILE ILE GLU ALA HIS ARG SEQRES 8 B 209 GLU GLN ILE GLY GLY SER THR VAL VAL THR THR GLU SER SEQRES 9 B 209 GLY LEU LYS TYR GLU ASP LEU THR GLU GLY SER GLY ALA SEQRES 10 B 209 GLU ALA ARG ALA GLY GLN THR VAL SER VAL HIS TYR THR SEQRES 11 B 209 GLY TRP LEU THR ASP GLY GLN LYS PHE ASP SER SER LYS SEQRES 12 B 209 ASP ARG ASN ASP PRO PHE ALA PHE VAL LEU GLY GLY GLY SEQRES 13 B 209 MET VAL ILE LYS GLY TRP ASP GLU GLY VAL GLN GLY MET SEQRES 14 B 209 LYS VAL GLY GLY VAL ARG ARG LEU THR ILE PRO PRO GLN SEQRES 15 B 209 LEU GLY TYR GLY ALA ARG GLY ALA GLY GLY VAL ILE PRO SEQRES 16 B 209 PRO ASN ALA THR LEU VAL PHE GLU VAL GLU LEU LEU ASP SEQRES 17 B 209 VAL HET LL7 A 201 72 HET CA A 202 1 HET EDO A 203 4 HET LL7 B 201 36 HET CA B 202 1 HET EDO B 203 4 HET EDO B 204 4 HETNAM LL7 (2~{S})-~{N}-[3-OXIDANYLIDENE-3-[(3,4,5- HETNAM 2 LL7 TRIMETHOXYPHENYL)AMINO]PROPYL]-1-(PHENYLMETHYL) HETNAM 3 LL7 SULFONYL-PIPERIDINE-2-CARBOXAMIDE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 LL7 2(C25 H33 N3 O7 S) FORMUL 4 CA 2(CA 2+) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 10 HOH *359(H2 O) HELIX 1 AA1 LEU A -53 GLN A -42 1 12 HELIX 2 AA2 GLU A -39 LEU A -35 5 5 HELIX 3 AA3 LYS A 47 ASN A 50 5 4 HELIX 4 AA4 ILE A 63 VAL A 70 1 8 HELIX 5 AA5 PRO A 84 GLY A 88 5 5 HELIX 6 AA6 PRO B -54 GLN B -42 1 13 HELIX 7 AA7 GLU B -39 ASP B -37 5 3 HELIX 8 AA8 ILE B 63 VAL B 70 1 8 HELIX 9 AA9 PRO B 84 GLY B 88 5 5 SHEET 1 AA1 5 GLU A -64 LYS A -58 0 SHEET 2 AA1 5 HIS A -75 SER A -69 -1 N VAL A -70 O ILE A -63 SHEET 3 AA1 5 ASP A -11 HIS A -6 1 O ILE A -9 N LYS A -71 SHEET 4 AA1 5 ARG A -34 TYR A -31 -1 N LEU A -32 O GLU A -8 SHEET 5 AA1 5 ILE A -28 ARG A -27 -1 O ILE A -28 N TYR A -31 SHEET 1 AA2 6 VAL A 3 THR A 5 0 SHEET 2 AA2 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 AA2 6 VAL A 78 ILE A 83 -1 O VAL A 78 N LEU A 15 SHEET 4 AA2 6 LEU A 104 ASP A 112 -1 O LEU A 104 N ILE A 83 SHEET 5 AA2 6 THR A 28 LEU A 37 -1 N TRP A 36 O VAL A 105 SHEET 6 AA2 6 LYS A 42 SER A 45 -1 O ASP A 44 N GLY A 35 SHEET 1 AA3 6 VAL A 3 THR A 5 0 SHEET 2 AA3 6 LYS A 11 THR A 16 -1 O TYR A 12 N VAL A 4 SHEET 3 AA3 6 VAL A 78 ILE A 83 -1 O VAL A 78 N LEU A 15 SHEET 4 AA3 6 LEU A 104 ASP A 112 -1 O LEU A 104 N ILE A 83 SHEET 5 AA3 6 THR A 28 LEU A 37 -1 N TRP A 36 O VAL A 105 SHEET 6 AA3 6 PHE A 53 VAL A 56 -1 O PHE A 53 N VAL A 31 SHEET 1 AA4 2 SER A 19 GLU A 22 0 SHEET 2 AA4 2 LYS A 74 VAL A 75 -1 O VAL A 75 N SER A 19 SHEET 1 AA5 5 GLU B -64 LYS B -58 0 SHEET 2 AA5 5 HIS B -75 SER B -69 -1 N LEU B -72 O PHE B -61 SHEET 3 AA5 5 ASP B -11 ARG B -5 1 O ILE B -9 N LYS B -71 SHEET 4 AA5 5 LEU B -35 TYR B -31 -1 N LEU B -32 O GLU B -8 SHEET 5 AA5 5 ILE B -28 ARG B -27 -1 O ILE B -28 N TYR B -31 SHEET 1 AA6 6 VAL B 4 THR B 5 0 SHEET 2 AA6 6 LYS B 11 THR B 16 -1 O TYR B 12 N VAL B 4 SHEET 3 AA6 6 VAL B 78 ILE B 83 -1 O ARG B 80 N GLU B 13 SHEET 4 AA6 6 LEU B 104 ASP B 112 -1 O LEU B 104 N ILE B 83 SHEET 5 AA6 6 THR B 28 LEU B 37 -1 N HIS B 32 O GLU B 109 SHEET 6 AA6 6 LYS B 42 SER B 45 -1 O ASP B 44 N GLY B 35 SHEET 1 AA7 6 VAL B 4 THR B 5 0 SHEET 2 AA7 6 LYS B 11 THR B 16 -1 O TYR B 12 N VAL B 4 SHEET 3 AA7 6 VAL B 78 ILE B 83 -1 O ARG B 80 N GLU B 13 SHEET 4 AA7 6 LEU B 104 ASP B 112 -1 O LEU B 104 N ILE B 83 SHEET 5 AA7 6 THR B 28 LEU B 37 -1 N HIS B 32 O GLU B 109 SHEET 6 AA7 6 PHE B 53 VAL B 56 -1 O PHE B 53 N VAL B 31 LINK OD1 ASP A 51 CA CA A 202 1555 1555 2.40 LINK OD2 ASP A 51 CA CA A 202 1555 1555 2.68 LINK O PRO A 52 CA CA A 202 1555 1555 2.31 LINK CA CA A 202 O HOH A 395 1555 1555 2.35 LINK CA CA A 202 OD1 ASP B 51 1555 1555 2.33 LINK CA CA A 202 O PRO B 52 1555 1555 2.31 LINK CA CA A 202 O HOH B 372 1555 1555 2.49 LINK O HOH A 376 CA CA B 202 2458 1555 2.36 LINK O HOH A 414 CA CA B 202 1565 1555 2.48 LINK O HOH A 449 CA CA B 202 1565 1555 2.60 LINK OD1 ASP B 112 CA CA B 202 1555 1555 2.40 LINK O VAL B 113 CA CA B 202 1555 1555 2.36 LINK CA CA B 202 O HOH B 304 1555 1555 2.51 LINK CA CA B 202 O HOH B 318 1555 1555 2.37 SITE 1 AC1 18 TYR A 33 PHE A 43 ASP A 44 PHE A 53 SITE 2 AC1 18 MET A 61 VAL A 62 ILE A 63 TRP A 66 SITE 3 AC1 18 TYR A 89 ALA A 94 GLY A 95 VAL A 97 SITE 4 AC1 18 PHE A 106 HOH A 303 HOH A 349 HOH A 433 SITE 5 AC1 18 HOH A 455 LL7 B 201 SITE 1 AC2 6 ASP A 51 PRO A 52 HOH A 395 ASP B 51 SITE 2 AC2 6 PRO B 52 HOH B 372 SITE 1 AC3 8 GLY A 58 ASP A 67 GLU A 68 GLN A 71 SITE 2 AC3 8 HOH A 310 HOH A 336 HOH A 342 HOH A 370 SITE 1 AC4 17 LL7 A 201 HOH A 303 TYR B 33 PHE B 43 SITE 2 AC4 17 ASP B 44 PHE B 53 VAL B 62 ILE B 63 SITE 3 AC4 17 TRP B 66 TYR B 89 GLY B 95 VAL B 97 SITE 4 AC4 17 ILE B 98 PHE B 106 HOH B 312 HOH B 363 SITE 5 AC4 17 HOH B 375 SITE 1 AC5 6 HOH A 414 HOH A 449 ASP B 112 VAL B 113 SITE 2 AC5 6 HOH B 304 HOH B 318 SITE 1 AC6 5 GLN B 86 GLY B 88 GLY B 90 HOH B 301 SITE 2 AC6 5 HOH B 398 SITE 1 AC7 3 ARG B 92 HOH B 333 HOH B 431 CRYST1 58.860 33.600 98.140 90.00 101.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016989 0.000000 0.003367 0.00000 SCALE2 0.000000 0.029762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010388 0.00000