HEADER PROTEIN BINDING 03-MAR-19 6O5I TITLE MENIN IN COMPLEX WITH MI-3454 CAVEAT 6O5I RESIDUES VAL A 53 AND GLY A 74 ARE LINKED TOGETHER IN THE CAVEAT 2 6O5I MODEL; HOWEVER, THERE ARE RESIDUES BETWEEN THEM IN THE CAVEAT 3 6O5I DEPOSITED POLYMERIC SEQUENCE RESIDUES GLY A 386 AND SER A CAVEAT 4 6O5I 399 ARE LINKED TOGETHER IN THE MODEL; HOWEVER, THERE ARE CAVEAT 5 6O5I RESIDUES BETWEEN THEM IN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MENIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEN1, SCG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MENIN-INHIBITOR COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.M.LINHARES,S.KLOSSOWSKI,T.CIERPICKI,J.GREMBECKA REVDAT 4 11-OCT-23 6O5I 1 REMARK REVDAT 3 19-FEB-20 6O5I 1 JRNL REVDAT 2 05-FEB-20 6O5I 1 JRNL REVDAT 1 08-JAN-20 6O5I 0 JRNL AUTH S.KLOSSOWSKI,H.MIAO,K.KEMPINSKA,T.WU,T.PUROHIT,E.KIM, JRNL AUTH 2 B.M.LINHARES,D.CHEN,G.JIH,E.PERKEY,H.HUANG,M.HE,B.WEN, JRNL AUTH 3 Y.WANG,K.YU,S.C.LEE,G.DANET-DESNOYERS,W.TROTMAN,M.KANDARPA, JRNL AUTH 4 A.COTTON,O.ABDEL-WAHAB,H.LEI,Y.DOU,M.GUZMAN,L.PETERSON, JRNL AUTH 5 T.GRUBER,S.CHOI,D.SUN,P.REN,L.S.LI,Y.LIU,F.BURROWS, JRNL AUTH 6 I.MAILLARD,T.CIERPICKI,J.GREMBECKA JRNL TITL MENIN INHIBITOR MI-3454 INDUCES REMISSION IN MLL1-REARRANGED JRNL TITL 2 AND NPM1-MUTATED MODELS OF LEUKEMIA. JRNL REF J.CLIN.INVEST. V. 130 981 2020 JRNL REFN ISSN 0021-9738 JRNL PMID 31855575 JRNL DOI 10.1172/JCI129126 REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.363 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 138480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.983 REMARK 3 FREE R VALUE TEST SET COUNT : 6900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7517 - 3.8508 0.99 4682 241 0.1556 0.1737 REMARK 3 2 3.8508 - 3.0576 1.00 4527 224 0.1247 0.1811 REMARK 3 3 3.0576 - 2.6714 1.00 4499 220 0.1392 0.1792 REMARK 3 4 2.6714 - 2.4273 1.00 4449 222 0.1307 0.1620 REMARK 3 5 2.4273 - 2.2534 1.00 4439 239 0.1211 0.1533 REMARK 3 6 2.2534 - 2.1206 1.00 4393 254 0.1112 0.1403 REMARK 3 7 2.1206 - 2.0144 1.00 4420 245 0.1106 0.1563 REMARK 3 8 2.0144 - 1.9267 1.00 4391 233 0.1094 0.1447 REMARK 3 9 1.9267 - 1.8526 1.00 4427 208 0.1079 0.1628 REMARK 3 10 1.8526 - 1.7887 1.00 4403 227 0.1028 0.1322 REMARK 3 11 1.7887 - 1.7327 1.00 4375 220 0.1001 0.1401 REMARK 3 12 1.7327 - 1.6832 1.00 4364 246 0.0940 0.1352 REMARK 3 13 1.6832 - 1.6389 1.00 4338 245 0.0934 0.1440 REMARK 3 14 1.6389 - 1.5989 1.00 4371 259 0.0931 0.1383 REMARK 3 15 1.5989 - 1.5626 1.00 4399 200 0.0984 0.1268 REMARK 3 16 1.5626 - 1.5293 1.00 4346 240 0.1019 0.1350 REMARK 3 17 1.5293 - 1.4987 1.00 4365 217 0.1027 0.1559 REMARK 3 18 1.4987 - 1.4705 1.00 4383 236 0.1125 0.1617 REMARK 3 19 1.4705 - 1.4442 1.00 4346 194 0.1224 0.1624 REMARK 3 20 1.4442 - 1.4197 1.00 4356 244 0.1248 0.1728 REMARK 3 21 1.4197 - 1.3968 1.00 4349 229 0.1279 0.1727 REMARK 3 22 1.3968 - 1.3753 1.00 4356 235 0.1330 0.1895 REMARK 3 23 1.3753 - 1.3551 1.00 4383 201 0.1364 0.1718 REMARK 3 24 1.3551 - 1.3360 1.00 4346 233 0.1404 0.1923 REMARK 3 25 1.3360 - 1.3180 1.00 4358 235 0.1507 0.1877 REMARK 3 26 1.3180 - 1.3008 1.00 4332 252 0.1598 0.2069 REMARK 3 27 1.3008 - 1.2846 1.00 4271 230 0.1714 0.2186 REMARK 3 28 1.2846 - 1.2691 1.00 4385 222 0.1840 0.2265 REMARK 3 29 1.2691 - 1.2543 1.00 4359 222 0.1968 0.1926 REMARK 3 30 1.2543 - 1.2403 0.96 4168 227 0.2214 0.2525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.108 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.936 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3898 REMARK 3 ANGLE : 1.315 5314 REMARK 3 CHIRALITY : 0.091 585 REMARK 3 PLANARITY : 0.008 673 REMARK 3 DIHEDRAL : 17.906 1399 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138482 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4X5Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M HEPES, PH REMARK 280 7.5, 25% (W/V) PEG-3,350., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.54600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.13050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.92150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.13050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.54600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.92150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 537 REMARK 465 PRO A 538 REMARK 465 ALA A 539 REMARK 465 PRO A 540 REMARK 465 THR A 541 REMARK 465 ALA A 542 REMARK 465 SER A 543 REMARK 465 PRO A 544 REMARK 465 PRO A 545 REMARK 465 PRO A 546 REMARK 465 GLU A 547 REMARK 465 GLY A 548 REMARK 465 LYS A 589 REMARK 465 GLN A 590 REMARK 465 LYS A 591 REMARK 465 VAL A 592 REMARK 465 SER A 593 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 2 O REMARK 470 LYS A 4 CD CE NZ REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 SER A 132 OG REMARK 470 ARG A 137 CZ NH1 NH2 REMARK 470 LYS A 151 CE NZ REMARK 470 ARG A 171 NE CZ NH1 NH2 REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LEU A 249 CG CD1 CD2 REMARK 470 ARG A 332 CZ NH1 NH2 REMARK 470 ARG A 355 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 362 CD CE NZ REMARK 470 GLN A 400 OE1 REMARK 470 THR A 429 CG2 REMARK 470 GLU A 448 CD OE1 OE2 REMARK 470 VAL A 458 CG1 REMARK 470 LYS A 562 CD CE NZ REMARK 470 GLU A 563 CG CD OE1 OE2 REMARK 470 THR A 568 CG2 REMARK 470 LYS A 569 CG CD CE NZ REMARK 470 LYS A 576 CE NZ REMARK 470 GLN A 586 CG CD OE1 NE2 REMARK 470 LYS A 588 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 358 O HOH A 701 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 207 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 207 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 335 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 335 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 77 -60.59 -159.62 REMARK 500 SER A 178 -163.63 -100.43 REMARK 500 ASP A 180 15.29 -147.31 REMARK 500 ASN A 189 14.54 59.76 REMARK 500 SER A 226 45.46 -88.63 REMARK 500 GLU A 356 3.93 95.15 REMARK 500 ASP A 370 -55.88 -138.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1532 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1533 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1534 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A1535 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1536 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1537 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1538 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1539 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1540 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1541 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1542 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A1543 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A1544 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A1545 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1546 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A1547 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A1548 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A1549 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1550 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1551 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1552 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1553 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1554 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1555 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1556 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1557 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A1558 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A1559 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A1560 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A1561 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1562 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A1563 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A1564 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A1565 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A1566 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A1567 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A1568 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A1569 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A1570 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH A1571 DISTANCE = 9.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMY A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 609 DBREF 6O5I A 1 53 UNP O00255 MEN1_HUMAN 1 53 DBREF 6O5I A 74 386 UNP O00255 MEN1_HUMAN 74 386 DBREF 6O5I A 399 459 UNP O00255 MEN1_HUMAN 399 459 DBREF 6O5I A 537 593 UNP O00255 MEN1_HUMAN 537 593 SEQADV 6O5I GLY A -4 UNP O00255 EXPRESSION TAG SEQADV 6O5I GLY A -3 UNP O00255 EXPRESSION TAG SEQADV 6O5I SER A -2 UNP O00255 EXPRESSION TAG SEQADV 6O5I SER A -1 UNP O00255 EXPRESSION TAG SEQADV 6O5I SER A 0 UNP O00255 EXPRESSION TAG SEQRES 1 A 489 GLY GLY SER SER SER MET GLY LEU LYS ALA ALA GLN LYS SEQRES 2 A 489 THR LEU PHE PRO LEU ARG SER ILE ASP ASP VAL VAL ARG SEQRES 3 A 489 LEU PHE ALA ALA GLU LEU GLY ARG GLU GLU PRO ASP LEU SEQRES 4 A 489 VAL LEU LEU SER LEU VAL LEU GLY PHE VAL GLU HIS PHE SEQRES 5 A 489 LEU ALA VAL ASN ARG VAL GLY LEU THR TYR PHE PRO VAL SEQRES 6 A 489 ALA ASP LEU SER ILE ILE ALA ALA LEU TYR ALA ARG PHE SEQRES 7 A 489 THR ALA GLN ILE ARG GLY ALA VAL ASP LEU SER LEU TYR SEQRES 8 A 489 PRO ARG GLU GLY GLY VAL SER SER ARG GLU LEU VAL LYS SEQRES 9 A 489 LYS VAL SER ASP VAL ILE TRP ASN SER LEU SER ARG SER SEQRES 10 A 489 TYR PHE LYS ASP ARG ALA HIS ILE GLN SER LEU PHE SER SEQRES 11 A 489 PHE ILE THR GLY THR LYS LEU ASP SER SER GLY VAL ALA SEQRES 12 A 489 PHE ALA VAL VAL GLY ALA CYS GLN ALA LEU GLY LEU ARG SEQRES 13 A 489 ASP VAL HIS LEU ALA LEU SER GLU ASP HIS ALA TRP VAL SEQRES 14 A 489 VAL PHE GLY PRO ASN GLY GLU GLN THR ALA GLU VAL THR SEQRES 15 A 489 TRP HIS GLY LYS GLY ASN GLU ASP ARG ARG GLY GLN THR SEQRES 16 A 489 VAL ASN ALA GLY VAL ALA GLU ARG SER TRP LEU TYR LEU SEQRES 17 A 489 LYS GLY SER TYR MET ARG CYS ASP ARG LYS MET GLU VAL SEQRES 18 A 489 ALA PHE MET VAL CYS ALA ILE ASN PRO SER ILE ASP LEU SEQRES 19 A 489 HIS THR ASP SER LEU GLU LEU LEU GLN LEU GLN GLN LYS SEQRES 20 A 489 LEU LEU TRP LEU LEU TYR ASP LEU GLY HIS LEU GLU ARG SEQRES 21 A 489 TYR PRO MET ALA LEU GLY ASN LEU ALA ASP LEU GLU GLU SEQRES 22 A 489 LEU GLU PRO THR PRO GLY ARG PRO ASP PRO LEU THR LEU SEQRES 23 A 489 TYR HIS LYS GLY ILE ALA SER ALA LYS THR TYR TYR ARG SEQRES 24 A 489 ASP GLU HIS ILE TYR PRO TYR MET TYR LEU ALA GLY TYR SEQRES 25 A 489 HIS CYS ARG ASN ARG ASN VAL ARG GLU ALA LEU GLN ALA SEQRES 26 A 489 TRP ALA ASP THR ALA THR VAL ILE GLN ASP TYR ASN TYR SEQRES 27 A 489 CYS ARG GLU ASP GLU GLU ILE TYR LYS GLU PHE PHE GLU SEQRES 28 A 489 VAL ALA ASN ASP VAL ILE PRO ASN LEU LEU LYS GLU ALA SEQRES 29 A 489 ALA SER LEU LEU GLU ALA GLY SER GLN GLY SER ALA LEU SEQRES 30 A 489 GLN ASP PRO GLU CYS PHE ALA HIS LEU LEU ARG PHE TYR SEQRES 31 A 489 ASP GLY ILE CYS LYS TRP GLU GLU GLY SER PRO THR PRO SEQRES 32 A 489 VAL LEU HIS VAL GLY TRP ALA THR PHE LEU VAL GLN SER SEQRES 33 A 489 LEU GLY ARG PHE GLU GLY GLN VAL ARG GLN LYS VAL ARG SEQRES 34 A 489 ILE VAL SER VAL PRO ALA PRO THR ALA SER PRO PRO PRO SEQRES 35 A 489 GLU GLY PRO VAL LEU THR PHE GLN SER GLU LYS MET LYS SEQRES 36 A 489 GLY MET LYS GLU LEU LEU VAL ALA THR LYS ILE ASN SER SEQRES 37 A 489 SER ALA ILE LYS LEU GLN LEU THR ALA GLN SER GLN VAL SEQRES 38 A 489 GLN MET LYS LYS GLN LYS VAL SER HET LMY A 601 45 HET DMS A 602 4 HET DMS A 603 4 HET DMS A 604 4 HET DMS A 605 4 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET PG4 A 609 13 HETNAM LMY ~{N}-[3-[[2-CYANO-4-METHYL-5-[[4-[[2-(METHYLAMINO)-6- HETNAM 2 LMY [2,2,2-TRIS(FLUORANYL)ETHYL]THIENO[2,3-D]PYRIMIDIN-4- HETNAM 3 LMY YL]AMINO]PIPERIDIN-1-YL]METHYL]INDOL-1-YL]METHYL]-1- HETNAM 4 LMY BICYCLO[1.1.1]PENTANYL]METHANAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 LMY C32 H35 F3 N8 O S FORMUL 3 DMS 4(C2 H6 O S) FORMUL 7 SO4 3(O4 S 2-) FORMUL 10 PG4 C8 H18 O5 FORMUL 11 HOH *871(H2 O) HELIX 1 AA1 LYS A 4 THR A 9 1 6 HELIX 2 AA2 SER A 15 GLY A 28 1 14 HELIX 3 AA3 ASP A 33 VAL A 50 1 18 HELIX 4 AA4 ASP A 82 VAL A 101 1 20 HELIX 5 AA5 ASP A 102 TYR A 106 5 5 HELIX 6 AA6 ARG A 108 VAL A 112 5 5 HELIX 7 AA7 SER A 114 SER A 128 1 15 HELIX 8 AA8 SER A 142 THR A 150 1 9 HELIX 9 AA9 ASP A 153 LEU A 168 1 16 HELIX 10 AB1 GLY A 187 GLU A 191 5 5 HELIX 11 AB2 VAL A 211 GLU A 217 1 7 HELIX 12 AB3 SER A 219 SER A 226 5 8 HELIX 13 AB4 ASP A 231 ALA A 242 1 12 HELIX 14 AB5 SER A 253 GLY A 271 1 19 HELIX 15 AB6 TYR A 276 GLU A 290 1 15 HELIX 16 AB7 ASP A 297 TYR A 313 1 17 HELIX 17 AB8 ILE A 318 ASN A 331 1 14 HELIX 18 AB9 ASN A 333 GLN A 349 1 17 HELIX 19 AC1 ASP A 357 ASP A 370 1 14 HELIX 20 AC2 ASP A 370 ALA A 385 1 16 HELIX 21 AC3 SER A 402 GLN A 405 5 4 HELIX 22 AC4 ASP A 406 GLU A 425 1 20 HELIX 23 AC5 HIS A 433 ARG A 446 1 14 HELIX 24 AC6 GLU A 448 GLN A 453 1 6 HELIX 25 AC7 SER A 555 LYS A 562 1 8 HELIX 26 AC8 GLU A 563 LEU A 565 5 3 HELIX 27 AC9 ASN A 571 ALA A 581 1 11 SHEET 1 AA1 4 GLN A 192 ALA A 194 0 SHEET 2 AA1 4 ALA A 182 PHE A 186 -1 N VAL A 184 O ALA A 194 SHEET 3 AA1 4 HIS A 174 LEU A 177 -1 N ALA A 176 O TRP A 183 SHEET 4 AA1 4 MET A 228 ARG A 229 -1 O MET A 228 N LEU A 177 SHEET 1 AA2 2 SER A 246 ASP A 248 0 SHEET 2 AA2 2 THR A 251 ASP A 252 -1 O THR A 251 N ILE A 247 SHEET 1 AA3 2 ARG A 456 ILE A 457 0 SHEET 2 AA3 2 VAL A 550 LEU A 551 1 O LEU A 551 N ARG A 456 CISPEP 1 GLY A 2 LEU A 3 0 -4.82 CISPEP 2 PHE A 11 PRO A 12 0 3.38 SITE 1 AC1 21 SER A 155 LEU A 177 SER A 178 HIS A 181 SITE 2 AC1 21 ALA A 182 PHE A 238 CYS A 241 TYR A 276 SITE 3 AC1 21 MET A 278 ASN A 282 MET A 322 TYR A 323 SITE 4 AC1 21 TRP A 341 GLU A 363 GLU A 366 VAL A 371 SITE 5 AC1 21 DMS A 602 HOH A 892 HOH A1010 HOH A1129 SITE 6 AC1 21 HOH A1168 SITE 1 AC2 3 LMY A 601 HOH A1348 HOH A1428 SITE 1 AC3 6 VAL A 185 GLY A 190 GLU A 191 TYR A 227 SITE 2 AC3 6 ARG A 229 SER A 583 SITE 1 AC4 5 PHE A 47 GLN A 400 HOH A 808 HOH A 923 SITE 2 AC4 5 HOH A1014 SITE 1 AC5 5 TYR A 77 HOH A 766 HOH A 853 HOH A1152 SITE 2 AC5 5 HOH A1531 SITE 1 AC6 4 PRO A 12 ARG A 14 HOH A 744 HOH A 790 SITE 1 AC7 4 TYR A 133 PHE A 134 ARG A 137 LYS A 151 SITE 1 AC8 8 ARG A 332 VAL A 334 ARG A 335 GLY A 401 SITE 2 AC8 8 ALA A 403 HOH A 984 HOH A1036 HOH A1134 SITE 1 AC9 7 LEU A 75 THR A 76 PHE A 365 HIS A 433 SITE 2 AC9 7 HOH A 761 HOH A 813 HOH A1232 CRYST1 49.092 79.843 124.261 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020370 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008048 0.00000