HEADER HYDROLASE 12-MAR-19 6O8V TITLE THE STRUCTURE OF LIPASE FROM THERMOMYCES LANUGINOSA IN COMPLEX WITH 1, TITLE 2 3 DIACYLGLYCEROL: RHOMBOHEDRAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRIACYLGLYCEROL LIPASE; COMPND 5 EC: 3.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOMYCES LANUGINOSUS; SOURCE 3 ORGANISM_TAXID: 5541; SOURCE 4 GENE: LIP; SOURCE 5 EXPRESSION_SYSTEM: THERMOACTINOMYCES VULGARIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 2026 KEYWDS TRIMER, ESTERASE, LIPIDS, LIPASE, SUBSTRATE COMPLEX, CATALYSIS, ACYL KEYWDS 2 INTERMEDIATE, LIPID BINDING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MCPHERSON REVDAT 1 01-MAY-24 6O8V 0 JRNL AUTH A.MCPHERSON,B.S.LARSON,A.KALASKY JRNL TITL THE CRYSTAL STRUCTURES OF THERMOMYCES (HUMICOLA) LANUGINOSA JRNL TITL 2 LIPASE IN COMPLEX WITH ENZYMATIC REACTANTS JRNL REF CURR ENZYM INHIB V. 16 199 2020 JRNL REFN ESSN 1875-6662 JRNL DOI HTTP://DX.DOI.ORG/10.2174/1573408016999200511090910 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC7_4070 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 58352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.109 REMARK 3 FREE R VALUE : 0.141 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 80.5200 - 3.5400 1.00 3334 195 0.1442 0.1555 REMARK 3 2 3.5400 - 2.8100 1.00 3222 178 0.1171 0.1438 REMARK 3 3 2.8100 - 2.4600 1.00 3201 154 0.1133 0.1301 REMARK 3 4 2.4600 - 2.2300 1.00 3196 154 0.0940 0.1136 REMARK 3 5 2.2300 - 2.0700 1.00 3131 192 0.0897 0.1371 REMARK 3 6 2.0700 - 1.9500 1.00 3176 148 0.0948 0.1294 REMARK 3 7 1.9500 - 1.8500 1.00 3178 150 0.0897 0.1311 REMARK 3 8 1.8500 - 1.7700 1.00 3119 176 0.0895 0.1413 REMARK 3 9 1.7700 - 1.7000 1.00 3142 157 0.1004 0.1447 REMARK 3 10 1.7000 - 1.6400 1.00 3181 139 0.1182 0.1804 REMARK 3 11 1.6400 - 1.5900 1.00 3095 165 0.0973 0.1477 REMARK 3 12 1.5900 - 1.5500 1.00 3189 132 0.0877 0.1313 REMARK 3 13 1.5500 - 1.5100 0.99 3079 143 0.0861 0.1272 REMARK 3 14 1.5100 - 1.4700 0.96 3015 159 0.0786 0.1320 REMARK 3 15 1.4700 - 1.4400 0.92 2831 193 0.0770 0.1243 REMARK 3 16 1.4400 - 1.4100 0.86 2686 130 0.0822 0.1455 REMARK 3 17 1.4100 - 1.3800 0.74 2327 103 0.0949 0.1720 REMARK 3 18 1.3800 - 1.3500 0.57 1748 115 0.1201 0.1649 REMARK 3 19 1.3500 - 1.3300 0.38 1178 68 0.1546 0.1830 REMARK 3 20 1.3300 - 1.3000 0.14 459 14 0.2164 0.3480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.093 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2230 REMARK 3 ANGLE : 1.155 3035 REMARK 3 CHIRALITY : 0.093 326 REMARK 3 PLANARITY : 0.018 390 REMARK 3 DIHEDRAL : 11.383 826 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6O8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58358 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 31.00 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 42.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 14.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : 0.34000 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TIB REMARK 200 REMARK 200 REMARK: THIN NEEDLES OF INDETERMINATE CROSS SECTION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: FROM A FILTERED, CRUDE NUTRIENT BROTH REMARK 280 CONTAINING 30 - 50 MG/ML LIPASE PLUS 25% PEG 3350 PLUS 0.10 M REMARK 280 MES BUFFER AT ROOM TEMPERATURE, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 38.18650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 22.04699 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.51700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 38.18650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 22.04699 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 80.51700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 38.18650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 22.04699 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.51700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 38.18650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 22.04699 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.51700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 38.18650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 22.04699 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.51700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 38.18650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 22.04699 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.51700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.09397 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 161.03400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 44.09397 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 161.03400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 44.09397 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 161.03400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 44.09397 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 161.03400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 44.09397 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 161.03400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 44.09397 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 161.03400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 691 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 731 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 780 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 793 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 796 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 ARG A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 LEU A -17 REMARK 465 VAL A -16 REMARK 465 LEU A -15 REMARK 465 PHE A -14 REMARK 465 PHE A -13 REMARK 465 VAL A -12 REMARK 465 SER A -11 REMARK 465 ALA A -10 REMARK 465 TRP A -9 REMARK 465 THR A -8 REMARK 465 ALA A -7 REMARK 465 LEU A -6 REMARK 465 ALA A -5 REMARK 465 SER A -4 REMARK 465 PRO A -3 REMARK 465 ILE A -2 REMARK 465 ARG A -1 REMARK 465 ARG A 0 REMARK 465 GLY A 245 REMARK 465 GLY A 246 REMARK 465 ASN A 247 REMARK 465 ASN A 248 REMARK 465 GLN A 249 REMARK 465 PRO A 250 REMARK 465 ASN A 251 REMARK 465 ILE A 252 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 242 CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 202 CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 146 O HOH A 404 1.32 REMARK 500 HD22 ASN A 162 O HOH A 408 1.51 REMARK 500 OD1 ASN A 94 O HOH A 401 1.55 REMARK 500 OG1 THR A 244 O HOH A 402 1.79 REMARK 500 O HOH A 402 O HOH A 465 1.90 REMARK 500 OD1 ASP A 102 O HOH A 403 1.92 REMARK 500 OG SER A 146 O HOH A 404 1.93 REMARK 500 O HOH A 427 O HOH A 566 1.99 REMARK 500 OD1 ASP A 102 O HOH A 405 2.02 REMARK 500 O HOH A 493 O HOH A 705 2.05 REMARK 500 O HOH A 485 O HOH A 683 2.06 REMARK 500 O HOH A 639 O HOH A 740 2.09 REMARK 500 O HOH A 427 O HOH A 493 2.10 REMARK 500 O HOH A 405 O HOH A 664 2.11 REMARK 500 O HOH A 422 O HOH A 601 2.11 REMARK 500 O HOH A 508 O HOH A 721 2.12 REMARK 500 O HOH A 428 O HOH A 675 2.12 REMARK 500 O ALA A 47 O HOH A 406 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 740 O HOH A 795 3555 2.03 REMARK 500 O HOH A 736 O HOH A 794 3555 2.10 REMARK 500 O HOH A 749 O HOH A 769 11445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 36 -155.57 -123.01 REMARK 500 CYS A 41 54.80 -149.78 REMARK 500 ARG A 84 -46.56 -137.63 REMARK 500 SER A 146 -129.19 60.53 REMARK 500 SER A 146 -129.22 60.83 REMARK 500 ASP A 242 -89.04 -179.40 REMARK 500 ALA A 243 -110.75 -98.90 REMARK 500 PHE A 262 -41.14 74.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 205 0.14 SIDE CHAIN REMARK 500 ARG A 232 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 785 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 787 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 788 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 789 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 790 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 791 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A 792 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 793 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 794 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 795 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 796 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A 797 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A 798 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH A 799 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH A 800 DISTANCE = 7.88 ANGSTROMS REMARK 525 HOH A 801 DISTANCE = 8.87 ANGSTROMS REMARK 525 HOH A 802 DISTANCE = 9.20 ANGSTROMS REMARK 525 HOH A 803 DISTANCE = 12.27 ANGSTROMS REMARK 525 HOH A 804 DISTANCE = 13.95 ANGSTROMS REMARK 525 HOH A 805 DISTANCE = 15.13 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 459 DBREF 6O8V A -21 269 UNP O59952 LIP_THELA 1 291 SEQADV 6O8V LEU A 86 UNP O59952 ILE 108 CONFLICT SEQRES 1 A 291 MET ARG SER SER LEU VAL LEU PHE PHE VAL SER ALA TRP SEQRES 2 A 291 THR ALA LEU ALA SER PRO ILE ARG ARG GLU VAL SER GLN SEQRES 3 A 291 ASP LEU PHE ASN GLN PHE ASN LEU PHE ALA GLN TYR SER SEQRES 4 A 291 ALA ALA ALA TYR CYS GLY LYS ASN ASN ASP ALA PRO ALA SEQRES 5 A 291 GLY THR ASN ILE THR CYS THR GLY ASN ALA CYS PRO GLU SEQRES 6 A 291 VAL GLU LYS ALA ASP ALA THR PHE LEU TYR SER PHE GLU SEQRES 7 A 291 ASP SER GLY VAL GLY ASP VAL THR GLY PHE LEU ALA LEU SEQRES 8 A 291 ASP ASN THR ASN LYS LEU ILE VAL LEU SER PHE ARG GLY SEQRES 9 A 291 SER ARG SER LEU GLU ASN TRP ILE GLY ASN LEU ASN PHE SEQRES 10 A 291 ASP LEU LYS GLU ILE ASN ASP ILE CYS SER GLY CYS ARG SEQRES 11 A 291 GLY HIS ASP GLY PHE THR SER SER TRP ARG SER VAL ALA SEQRES 12 A 291 ASP THR LEU ARG GLN LYS VAL GLU ASP ALA VAL ARG GLU SEQRES 13 A 291 HIS PRO ASP TYR ARG VAL VAL PHE THR GLY HIS SER LEU SEQRES 14 A 291 GLY GLY ALA LEU ALA THR VAL ALA GLY ALA ASP LEU ARG SEQRES 15 A 291 GLY ASN GLY TYR ASP ILE ASP VAL PHE SER TYR GLY ALA SEQRES 16 A 291 PRO ARG VAL GLY ASN ARG ALA PHE ALA GLU PHE LEU THR SEQRES 17 A 291 VAL GLN THR GLY GLY THR LEU TYR ARG ILE THR HIS THR SEQRES 18 A 291 ASN ASP ILE VAL PRO ARG LEU PRO PRO ARG GLU PHE GLY SEQRES 19 A 291 TYR SER HIS SER SER PRO GLU TYR TRP ILE LYS SER GLY SEQRES 20 A 291 THR LEU VAL PRO VAL THR ARG ASN ASP ILE VAL LYS ILE SEQRES 21 A 291 GLU GLY ILE ASP ALA THR GLY GLY ASN ASN GLN PRO ASN SEQRES 22 A 291 ILE PRO ASP ILE PRO ALA HIS LEU TRP TYR PHE GLY LEU SEQRES 23 A 291 ILE GLY THR CYS LEU HET NAG A 301 27 HET PG4 A 302 27 HET PO4 A 303 5 HET PO4 A 304 5 HET PO4 A 305 5 HET PO4 A 306 5 HET PO4 A 307 5 HET LTV A 308 51 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PO4 PHOSPHATE ION HETNAM LTV 2-HYDROXY-3-(OCTADECANOYLOXY)PROPYL PENTACOSANOATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 PG4 C8 H18 O5 FORMUL 4 PO4 5(O4 P 3-) FORMUL 9 LTV C46 H90 O5 FORMUL 10 HOH *405(H2 O) HELIX 1 AA1 SER A 3 ALA A 20 1 18 HELIX 2 AA2 TYR A 21 ASN A 26 5 6 HELIX 3 AA3 CYS A 41 ALA A 47 1 7 HELIX 4 AA4 SER A 85 LEU A 93 1 9 HELIX 5 AA5 ASP A 111 HIS A 135 1 25 HELIX 6 AA6 SER A 146 ARG A 160 1 15 HELIX 7 AA7 ASN A 178 GLN A 188 1 11 HELIX 8 AA8 ILE A 202 LEU A 206 5 5 HELIX 9 AA9 PRO A 208 GLY A 212 5 5 HELIX 10 AB1 THR A 231 ASN A 233 5 3 HELIX 11 AB2 ASP A 254 TRP A 260 1 7 SHEET 1 AA1 8 ALA A 49 SER A 58 0 SHEET 2 AA1 8 VAL A 63 ASP A 70 -1 O LEU A 67 N TYR A 53 SHEET 3 AA1 8 LEU A 75 PHE A 80 -1 O VAL A 77 N ALA A 68 SHEET 4 AA1 8 ARG A 139 HIS A 145 1 O THR A 143 N LEU A 78 SHEET 5 AA1 8 ILE A 166 TYR A 171 1 O ASP A 167 N PHE A 142 SHEET 6 AA1 8 LEU A 193 HIS A 198 1 O TYR A 194 N VAL A 168 SHEET 7 AA1 8 GLU A 219 ILE A 222 1 O ILE A 222 N THR A 197 SHEET 8 AA1 8 ILE A 235 ILE A 238 -1 O ILE A 238 N GLU A 219 SHEET 1 AA2 2 LEU A 97 GLU A 99 0 SHEET 2 AA2 2 ARG A 108 HIS A 110 -1 O GLY A 109 N LYS A 98 SSBOND 1 CYS A 22 CYS A 268 1555 1555 2.11 SSBOND 2 CYS A 36 CYS A 41 1555 1555 2.04 SSBOND 3 CYS A 104 CYS A 107 1555 1555 2.07 LINK ND2 ASN A 33 C1 NAG A 301 1555 1555 1.43 CISPEP 1 LEU A 206 PRO A 207 0 -17.05 CISPEP 2 SER A 217 PRO A 218 0 -0.60 CRYST1 76.373 76.373 241.551 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013094 0.007560 0.000000 0.00000 SCALE2 0.000000 0.015119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004140 0.00000