HEADER VIRUS 18-MAR-19 6OAS TITLE STRUCTURE OF CANINE PARVOVIRUS IN COMPLEX WITH TRANSFERRIN RECEPTOR TITLE 2 TYPE-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: 1; COMPND 4 SYNONYM: COAT PROTEIN VP1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANINE PARVOVIRUS 2; SOURCE 3 ORGANISM_COMMON: CPV-2; SOURCE 4 ORGANISM_TAXID: 246878 KEYWDS CPV, TFR, ICOSAHEDRAL, CRYO, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR H.LEE,S.HAFENSTEIN REVDAT 5 04-DEC-19 6OAS 1 REMARK REVDAT 4 23-OCT-19 6OAS 1 JRNL REVDAT 3 09-OCT-19 6OAS 1 JRNL REVDAT 2 25-SEP-19 6OAS 1 JRNL REVDAT 1 18-SEP-19 6OAS 0 JRNL AUTH H.LEE,H.M.CALLAWAY,J.O.CIFUENTE,C.M.BATOR,C.R.PARRISH, JRNL AUTH 2 S.L.HAFENSTEIN JRNL TITL TRANSFERRIN RECEPTOR BINDS VIRUS CAPSID WITH DYNAMIC MOTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 20462 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31548398 JRNL DOI 10.1073/PNAS.1904918116 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 132120 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6OAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240124. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CANINE PARVOVIRUS 2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : UNSPECIFIED REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 150.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN 1 47 31.10 -141.19 REMARK 500 ASN 1 95 34.63 -96.97 REMARK 500 LEU 1 98 30.40 -92.78 REMARK 500 ASN 1 115 74.36 -101.20 REMARK 500 VAL 1 139 -62.12 -106.90 REMARK 500 SER 1 348 -158.29 -149.68 REMARK 500 ASP 1 367 -166.59 -127.85 REMARK 500 ILE 1 469 -62.41 -96.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN 1 159 PRO 1 160 147.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-20001 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-20002 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-20003 RELATED DB: EMDB DBREF 6OAS 1 37 584 UNP Q11213 CAPSD_PAVCB 180 727 SEQRES 1 1 548 GLY VAL GLY ILE SER THR GLY THR PHE ASN ASN GLN THR SEQRES 2 1 548 GLU PHE LYS PHE LEU GLU ASN GLY TRP VAL GLU ILE THR SEQRES 3 1 548 ALA ASN SER SER ARG LEU VAL HIS LEU ASN MET PRO GLU SEQRES 4 1 548 SER GLU ASN TYR ARG ARG VAL VAL VAL ASN ASN MET ASP SEQRES 5 1 548 LYS THR ALA VAL ASN GLY ASN MET ALA LEU ASP ASP ILE SEQRES 6 1 548 HIS ALA GLN ILE VAL THR PRO TRP SER LEU VAL ASP ALA SEQRES 7 1 548 ASN ALA TRP GLY VAL TRP PHE ASN PRO GLY ASP TRP GLN SEQRES 8 1 548 LEU ILE VAL ASN THR MET SER GLU LEU HIS LEU VAL SER SEQRES 9 1 548 PHE GLU GLN GLU ILE PHE ASN VAL VAL LEU LYS THR VAL SEQRES 10 1 548 SER GLU SER ALA THR GLN PRO PRO THR LYS VAL TYR ASN SEQRES 11 1 548 ASN ASP LEU THR ALA SER LEU MET VAL ALA LEU ASP SER SEQRES 12 1 548 ASN ASN THR MET PRO PHE THR PRO ALA ALA MET ARG SER SEQRES 13 1 548 GLU THR LEU GLY PHE TYR PRO TRP LYS PRO THR ILE PRO SEQRES 14 1 548 THR PRO TRP ARG TYR TYR PHE GLN TRP ASP ARG THR LEU SEQRES 15 1 548 ILE PRO SER HIS THR GLY THR SER GLY THR PRO THR ASN SEQRES 16 1 548 ILE TYR HIS GLY THR ASP PRO ASP ASP VAL GLN PHE TYR SEQRES 17 1 548 THR ILE GLU ASN SER VAL PRO VAL HIS LEU LEU ARG THR SEQRES 18 1 548 GLY ASP GLU PHE ALA THR GLY THR PHE PHE PHE ASP CYS SEQRES 19 1 548 LYS PRO CYS ARG LEU THR HIS THR TRP GLN THR ASN ARG SEQRES 20 1 548 ALA LEU GLY LEU PRO PRO PHE LEU ASN SER LEU PRO GLN SEQRES 21 1 548 SER GLU GLY ALA THR ASN PHE GLY ASP ILE GLY VAL GLN SEQRES 22 1 548 GLN ASP LYS ARG ARG GLY VAL THR GLN MET GLY ASN THR SEQRES 23 1 548 ASN TYR ILE THR GLU ALA THR ILE MET ARG PRO ALA GLU SEQRES 24 1 548 VAL GLY TYR SER ALA PRO TYR TYR SER PHE GLU ALA SER SEQRES 25 1 548 THR GLN GLY PRO PHE LYS THR PRO ILE ALA ALA GLY ARG SEQRES 26 1 548 GLY GLY ALA GLN THR ASP GLU ASN GLN ALA ALA ASP GLY SEQRES 27 1 548 ASN PRO ARG TYR ALA PHE GLY ARG GLN HIS GLY GLN LYS SEQRES 28 1 548 THR THR THR THR GLY GLU THR PRO GLU ARG PHE THR TYR SEQRES 29 1 548 ILE ALA HIS GLN ASP THR GLY ARG TYR PRO GLU GLY ASP SEQRES 30 1 548 TRP ILE GLN ASN ILE ASN PHE ASN LEU PRO VAL THR ASN SEQRES 31 1 548 ASP ASN VAL LEU LEU PRO THR ASP PRO ILE GLY GLY LYS SEQRES 32 1 548 THR GLY ILE ASN TYR THR ASN ILE PHE ASN THR TYR GLY SEQRES 33 1 548 PRO LEU THR ALA LEU ASN ASN VAL PRO PRO VAL TYR PRO SEQRES 34 1 548 ASN GLY GLN ILE TRP ASP LYS GLU PHE ASP THR ASP LEU SEQRES 35 1 548 LYS PRO ARG LEU HIS VAL ASN ALA PRO PHE VAL CYS GLN SEQRES 36 1 548 ASN ASN CYS PRO GLY GLN LEU PHE VAL LYS VAL ALA PRO SEQRES 37 1 548 ASN LEU THR ASN GLU TYR ASP PRO ASP ALA SER ALA ASN SEQRES 38 1 548 MET SER ARG ILE VAL THR TYR SER ASP PHE TRP TRP LYS SEQRES 39 1 548 GLY LYS LEU VAL PHE LYS ALA LYS LEU ARG ALA SER HIS SEQRES 40 1 548 THR TRP ASN PRO ILE GLN GLN MET SER ILE ASN VAL ASP SEQRES 41 1 548 ASN GLN PHE ASN TYR VAL PRO SER ASN ILE GLY GLY MET SEQRES 42 1 548 LYS ILE VAL TYR GLU LYS SER GLN LEU ALA PRO ARG LYS SEQRES 43 1 548 LEU TYR HELIX 1 AA1 ASN 1 95 ASP 1 99 5 5 HELIX 2 AA2 ALA 1 116 TRP 1 120 5 5 HELIX 3 AA3 ASN 1 122 THR 1 132 1 11 HELIX 4 AA4 PRO 1 187 ARG 1 191 5 5 HELIX 5 AA5 ASP 1 237 VAL 1 241 5 5 HELIX 6 AA6 THR 1 245 VAL 1 250 1 6 HELIX 7 AA7 THR 1 281 LEU 1 285 5 5 HELIX 8 AA8 GLY 1 381 GLY 1 385 5 5 HELIX 9 AA9 TYR 1 409 ASP 1 413 5 5 HELIX 10 AB1 THR 1 425 ASP 1 427 5 3 HELIX 11 AB2 ASN 1 443 ILE 1 447 5 5 HELIX 12 AB3 ASN 1 557 TYR 1 561 5 5 SHEET 1 AA1 5 THR 1 49 PHE 1 53 0 SHEET 2 AA1 5 TRP 1 58 ASN 1 72 -1 O GLU 1 60 N LYS 1 52 SHEET 3 AA1 5 THR 1 523 LEU 1 539 -1 O PHE 1 535 N ILE 1 61 SHEET 4 AA1 5 MET 1 133 SER 1 154 -1 N HIS 1 137 O LYS 1 536 SHEET 5 AA1 5 CYS 1 273 ARG 1 274 -1 O CYS 1 273 N LEU 1 136 SHEET 1 AA2 3 CYS 1 273 ARG 1 274 0 SHEET 2 AA2 3 MET 1 133 SER 1 154 -1 N LEU 1 136 O CYS 1 273 SHEET 3 AA2 3 PHE 1 266 PHE 1 267 -1 O PHE 1 266 N PHE 1 141 SHEET 1 AA3 3 PHE 1 266 PHE 1 267 0 SHEET 2 AA3 3 MET 1 133 SER 1 154 -1 N PHE 1 141 O PHE 1 266 SHEET 3 AA3 3 PHE 1 261 ALA 1 262 -1 O PHE 1 261 N ILE 1 145 SHEET 1 AA4 3 PHE 1 261 ALA 1 262 0 SHEET 2 AA4 3 MET 1 133 SER 1 154 -1 N ILE 1 145 O PHE 1 261 SHEET 3 AA4 3 VAL 1 164 ASN 1 167 -1 O ASN 1 166 N THR 1 152 SHEET 1 AA5 5 VAL 1 164 ASN 1 167 0 SHEET 2 AA5 5 MET 1 133 SER 1 154 -1 N THR 1 152 O ASN 1 166 SHEET 3 AA5 5 THR 1 523 LEU 1 539 -1 O LYS 1 536 N HIS 1 137 SHEET 4 AA5 5 TRP 1 58 ASN 1 72 -1 N ILE 1 61 O PHE 1 535 SHEET 5 AA5 5 THR 1 49 PHE 1 53 -1 N LYS 1 52 O GLU 1 60 SHEET 1 AA6 3 ARG 1 80 VAL 1 84 0 SHEET 2 AA6 3 HIS 1 102 VAL 1 112 -1 O HIS 1 102 N VAL 1 84 SHEET 3 AA6 3 THR 1 206 TYR 1 211 -1 O THR 1 206 N LEU 1 111 SHEET 1 AA7 5 ARG 1 80 VAL 1 84 0 SHEET 2 AA7 5 HIS 1 102 VAL 1 112 -1 O HIS 1 102 N VAL 1 84 SHEET 3 AA7 5 GLN 1 497 VAL 1 502 -1 O LEU 1 498 N VAL 1 112 SHEET 4 AA7 5 LEU 1 173 ASP 1 178 -1 N MET 1 174 O LYS 1 501 SHEET 5 AA7 5 VAL 1 252 LEU 1 255 -1 O HIS 1 253 N VAL 1 175 SHEET 1 AA8 2 ASP 1 215 LEU 1 218 0 SHEET 2 AA8 2 ASN 1 231 GLY 1 235 -1 O ILE 1 232 N THR 1 217 SHEET 1 AA9 2 THR 1 276 THR 1 278 0 SHEET 2 AA9 2 ALA 1 579 ARG 1 581 1 O ALA 1 579 N HIS 1 277 SHEET 1 AB1 2 GLU 1 335 VAL 1 336 0 SHEET 2 AB1 2 THR 1 455 ALA 1 456 1 O ALA 1 456 N GLU 1 335 SHEET 1 AB2 2 PHE 1 345 SER 1 348 0 SHEET 2 AB2 2 GLY 1 351 LYS 1 354 -1 O PHE 1 353 N GLU 1 346 SHEET 1 AB3 2 ARG 1 377 PHE 1 380 0 SHEET 2 AB3 2 GLU 1 396 THR 1 399 -1 O PHE 1 398 N TYR 1 378 SHEET 1 AB4 2 ILE 1 415 GLN 1 416 0 SHEET 2 AB4 2 VAL 1 429 LEU 1 430 -1 O LEU 1 430 N ILE 1 415 SHEET 1 AB5 2 TRP 1 470 LYS 1 472 0 SHEET 2 AB5 2 PHE 1 488 CYS 1 490 1 O CYS 1 490 N ASP 1 471 SSBOND 1 CYS 1 490 CYS 1 494 1555 1555 2.03 CISPEP 1 TYR 1 464 PRO 1 465 0 -4.72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000