data_6OFJ # _entry.id 6OFJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6OFJ WWPDB D_1000239917 EMDB EMD-20047 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of the native rhodopsin dimer from rod photoreceptor cells' _pdbx_database_related.db_id EMD-20047 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6OFJ _pdbx_database_status.recvd_initial_deposition_date 2019-03-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhao, D.Y.' 1 ? 'Gulati, S.' 2 0000-0002-8255-479X 'Ernst, O.P.' 3 ? 'Palczewski, K.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 294 _citation.language ? _citation.page_first 14215 _citation.page_last 14230 _citation.title 'Cryo-EM structure of the native rhodopsin dimer in nanodiscs.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.RA119.010089 _citation.pdbx_database_id_PubMed 31399513 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, D.Y.' 1 ? primary 'Poge, M.' 2 ? primary 'Morizumi, T.' 3 0000-0002-2785-209X primary 'Gulati, S.' 4 ? primary 'Van Eps, N.' 5 ? primary 'Zhang, J.' 6 ? primary 'Miszta, P.' 7 ? primary 'Filipek, S.' 8 ? primary 'Mahamid, J.' 9 ? primary 'Plitzko, J.M.' 10 ? primary 'Baumeister, W.' 11 ? primary 'Ernst, O.P.' 12 0000-0002-8863-9444 primary 'Palczewski, K.' 13 0000-0002-0788-545X # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6OFJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.0 _cell.length_a_esd ? _cell.length_b 1.0 _cell.length_b_esd ? _cell.length_c 1.0 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description Rhodopsin _entity.formula_weight 39031.457 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA ; _entity_poly.pdbx_seq_one_letter_code_can ;MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 GLY n 1 4 THR n 1 5 GLU n 1 6 GLY n 1 7 PRO n 1 8 ASN n 1 9 PHE n 1 10 TYR n 1 11 VAL n 1 12 PRO n 1 13 PHE n 1 14 SER n 1 15 ASN n 1 16 LYS n 1 17 THR n 1 18 GLY n 1 19 VAL n 1 20 VAL n 1 21 ARG n 1 22 SER n 1 23 PRO n 1 24 PHE n 1 25 GLU n 1 26 ALA n 1 27 PRO n 1 28 GLN n 1 29 TYR n 1 30 TYR n 1 31 LEU n 1 32 ALA n 1 33 GLU n 1 34 PRO n 1 35 TRP n 1 36 GLN n 1 37 PHE n 1 38 SER n 1 39 MET n 1 40 LEU n 1 41 ALA n 1 42 ALA n 1 43 TYR n 1 44 MET n 1 45 PHE n 1 46 LEU n 1 47 LEU n 1 48 ILE n 1 49 MET n 1 50 LEU n 1 51 GLY n 1 52 PHE n 1 53 PRO n 1 54 ILE n 1 55 ASN n 1 56 PHE n 1 57 LEU n 1 58 THR n 1 59 LEU n 1 60 TYR n 1 61 VAL n 1 62 THR n 1 63 VAL n 1 64 GLN n 1 65 HIS n 1 66 LYS n 1 67 LYS n 1 68 LEU n 1 69 ARG n 1 70 THR n 1 71 PRO n 1 72 LEU n 1 73 ASN n 1 74 TYR n 1 75 ILE n 1 76 LEU n 1 77 LEU n 1 78 ASN n 1 79 LEU n 1 80 ALA n 1 81 VAL n 1 82 ALA n 1 83 ASP n 1 84 LEU n 1 85 PHE n 1 86 MET n 1 87 VAL n 1 88 PHE n 1 89 GLY n 1 90 GLY n 1 91 PHE n 1 92 THR n 1 93 THR n 1 94 THR n 1 95 LEU n 1 96 TYR n 1 97 THR n 1 98 SER n 1 99 LEU n 1 100 HIS n 1 101 GLY n 1 102 TYR n 1 103 PHE n 1 104 VAL n 1 105 PHE n 1 106 GLY n 1 107 PRO n 1 108 THR n 1 109 GLY n 1 110 CYS n 1 111 ASN n 1 112 LEU n 1 113 GLU n 1 114 GLY n 1 115 PHE n 1 116 PHE n 1 117 ALA n 1 118 THR n 1 119 LEU n 1 120 GLY n 1 121 GLY n 1 122 GLU n 1 123 ILE n 1 124 ALA n 1 125 LEU n 1 126 TRP n 1 127 SER n 1 128 LEU n 1 129 VAL n 1 130 VAL n 1 131 LEU n 1 132 ALA n 1 133 ILE n 1 134 GLU n 1 135 ARG n 1 136 TYR n 1 137 VAL n 1 138 VAL n 1 139 VAL n 1 140 CYS n 1 141 LYS n 1 142 PRO n 1 143 MET n 1 144 SER n 1 145 ASN n 1 146 PHE n 1 147 ARG n 1 148 PHE n 1 149 GLY n 1 150 GLU n 1 151 ASN n 1 152 HIS n 1 153 ALA n 1 154 ILE n 1 155 MET n 1 156 GLY n 1 157 VAL n 1 158 ALA n 1 159 PHE n 1 160 THR n 1 161 TRP n 1 162 VAL n 1 163 MET n 1 164 ALA n 1 165 LEU n 1 166 ALA n 1 167 CYS n 1 168 ALA n 1 169 ALA n 1 170 PRO n 1 171 PRO n 1 172 LEU n 1 173 VAL n 1 174 GLY n 1 175 TRP n 1 176 SER n 1 177 ARG n 1 178 TYR n 1 179 ILE n 1 180 PRO n 1 181 GLU n 1 182 GLY n 1 183 MET n 1 184 GLN n 1 185 CYS n 1 186 SER n 1 187 CYS n 1 188 GLY n 1 189 ILE n 1 190 ASP n 1 191 TYR n 1 192 TYR n 1 193 THR n 1 194 PRO n 1 195 HIS n 1 196 GLU n 1 197 GLU n 1 198 THR n 1 199 ASN n 1 200 ASN n 1 201 GLU n 1 202 SER n 1 203 PHE n 1 204 VAL n 1 205 ILE n 1 206 TYR n 1 207 MET n 1 208 PHE n 1 209 VAL n 1 210 VAL n 1 211 HIS n 1 212 PHE n 1 213 ILE n 1 214 ILE n 1 215 PRO n 1 216 LEU n 1 217 ILE n 1 218 VAL n 1 219 ILE n 1 220 PHE n 1 221 PHE n 1 222 CYS n 1 223 TYR n 1 224 GLY n 1 225 GLN n 1 226 LEU n 1 227 VAL n 1 228 PHE n 1 229 THR n 1 230 VAL n 1 231 LYS n 1 232 GLU n 1 233 ALA n 1 234 ALA n 1 235 ALA n 1 236 GLN n 1 237 GLN n 1 238 GLN n 1 239 GLU n 1 240 SER n 1 241 ALA n 1 242 THR n 1 243 THR n 1 244 GLN n 1 245 LYS n 1 246 ALA n 1 247 GLU n 1 248 LYS n 1 249 GLU n 1 250 VAL n 1 251 THR n 1 252 ARG n 1 253 MET n 1 254 VAL n 1 255 ILE n 1 256 ILE n 1 257 MET n 1 258 VAL n 1 259 ILE n 1 260 ALA n 1 261 PHE n 1 262 LEU n 1 263 ILE n 1 264 CYS n 1 265 TRP n 1 266 LEU n 1 267 PRO n 1 268 TYR n 1 269 ALA n 1 270 GLY n 1 271 VAL n 1 272 ALA n 1 273 PHE n 1 274 TYR n 1 275 ILE n 1 276 PHE n 1 277 THR n 1 278 HIS n 1 279 GLN n 1 280 GLY n 1 281 SER n 1 282 ASP n 1 283 PHE n 1 284 GLY n 1 285 PRO n 1 286 ILE n 1 287 PHE n 1 288 MET n 1 289 THR n 1 290 ILE n 1 291 PRO n 1 292 ALA n 1 293 PHE n 1 294 PHE n 1 295 ALA n 1 296 LYS n 1 297 THR n 1 298 SER n 1 299 ALA n 1 300 VAL n 1 301 TYR n 1 302 ASN n 1 303 PRO n 1 304 VAL n 1 305 ILE n 1 306 TYR n 1 307 ILE n 1 308 MET n 1 309 MET n 1 310 ASN n 1 311 LYS n 1 312 GLN n 1 313 PHE n 1 314 ARG n 1 315 ASN n 1 316 CYS n 1 317 MET n 1 318 VAL n 1 319 THR n 1 320 THR n 1 321 LEU n 1 322 CYS n 1 323 CYS n 1 324 GLY n 1 325 LYS n 1 326 ASN n 1 327 PRO n 1 328 LEU n 1 329 GLY n 1 330 ASP n 1 331 ASP n 1 332 GLU n 1 333 ALA n 1 334 SER n 1 335 THR n 1 336 THR n 1 337 VAL n 1 338 SER n 1 339 LYS n 1 340 THR n 1 341 GLU n 1 342 THR n 1 343 SER n 1 344 GLN n 1 345 VAL n 1 346 ALA n 1 347 PRO n 1 348 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 348 _entity_src_nat.common_name Bovine _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue Retina _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ Eye _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OPSD_BOVIN _struct_ref.pdbx_db_accession P02699 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTT LCCGKNPLGDDEASTTVSKTETSQVAPA ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6OFJ A 1 ? 348 ? P02699 1 ? 348 ? 1 348 2 1 6OFJ B 1 ? 348 ? P02699 1 ? 348 ? 1 348 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6OFJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6OFJ _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.005 ? 10474 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.941 ? 18890 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 6.364 ? 4282 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.046 ? 808 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 1516 ? f_plane_restr ? ? # _struct.entry_id 6OFJ _struct.title 'Cryo-EM structure of the native rhodopsin dimer from rod photoreceptor cells' _struct.pdbx_descriptor Rhodopsin _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6OFJ _struct_keywords.text 'G protein-coupled receptor, native dimer, rod outer segment, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 14 ? GLY A 18 ? SER A 14 GLY A 18 5 ? 5 HELX_P HELX_P2 AA2 GLU A 33 ? HIS A 65 ? GLU A 33 HIS A 65 1 ? 33 HELX_P HELX_P3 AA3 THR A 70 ? GLY A 90 ? THR A 70 GLY A 90 1 ? 21 HELX_P HELX_P4 AA4 GLY A 90 ? GLY A 101 ? GLY A 90 GLY A 101 1 ? 12 HELX_P HELX_P5 AA5 GLY A 106 ? LYS A 141 ? GLY A 106 LYS A 141 1 ? 36 HELX_P HELX_P6 AA6 ALA A 153 ? ALA A 168 ? ALA A 153 ALA A 168 1 ? 16 HELX_P HELX_P7 AA7 ALA A 169 ? VAL A 173 ? ALA A 169 VAL A 173 5 ? 5 HELX_P HELX_P8 AA8 ASN A 200 ? PHE A 212 ? ASN A 200 PHE A 212 1 ? 13 HELX_P HELX_P9 AA9 PHE A 212 ? GLY A 224 ? PHE A 212 GLY A 224 1 ? 13 HELX_P HELX_P10 AB1 ALA A 241 ? HIS A 278 ? ALA A 241 HIS A 278 1 ? 38 HELX_P HELX_P11 AB2 GLY A 284 ? ALA A 295 ? GLY A 284 ALA A 295 1 ? 12 HELX_P HELX_P12 AB3 LYS A 296 ? VAL A 300 ? LYS A 296 VAL A 300 5 ? 5 HELX_P HELX_P13 AB4 TYR A 301 ? ASN A 310 ? TYR A 301 ASN A 310 1 ? 10 HELX_P HELX_P14 AB5 ASN A 310 ? CYS A 322 ? ASN A 310 CYS A 322 1 ? 13 HELX_P HELX_P15 AB6 SER B 14 ? GLY B 18 ? SER B 14 GLY B 18 5 ? 5 HELX_P HELX_P16 AB7 GLU B 33 ? HIS B 65 ? GLU B 33 HIS B 65 1 ? 33 HELX_P HELX_P17 AB8 THR B 70 ? GLY B 90 ? THR B 70 GLY B 90 1 ? 21 HELX_P HELX_P18 AB9 GLY B 90 ? GLY B 101 ? GLY B 90 GLY B 101 1 ? 12 HELX_P HELX_P19 AC1 GLY B 106 ? LYS B 141 ? GLY B 106 LYS B 141 1 ? 36 HELX_P HELX_P20 AC2 ALA B 153 ? ALA B 168 ? ALA B 153 ALA B 168 1 ? 16 HELX_P HELX_P21 AC3 ALA B 169 ? VAL B 173 ? ALA B 169 VAL B 173 5 ? 5 HELX_P HELX_P22 AC4 ASN B 200 ? PHE B 212 ? ASN B 200 PHE B 212 1 ? 13 HELX_P HELX_P23 AC5 PHE B 212 ? GLY B 224 ? PHE B 212 GLY B 224 1 ? 13 HELX_P HELX_P24 AC6 ALA B 241 ? HIS B 278 ? ALA B 241 HIS B 278 1 ? 38 HELX_P HELX_P25 AC7 GLY B 284 ? ALA B 295 ? GLY B 284 ALA B 295 1 ? 12 HELX_P HELX_P26 AC8 LYS B 296 ? VAL B 300 ? LYS B 296 VAL B 300 5 ? 5 HELX_P HELX_P27 AC9 TYR B 301 ? ASN B 310 ? TYR B 301 ASN B 310 1 ? 10 HELX_P HELX_P28 AD1 ASN B 310 ? CYS B 322 ? ASN B 310 CYS B 322 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 110 SG ? ? ? 1_555 A CYS 187 SG ? ? A CYS 110 A CYS 187 1_555 ? ? ? ? ? ? ? 2.028 ? disulf2 disulf ? ? B CYS 110 SG ? ? ? 1_555 B CYS 187 SG ? ? B CYS 110 B CYS 187 1_555 ? ? ? ? ? ? ? 2.027 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 179 ? GLU A 181 ? ILE A 179 GLU A 181 AA1 2 SER A 186 ? GLY A 188 ? SER A 186 GLY A 188 AA2 1 ILE B 179 ? GLU B 181 ? ILE B 179 GLU B 181 AA2 2 SER B 186 ? GLY B 188 ? SER B 186 GLY B 188 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 181 ? N GLU A 181 O SER A 186 ? O SER A 186 AA2 1 2 N GLU B 181 ? N GLU B 181 O SER B 186 ? O SER B 186 # _atom_sites.entry_id 6OFJ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 TRP 35 35 35 TRP TRP A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 MET 44 44 44 MET MET A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 HIS 100 100 100 HIS HIS A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 CYS 110 110 110 CYS CYS A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 TRP 126 126 126 TRP TRP A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 TYR 136 136 136 TYR TYR A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 CYS 140 140 140 CYS CYS A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 MET 143 143 143 MET MET A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 HIS 152 152 152 HIS HIS A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 MET 155 155 155 MET MET A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 TRP 161 161 161 TRP TRP A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 MET 163 163 163 MET MET A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 CYS 167 167 167 CYS CYS A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 PRO 170 170 170 PRO PRO A . n A 1 171 PRO 171 171 171 PRO PRO A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 TRP 175 175 175 TRP TRP A . n A 1 176 SER 176 176 176 SER SER A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 TYR 178 178 178 TYR TYR A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 PRO 180 180 180 PRO PRO A . n A 1 181 GLU 181 181 181 GLU GLU A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 MET 183 183 183 MET MET A . n A 1 184 GLN 184 184 184 GLN GLN A . n A 1 185 CYS 185 185 185 CYS CYS A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 CYS 187 187 187 CYS CYS A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 ASP 190 190 190 ASP ASP A . n A 1 191 TYR 191 191 191 TYR TYR A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 PRO 194 194 194 PRO PRO A . n A 1 195 HIS 195 195 195 HIS HIS A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 ASN 199 199 199 ASN ASN A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 SER 202 202 202 SER SER A . n A 1 203 PHE 203 203 203 PHE PHE A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 ILE 205 205 205 ILE ILE A . n A 1 206 TYR 206 206 206 TYR TYR A . n A 1 207 MET 207 207 207 MET MET A . n A 1 208 PHE 208 208 208 PHE PHE A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 VAL 210 210 210 VAL VAL A . n A 1 211 HIS 211 211 211 HIS HIS A . n A 1 212 PHE 212 212 212 PHE PHE A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 PRO 215 215 215 PRO PRO A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 VAL 218 218 218 VAL VAL A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 PHE 220 220 220 PHE PHE A . n A 1 221 PHE 221 221 221 PHE PHE A . n A 1 222 CYS 222 222 222 CYS CYS A . n A 1 223 TYR 223 223 223 TYR TYR A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 GLN 225 225 225 GLN GLN A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 VAL 227 227 227 VAL VAL A . n A 1 228 PHE 228 228 228 PHE PHE A . n A 1 229 THR 229 229 229 THR THR A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 ALA 235 235 235 ALA ALA A . n A 1 236 GLN 236 236 236 GLN GLN A . n A 1 237 GLN 237 237 237 GLN GLN A . n A 1 238 GLN 238 238 238 GLN GLN A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 SER 240 240 240 SER SER A . n A 1 241 ALA 241 241 241 ALA ALA A . n A 1 242 THR 242 242 242 THR THR A . n A 1 243 THR 243 243 243 THR THR A . n A 1 244 GLN 244 244 244 GLN GLN A . n A 1 245 LYS 245 245 245 LYS LYS A . n A 1 246 ALA 246 246 246 ALA ALA A . n A 1 247 GLU 247 247 247 GLU GLU A . n A 1 248 LYS 248 248 248 LYS LYS A . n A 1 249 GLU 249 249 249 GLU GLU A . n A 1 250 VAL 250 250 250 VAL VAL A . n A 1 251 THR 251 251 251 THR THR A . n A 1 252 ARG 252 252 252 ARG ARG A . n A 1 253 MET 253 253 253 MET MET A . n A 1 254 VAL 254 254 254 VAL VAL A . n A 1 255 ILE 255 255 255 ILE ILE A . n A 1 256 ILE 256 256 256 ILE ILE A . n A 1 257 MET 257 257 257 MET MET A . n A 1 258 VAL 258 258 258 VAL VAL A . n A 1 259 ILE 259 259 259 ILE ILE A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 PHE 261 261 261 PHE PHE A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 ILE 263 263 263 ILE ILE A . n A 1 264 CYS 264 264 264 CYS CYS A . n A 1 265 TRP 265 265 265 TRP TRP A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 PRO 267 267 267 PRO PRO A . n A 1 268 TYR 268 268 268 TYR TYR A . n A 1 269 ALA 269 269 269 ALA ALA A . n A 1 270 GLY 270 270 270 GLY GLY A . n A 1 271 VAL 271 271 271 VAL VAL A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 PHE 273 273 273 PHE PHE A . n A 1 274 TYR 274 274 274 TYR TYR A . n A 1 275 ILE 275 275 275 ILE ILE A . n A 1 276 PHE 276 276 276 PHE PHE A . n A 1 277 THR 277 277 277 THR THR A . n A 1 278 HIS 278 278 278 HIS HIS A . n A 1 279 GLN 279 279 279 GLN GLN A . n A 1 280 GLY 280 280 280 GLY GLY A . n A 1 281 SER 281 281 281 SER SER A . n A 1 282 ASP 282 282 282 ASP ASP A . n A 1 283 PHE 283 283 283 PHE PHE A . n A 1 284 GLY 284 284 284 GLY GLY A . n A 1 285 PRO 285 285 285 PRO PRO A . n A 1 286 ILE 286 286 286 ILE ILE A . n A 1 287 PHE 287 287 287 PHE PHE A . n A 1 288 MET 288 288 288 MET MET A . n A 1 289 THR 289 289 289 THR THR A . n A 1 290 ILE 290 290 290 ILE ILE A . n A 1 291 PRO 291 291 291 PRO PRO A . n A 1 292 ALA 292 292 292 ALA ALA A . n A 1 293 PHE 293 293 293 PHE PHE A . n A 1 294 PHE 294 294 294 PHE PHE A . n A 1 295 ALA 295 295 295 ALA ALA A . n A 1 296 LYS 296 296 296 LYS LYS A . n A 1 297 THR 297 297 297 THR THR A . n A 1 298 SER 298 298 298 SER SER A . n A 1 299 ALA 299 299 299 ALA ALA A . n A 1 300 VAL 300 300 300 VAL VAL A . n A 1 301 TYR 301 301 301 TYR TYR A . n A 1 302 ASN 302 302 302 ASN ASN A . n A 1 303 PRO 303 303 303 PRO PRO A . n A 1 304 VAL 304 304 304 VAL VAL A . n A 1 305 ILE 305 305 305 ILE ILE A . n A 1 306 TYR 306 306 306 TYR TYR A . n A 1 307 ILE 307 307 307 ILE ILE A . n A 1 308 MET 308 308 308 MET MET A . n A 1 309 MET 309 309 309 MET MET A . n A 1 310 ASN 310 310 310 ASN ASN A . n A 1 311 LYS 311 311 311 LYS LYS A . n A 1 312 GLN 312 312 312 GLN GLN A . n A 1 313 PHE 313 313 313 PHE PHE A . n A 1 314 ARG 314 314 314 ARG ARG A . n A 1 315 ASN 315 315 315 ASN ASN A . n A 1 316 CYS 316 316 316 CYS CYS A . n A 1 317 MET 317 317 317 MET MET A . n A 1 318 VAL 318 318 318 VAL VAL A . n A 1 319 THR 319 319 319 THR THR A . n A 1 320 THR 320 320 320 THR THR A . n A 1 321 LEU 321 321 321 LEU LEU A . n A 1 322 CYS 322 322 322 CYS CYS A . n A 1 323 CYS 323 323 323 CYS CYS A . n A 1 324 GLY 324 324 324 GLY GLY A . n A 1 325 LYS 325 325 325 LYS LYS A . n A 1 326 ASN 326 326 ? ? ? A . n A 1 327 PRO 327 327 ? ? ? A . n A 1 328 LEU 328 328 ? ? ? A . n A 1 329 GLY 329 329 ? ? ? A . n A 1 330 ASP 330 330 ? ? ? A . n A 1 331 ASP 331 331 ? ? ? A . n A 1 332 GLU 332 332 ? ? ? A . n A 1 333 ALA 333 333 ? ? ? A . n A 1 334 SER 334 334 ? ? ? A . n A 1 335 THR 335 335 ? ? ? A . n A 1 336 THR 336 336 ? ? ? A . n A 1 337 VAL 337 337 ? ? ? A . n A 1 338 SER 338 338 ? ? ? A . n A 1 339 LYS 339 339 ? ? ? A . n A 1 340 THR 340 340 ? ? ? A . n A 1 341 GLU 341 341 ? ? ? A . n A 1 342 THR 342 342 ? ? ? A . n A 1 343 SER 343 343 ? ? ? A . n A 1 344 GLN 344 344 ? ? ? A . n A 1 345 VAL 345 345 ? ? ? A . n A 1 346 ALA 346 346 ? ? ? A . n A 1 347 PRO 347 347 ? ? ? A . n A 1 348 ALA 348 348 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ASN 2 2 2 ASN ASN B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 PRO 7 7 7 PRO PRO B . n B 1 8 ASN 8 8 8 ASN ASN B . n B 1 9 PHE 9 9 9 PHE PHE B . n B 1 10 TYR 10 10 10 TYR TYR B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 PHE 13 13 13 PHE PHE B . n B 1 14 SER 14 14 14 SER SER B . n B 1 15 ASN 15 15 15 ASN ASN B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 THR 17 17 17 THR THR B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 VAL 19 19 19 VAL VAL B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 ARG 21 21 21 ARG ARG B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 PRO 23 23 23 PRO PRO B . n B 1 24 PHE 24 24 24 PHE PHE B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 ALA 26 26 26 ALA ALA B . n B 1 27 PRO 27 27 27 PRO PRO B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 TYR 29 29 29 TYR TYR B . n B 1 30 TYR 30 30 30 TYR TYR B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 ALA 32 32 32 ALA ALA B . n B 1 33 GLU 33 33 33 GLU GLU B . n B 1 34 PRO 34 34 34 PRO PRO B . n B 1 35 TRP 35 35 35 TRP TRP B . n B 1 36 GLN 36 36 36 GLN GLN B . n B 1 37 PHE 37 37 37 PHE PHE B . n B 1 38 SER 38 38 38 SER SER B . n B 1 39 MET 39 39 39 MET MET B . n B 1 40 LEU 40 40 40 LEU LEU B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 ALA 42 42 42 ALA ALA B . n B 1 43 TYR 43 43 43 TYR TYR B . n B 1 44 MET 44 44 44 MET MET B . n B 1 45 PHE 45 45 45 PHE PHE B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 ILE 48 48 48 ILE ILE B . n B 1 49 MET 49 49 49 MET MET B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 PHE 52 52 52 PHE PHE B . n B 1 53 PRO 53 53 53 PRO PRO B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 ASN 55 55 55 ASN ASN B . n B 1 56 PHE 56 56 56 PHE PHE B . n B 1 57 LEU 57 57 57 LEU LEU B . n B 1 58 THR 58 58 58 THR THR B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 TYR 60 60 60 TYR TYR B . n B 1 61 VAL 61 61 61 VAL VAL B . n B 1 62 THR 62 62 62 THR THR B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 GLN 64 64 64 GLN GLN B . n B 1 65 HIS 65 65 65 HIS HIS B . n B 1 66 LYS 66 66 66 LYS LYS B . n B 1 67 LYS 67 67 67 LYS LYS B . n B 1 68 LEU 68 68 68 LEU LEU B . n B 1 69 ARG 69 69 69 ARG ARG B . n B 1 70 THR 70 70 70 THR THR B . n B 1 71 PRO 71 71 71 PRO PRO B . n B 1 72 LEU 72 72 72 LEU LEU B . n B 1 73 ASN 73 73 73 ASN ASN B . n B 1 74 TYR 74 74 74 TYR TYR B . n B 1 75 ILE 75 75 75 ILE ILE B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 LEU 77 77 77 LEU LEU B . n B 1 78 ASN 78 78 78 ASN ASN B . n B 1 79 LEU 79 79 79 LEU LEU B . n B 1 80 ALA 80 80 80 ALA ALA B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 ALA 82 82 82 ALA ALA B . n B 1 83 ASP 83 83 83 ASP ASP B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 PHE 85 85 85 PHE PHE B . n B 1 86 MET 86 86 86 MET MET B . n B 1 87 VAL 87 87 87 VAL VAL B . n B 1 88 PHE 88 88 88 PHE PHE B . n B 1 89 GLY 89 89 89 GLY GLY B . n B 1 90 GLY 90 90 90 GLY GLY B . n B 1 91 PHE 91 91 91 PHE PHE B . n B 1 92 THR 92 92 92 THR THR B . n B 1 93 THR 93 93 93 THR THR B . n B 1 94 THR 94 94 94 THR THR B . n B 1 95 LEU 95 95 95 LEU LEU B . n B 1 96 TYR 96 96 96 TYR TYR B . n B 1 97 THR 97 97 97 THR THR B . n B 1 98 SER 98 98 98 SER SER B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 HIS 100 100 100 HIS HIS B . n B 1 101 GLY 101 101 101 GLY GLY B . n B 1 102 TYR 102 102 102 TYR TYR B . n B 1 103 PHE 103 103 103 PHE PHE B . n B 1 104 VAL 104 104 104 VAL VAL B . n B 1 105 PHE 105 105 105 PHE PHE B . n B 1 106 GLY 106 106 106 GLY GLY B . n B 1 107 PRO 107 107 107 PRO PRO B . n B 1 108 THR 108 108 108 THR THR B . n B 1 109 GLY 109 109 109 GLY GLY B . n B 1 110 CYS 110 110 110 CYS CYS B . n B 1 111 ASN 111 111 111 ASN ASN B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 GLU 113 113 113 GLU GLU B . n B 1 114 GLY 114 114 114 GLY GLY B . n B 1 115 PHE 115 115 115 PHE PHE B . n B 1 116 PHE 116 116 116 PHE PHE B . n B 1 117 ALA 117 117 117 ALA ALA B . n B 1 118 THR 118 118 118 THR THR B . n B 1 119 LEU 119 119 119 LEU LEU B . n B 1 120 GLY 120 120 120 GLY GLY B . n B 1 121 GLY 121 121 121 GLY GLY B . n B 1 122 GLU 122 122 122 GLU GLU B . n B 1 123 ILE 123 123 123 ILE ILE B . n B 1 124 ALA 124 124 124 ALA ALA B . n B 1 125 LEU 125 125 125 LEU LEU B . n B 1 126 TRP 126 126 126 TRP TRP B . n B 1 127 SER 127 127 127 SER SER B . n B 1 128 LEU 128 128 128 LEU LEU B . n B 1 129 VAL 129 129 129 VAL VAL B . n B 1 130 VAL 130 130 130 VAL VAL B . n B 1 131 LEU 131 131 131 LEU LEU B . n B 1 132 ALA 132 132 132 ALA ALA B . n B 1 133 ILE 133 133 133 ILE ILE B . n B 1 134 GLU 134 134 134 GLU GLU B . n B 1 135 ARG 135 135 135 ARG ARG B . n B 1 136 TYR 136 136 136 TYR TYR B . n B 1 137 VAL 137 137 137 VAL VAL B . n B 1 138 VAL 138 138 138 VAL VAL B . n B 1 139 VAL 139 139 139 VAL VAL B . n B 1 140 CYS 140 140 140 CYS CYS B . n B 1 141 LYS 141 141 141 LYS LYS B . n B 1 142 PRO 142 142 142 PRO PRO B . n B 1 143 MET 143 143 143 MET MET B . n B 1 144 SER 144 144 144 SER SER B . n B 1 145 ASN 145 145 145 ASN ASN B . n B 1 146 PHE 146 146 146 PHE PHE B . n B 1 147 ARG 147 147 147 ARG ARG B . n B 1 148 PHE 148 148 148 PHE PHE B . n B 1 149 GLY 149 149 149 GLY GLY B . n B 1 150 GLU 150 150 150 GLU GLU B . n B 1 151 ASN 151 151 151 ASN ASN B . n B 1 152 HIS 152 152 152 HIS HIS B . n B 1 153 ALA 153 153 153 ALA ALA B . n B 1 154 ILE 154 154 154 ILE ILE B . n B 1 155 MET 155 155 155 MET MET B . n B 1 156 GLY 156 156 156 GLY GLY B . n B 1 157 VAL 157 157 157 VAL VAL B . n B 1 158 ALA 158 158 158 ALA ALA B . n B 1 159 PHE 159 159 159 PHE PHE B . n B 1 160 THR 160 160 160 THR THR B . n B 1 161 TRP 161 161 161 TRP TRP B . n B 1 162 VAL 162 162 162 VAL VAL B . n B 1 163 MET 163 163 163 MET MET B . n B 1 164 ALA 164 164 164 ALA ALA B . n B 1 165 LEU 165 165 165 LEU LEU B . n B 1 166 ALA 166 166 166 ALA ALA B . n B 1 167 CYS 167 167 167 CYS CYS B . n B 1 168 ALA 168 168 168 ALA ALA B . n B 1 169 ALA 169 169 169 ALA ALA B . n B 1 170 PRO 170 170 170 PRO PRO B . n B 1 171 PRO 171 171 171 PRO PRO B . n B 1 172 LEU 172 172 172 LEU LEU B . n B 1 173 VAL 173 173 173 VAL VAL B . n B 1 174 GLY 174 174 174 GLY GLY B . n B 1 175 TRP 175 175 175 TRP TRP B . n B 1 176 SER 176 176 176 SER SER B . n B 1 177 ARG 177 177 177 ARG ARG B . n B 1 178 TYR 178 178 178 TYR TYR B . n B 1 179 ILE 179 179 179 ILE ILE B . n B 1 180 PRO 180 180 180 PRO PRO B . n B 1 181 GLU 181 181 181 GLU GLU B . n B 1 182 GLY 182 182 182 GLY GLY B . n B 1 183 MET 183 183 183 MET MET B . n B 1 184 GLN 184 184 184 GLN GLN B . n B 1 185 CYS 185 185 185 CYS CYS B . n B 1 186 SER 186 186 186 SER SER B . n B 1 187 CYS 187 187 187 CYS CYS B . n B 1 188 GLY 188 188 188 GLY GLY B . n B 1 189 ILE 189 189 189 ILE ILE B . n B 1 190 ASP 190 190 190 ASP ASP B . n B 1 191 TYR 191 191 191 TYR TYR B . n B 1 192 TYR 192 192 192 TYR TYR B . n B 1 193 THR 193 193 193 THR THR B . n B 1 194 PRO 194 194 194 PRO PRO B . n B 1 195 HIS 195 195 195 HIS HIS B . n B 1 196 GLU 196 196 196 GLU GLU B . n B 1 197 GLU 197 197 197 GLU GLU B . n B 1 198 THR 198 198 198 THR THR B . n B 1 199 ASN 199 199 199 ASN ASN B . n B 1 200 ASN 200 200 200 ASN ASN B . n B 1 201 GLU 201 201 201 GLU GLU B . n B 1 202 SER 202 202 202 SER SER B . n B 1 203 PHE 203 203 203 PHE PHE B . n B 1 204 VAL 204 204 204 VAL VAL B . n B 1 205 ILE 205 205 205 ILE ILE B . n B 1 206 TYR 206 206 206 TYR TYR B . n B 1 207 MET 207 207 207 MET MET B . n B 1 208 PHE 208 208 208 PHE PHE B . n B 1 209 VAL 209 209 209 VAL VAL B . n B 1 210 VAL 210 210 210 VAL VAL B . n B 1 211 HIS 211 211 211 HIS HIS B . n B 1 212 PHE 212 212 212 PHE PHE B . n B 1 213 ILE 213 213 213 ILE ILE B . n B 1 214 ILE 214 214 214 ILE ILE B . n B 1 215 PRO 215 215 215 PRO PRO B . n B 1 216 LEU 216 216 216 LEU LEU B . n B 1 217 ILE 217 217 217 ILE ILE B . n B 1 218 VAL 218 218 218 VAL VAL B . n B 1 219 ILE 219 219 219 ILE ILE B . n B 1 220 PHE 220 220 220 PHE PHE B . n B 1 221 PHE 221 221 221 PHE PHE B . n B 1 222 CYS 222 222 222 CYS CYS B . n B 1 223 TYR 223 223 223 TYR TYR B . n B 1 224 GLY 224 224 224 GLY GLY B . n B 1 225 GLN 225 225 225 GLN GLN B . n B 1 226 LEU 226 226 226 LEU LEU B . n B 1 227 VAL 227 227 227 VAL VAL B . n B 1 228 PHE 228 228 228 PHE PHE B . n B 1 229 THR 229 229 229 THR THR B . n B 1 230 VAL 230 230 230 VAL VAL B . n B 1 231 LYS 231 231 231 LYS LYS B . n B 1 232 GLU 232 232 232 GLU GLU B . n B 1 233 ALA 233 233 233 ALA ALA B . n B 1 234 ALA 234 234 234 ALA ALA B . n B 1 235 ALA 235 235 235 ALA ALA B . n B 1 236 GLN 236 236 236 GLN GLN B . n B 1 237 GLN 237 237 237 GLN GLN B . n B 1 238 GLN 238 238 238 GLN GLN B . n B 1 239 GLU 239 239 239 GLU GLU B . n B 1 240 SER 240 240 240 SER SER B . n B 1 241 ALA 241 241 241 ALA ALA B . n B 1 242 THR 242 242 242 THR THR B . n B 1 243 THR 243 243 243 THR THR B . n B 1 244 GLN 244 244 244 GLN GLN B . n B 1 245 LYS 245 245 245 LYS LYS B . n B 1 246 ALA 246 246 246 ALA ALA B . n B 1 247 GLU 247 247 247 GLU GLU B . n B 1 248 LYS 248 248 248 LYS LYS B . n B 1 249 GLU 249 249 249 GLU GLU B . n B 1 250 VAL 250 250 250 VAL VAL B . n B 1 251 THR 251 251 251 THR THR B . n B 1 252 ARG 252 252 252 ARG ARG B . n B 1 253 MET 253 253 253 MET MET B . n B 1 254 VAL 254 254 254 VAL VAL B . n B 1 255 ILE 255 255 255 ILE ILE B . n B 1 256 ILE 256 256 256 ILE ILE B . n B 1 257 MET 257 257 257 MET MET B . n B 1 258 VAL 258 258 258 VAL VAL B . n B 1 259 ILE 259 259 259 ILE ILE B . n B 1 260 ALA 260 260 260 ALA ALA B . n B 1 261 PHE 261 261 261 PHE PHE B . n B 1 262 LEU 262 262 262 LEU LEU B . n B 1 263 ILE 263 263 263 ILE ILE B . n B 1 264 CYS 264 264 264 CYS CYS B . n B 1 265 TRP 265 265 265 TRP TRP B . n B 1 266 LEU 266 266 266 LEU LEU B . n B 1 267 PRO 267 267 267 PRO PRO B . n B 1 268 TYR 268 268 268 TYR TYR B . n B 1 269 ALA 269 269 269 ALA ALA B . n B 1 270 GLY 270 270 270 GLY GLY B . n B 1 271 VAL 271 271 271 VAL VAL B . n B 1 272 ALA 272 272 272 ALA ALA B . n B 1 273 PHE 273 273 273 PHE PHE B . n B 1 274 TYR 274 274 274 TYR TYR B . n B 1 275 ILE 275 275 275 ILE ILE B . n B 1 276 PHE 276 276 276 PHE PHE B . n B 1 277 THR 277 277 277 THR THR B . n B 1 278 HIS 278 278 278 HIS HIS B . n B 1 279 GLN 279 279 279 GLN GLN B . n B 1 280 GLY 280 280 280 GLY GLY B . n B 1 281 SER 281 281 281 SER SER B . n B 1 282 ASP 282 282 282 ASP ASP B . n B 1 283 PHE 283 283 283 PHE PHE B . n B 1 284 GLY 284 284 284 GLY GLY B . n B 1 285 PRO 285 285 285 PRO PRO B . n B 1 286 ILE 286 286 286 ILE ILE B . n B 1 287 PHE 287 287 287 PHE PHE B . n B 1 288 MET 288 288 288 MET MET B . n B 1 289 THR 289 289 289 THR THR B . n B 1 290 ILE 290 290 290 ILE ILE B . n B 1 291 PRO 291 291 291 PRO PRO B . n B 1 292 ALA 292 292 292 ALA ALA B . n B 1 293 PHE 293 293 293 PHE PHE B . n B 1 294 PHE 294 294 294 PHE PHE B . n B 1 295 ALA 295 295 295 ALA ALA B . n B 1 296 LYS 296 296 296 LYS LYS B . n B 1 297 THR 297 297 297 THR THR B . n B 1 298 SER 298 298 298 SER SER B . n B 1 299 ALA 299 299 299 ALA ALA B . n B 1 300 VAL 300 300 300 VAL VAL B . n B 1 301 TYR 301 301 301 TYR TYR B . n B 1 302 ASN 302 302 302 ASN ASN B . n B 1 303 PRO 303 303 303 PRO PRO B . n B 1 304 VAL 304 304 304 VAL VAL B . n B 1 305 ILE 305 305 305 ILE ILE B . n B 1 306 TYR 306 306 306 TYR TYR B . n B 1 307 ILE 307 307 307 ILE ILE B . n B 1 308 MET 308 308 308 MET MET B . n B 1 309 MET 309 309 309 MET MET B . n B 1 310 ASN 310 310 310 ASN ASN B . n B 1 311 LYS 311 311 311 LYS LYS B . n B 1 312 GLN 312 312 312 GLN GLN B . n B 1 313 PHE 313 313 313 PHE PHE B . n B 1 314 ARG 314 314 314 ARG ARG B . n B 1 315 ASN 315 315 315 ASN ASN B . n B 1 316 CYS 316 316 316 CYS CYS B . n B 1 317 MET 317 317 317 MET MET B . n B 1 318 VAL 318 318 318 VAL VAL B . n B 1 319 THR 319 319 319 THR THR B . n B 1 320 THR 320 320 320 THR THR B . n B 1 321 LEU 321 321 321 LEU LEU B . n B 1 322 CYS 322 322 322 CYS CYS B . n B 1 323 CYS 323 323 323 CYS CYS B . n B 1 324 GLY 324 324 324 GLY GLY B . n B 1 325 LYS 325 325 325 LYS LYS B . n B 1 326 ASN 326 326 ? ? ? B . n B 1 327 PRO 327 327 ? ? ? B . n B 1 328 LEU 328 328 ? ? ? B . n B 1 329 GLY 329 329 ? ? ? B . n B 1 330 ASP 330 330 ? ? ? B . n B 1 331 ASP 331 331 ? ? ? B . n B 1 332 GLU 332 332 ? ? ? B . n B 1 333 ALA 333 333 ? ? ? B . n B 1 334 SER 334 334 ? ? ? B . n B 1 335 THR 335 335 ? ? ? B . n B 1 336 THR 336 336 ? ? ? B . n B 1 337 VAL 337 337 ? ? ? B . n B 1 338 SER 338 338 ? ? ? B . n B 1 339 LYS 339 339 ? ? ? B . n B 1 340 THR 340 340 ? ? ? B . n B 1 341 GLU 341 341 ? ? ? B . n B 1 342 THR 342 342 ? ? ? B . n B 1 343 SER 343 343 ? ? ? B . n B 1 344 GLN 344 344 ? ? ? B . n B 1 345 VAL 345 345 ? ? ? B . n B 1 346 ALA 346 346 ? ? ? B . n B 1 347 PRO 347 347 ? ? ? B . n B 1 348 ALA 348 348 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-08-21 2 'Structure model' 1 1 2019-10-09 3 'Structure model' 1 2 2019-12-11 4 'Structure model' 1 3 2019-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' pdbx_audit_support 4 4 'Structure model' atom_sites # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 2 'Structure model' '_citation_author.name' 6 3 'Structure model' '_pdbx_audit_support.funding_organization' 7 4 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 8 4 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 9 4 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.15rc1_3420: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 6OFJ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 100 _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6OFJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 762000 _em_3d_reconstruction.resolution 4.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name Rhodopsin _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6OFJ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6OFJ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6OFJ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6OFJ _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 A THR 4 ? ? O A PHE 13 ? ? 2.14 2 1 OG1 B THR 4 ? ? O B PHE 13 ? ? 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 2 ? ? -95.90 33.82 2 1 SER A 22 ? ? -52.04 108.73 3 1 LYS A 66 ? ? -95.82 55.10 4 1 LYS A 141 ? ? 65.98 66.10 5 1 MET A 183 ? ? -94.18 31.07 6 1 ASN A 199 ? ? 60.60 62.50 7 1 PHE A 212 ? ? -94.23 -61.39 8 1 GLN A 238 ? ? 60.87 66.32 9 1 SER A 281 ? ? -74.08 -70.28 10 1 ASP A 282 ? ? -178.84 -179.82 11 1 ASN B 2 ? ? -95.91 33.89 12 1 SER B 22 ? ? -52.00 108.66 13 1 LYS B 66 ? ? -95.76 55.12 14 1 LYS B 141 ? ? 65.93 66.12 15 1 MET B 183 ? ? -94.20 31.10 16 1 ASN B 199 ? ? 60.58 62.52 17 1 PHE B 212 ? ? -94.18 -61.38 18 1 GLN B 238 ? ? 60.81 66.30 19 1 SER B 281 ? ? -74.07 -70.23 20 1 ASP B 282 ? ? -178.87 -179.82 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 326 ? A ASN 326 2 1 Y 1 A PRO 327 ? A PRO 327 3 1 Y 1 A LEU 328 ? A LEU 328 4 1 Y 1 A GLY 329 ? A GLY 329 5 1 Y 1 A ASP 330 ? A ASP 330 6 1 Y 1 A ASP 331 ? A ASP 331 7 1 Y 1 A GLU 332 ? A GLU 332 8 1 Y 1 A ALA 333 ? A ALA 333 9 1 Y 1 A SER 334 ? A SER 334 10 1 Y 1 A THR 335 ? A THR 335 11 1 Y 1 A THR 336 ? A THR 336 12 1 Y 1 A VAL 337 ? A VAL 337 13 1 Y 1 A SER 338 ? A SER 338 14 1 Y 1 A LYS 339 ? A LYS 339 15 1 Y 1 A THR 340 ? A THR 340 16 1 Y 1 A GLU 341 ? A GLU 341 17 1 Y 1 A THR 342 ? A THR 342 18 1 Y 1 A SER 343 ? A SER 343 19 1 Y 1 A GLN 344 ? A GLN 344 20 1 Y 1 A VAL 345 ? A VAL 345 21 1 Y 1 A ALA 346 ? A ALA 346 22 1 Y 1 A PRO 347 ? A PRO 347 23 1 Y 1 A ALA 348 ? A ALA 348 24 1 Y 1 B ASN 326 ? B ASN 326 25 1 Y 1 B PRO 327 ? B PRO 327 26 1 Y 1 B LEU 328 ? B LEU 328 27 1 Y 1 B GLY 329 ? B GLY 329 28 1 Y 1 B ASP 330 ? B ASP 330 29 1 Y 1 B ASP 331 ? B ASP 331 30 1 Y 1 B GLU 332 ? B GLU 332 31 1 Y 1 B ALA 333 ? B ALA 333 32 1 Y 1 B SER 334 ? B SER 334 33 1 Y 1 B THR 335 ? B THR 335 34 1 Y 1 B THR 336 ? B THR 336 35 1 Y 1 B VAL 337 ? B VAL 337 36 1 Y 1 B SER 338 ? B SER 338 37 1 Y 1 B LYS 339 ? B LYS 339 38 1 Y 1 B THR 340 ? B THR 340 39 1 Y 1 B GLU 341 ? B GLU 341 40 1 Y 1 B THR 342 ? B THR 342 41 1 Y 1 B SER 343 ? B SER 343 42 1 Y 1 B GLN 344 ? B GLN 344 43 1 Y 1 B VAL 345 ? B VAL 345 44 1 Y 1 B ALA 346 ? B ALA 346 45 1 Y 1 B PRO 347 ? B PRO 347 46 1 Y 1 B ALA 348 ? B ALA 348 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9913 _em_entity_assembly_naturalsource.organ Eye _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Bos taurus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue Retina # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate 'Volta phase plate' _em_imaging_optics.sph_aberration_corrector ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'SYMMETRY DETERMINATION' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? RELION ? 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Eye Institute (NIH/NEI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #