HEADER HYDROLASE 01-APR-19 6OFT TITLE THE CRYSTAL STRUCTURE OF THE FIRST HALF OF THE PERIPLASMIC PROTEASE TITLE 2 PQQL FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ZINC PROTEASE PQQL; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.24.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PQQL, YDDC, B1494, JW1489; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41 KEYWDS PROTEASE, M16 FAMILY, PROCESSING PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.GRINTER REVDAT 3 11-OCT-23 6OFT 1 REMARK REVDAT 2 30-OCT-19 6OFT 1 JRNL REVDAT 1 02-OCT-19 6OFT 0 JRNL AUTH R.GRINTER,P.M.LEUNG,L.C.WIJEYEWICKREMA,D.LITTLER,S.BECKHAM, JRNL AUTH 2 R.N.PIKE,D.WALKER,C.GREENING,T.LITHGOW JRNL TITL PROTEASE-ASSOCIATED IMPORT SYSTEMS ARE WIDESPREAD IN JRNL TITL 2 GRAM-NEGATIVE BACTERIA. JRNL REF PLOS GENET. V. 15 08435 2019 JRNL REFN ESSN 1553-7404 JRNL PMID 31613892 JRNL DOI 10.1371/JOURNAL.PGEN.1008435 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 71806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3563 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1437 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2344 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1358 REMARK 3 BIN R VALUE (WORKING SET) : 0.2353 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7593 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 395 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.46020 REMARK 3 B22 (A**2) : -8.12400 REMARK 3 B33 (A**2) : 2.66370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.25850 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.171 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.150 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.173 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.152 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7762 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10526 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2767 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1347 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7762 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 999 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9045 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.20 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 67.0696 19.4029 34.9638 REMARK 3 T TENSOR REMARK 3 T11: -0.0152 T22: -0.0556 REMARK 3 T33: -0.0722 T12: -0.0211 REMARK 3 T13: 0.0167 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.5428 L22: 0.4410 REMARK 3 L33: 0.6060 L12: -0.4032 REMARK 3 L13: 0.2188 L23: -0.1007 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: 0.0441 S13: -0.0561 REMARK 3 S21: -0.0263 S22: 0.0066 S23: 0.0444 REMARK 3 S31: -0.0150 S32: 0.0131 S33: -0.0219 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 67.9852 -11.0818 10.7341 REMARK 3 T TENSOR REMARK 3 T11: -0.0290 T22: -0.0447 REMARK 3 T33: -0.1686 T12: 0.0024 REMARK 3 T13: -0.0107 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.9364 L22: 0.3151 REMARK 3 L33: 0.6908 L12: 0.4670 REMARK 3 L13: -0.9989 L23: -0.0302 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: 0.1526 S13: 0.0262 REMARK 3 S21: -0.0166 S22: -0.0011 S23: 0.0604 REMARK 3 S31: -0.1623 S32: -0.0880 S33: -0.0832 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OFT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : YES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 21.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 22.30 REMARK 200 R MERGE (I) : 0.34800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.10 REMARK 200 R MERGE FOR SHELL (I) : 2.00900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3AMJ REMARK 200 REMARK 200 REMARK: DIAMOND SHAPED PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE-CITRATE BUFFER, 0.2 M REMARK 280 NACL, 20% PEG 8000, PH 4.2, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.22000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 496 REMARK 465 ARG A 497 REMARK 465 PRO B 495 REMARK 465 GLY B 496 REMARK 465 ARG B 497 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 65 34.22 -80.46 REMARK 500 TRP A 93 74.70 -118.55 REMARK 500 ARG A 111 -63.94 -120.98 REMARK 500 ASN A 148 2.98 -154.04 REMARK 500 GLN A 172 66.72 -70.00 REMARK 500 ALA A 251 46.18 -72.00 REMARK 500 LEU A 326 76.13 -117.72 REMARK 500 ASP A 354 -111.06 62.17 REMARK 500 HIS B 65 34.54 -77.13 REMARK 500 TRP B 93 74.54 -118.26 REMARK 500 ARG B 111 -61.47 -103.31 REMARK 500 SER B 118 -165.74 -119.76 REMARK 500 ASN B 148 5.05 -151.16 REMARK 500 ASP B 354 -111.49 60.69 REMARK 500 LYS B 432 -62.87 -104.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1002 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS DOMAIN OF PQQL WAS CRYSTALLISED BY IN SITU TRYPSINATION OF THE REMARK 999 FULL-LENGTH PROTEIN. THIS WAS THE SEQUENCE OF THE PURIFIED PROTEIN REMARK 999 THAT WAS ADDED TO THE DROP (WITH A SMALL QUANTITY OF TRYPSIN): REMARK 999 AALPQDEKLITGQLDNGLRYMIYPHAHPKDQVNLWLQIHTGSLQEEDNELGVAHFVEHMMFNGTKTWP REMARK 999 GNKVIETFESMGLRFGRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAERG REMARK 999 VITEEWRAHQDAKWRTSQARRPFLLANTRNLDREPIGLMDTVATVTPAQLRQFYQRWYQPNNMTFIVV REMARK 999 GDIDSKEALALIKDNLSKLPANKAAENRVWPTKAENHLRFNIINDKENRVNGIALYYRLPMVQVNDEQ REMARK 999 SFIEQAEWSMLVQLFNQRLQERIQSGELKTISGGTARSVKIAPDYQSLFFRVNARDDNMQDAANALMA REMARK 999 ELATIDQHGFSAEELDDVKSTRLTWLKNAVDQQAERDLRMLTSRLASSSLNNTPFLSPEETYQLSKRL REMARK 999 WQQITVQSLAEKWQQLRKNQDAFWEQMVNNEVAAKKALSPAAILALEKEYANKKLAAYVFPGRNLSLT REMARK 999 VDADPQAEISSKETLAENLTSLTLSNGARVILAKSAGEEQKLQIIAVSNKGDLSFPAQQKSLIALANK REMARK 999 AVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMNTLLSVSARTNNPEPGFQLINQRITHSTINDNIWA REMARK 999 SLQNAQIQALKTLDQRPAEKFAQQMYETRYADDRTKLLQENQIAQFTAADALAADRQLFSSPADITFV REMARK 999 IVGNVAEDKLVALITRYLGSIKHSDSPLAAGKPLTRATDNASVTVKEQNEPVAQVSQWKRYDSRTPVN REMARK 999 LPTRMALDAFNVALAKDLRVNIREQASGAYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEV REMARK 999 MVKRLAKGISEQELNEYQQNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQMTVENVN REMARK 999 TAVKQYLSHPVNTYTGVLLPKLEHHHHHH THE MOST LIKELY CLEAVAGE POINT FOR TRY REMARK 999 PSIN IS ARG497, MEANING THE PROTEIN IN THE CRYSTAL CONSISTS OF THE REMARK 999 FIRST 497 AMINO ACIDS, MINUS THE FIRST 26 AMINO ACIDS AS REPORTED. DBREF 6OFT A 27 497 UNP P31828 PQQL_ECOLI 27 497 DBREF 6OFT B 27 497 UNP P31828 PQQL_ECOLI 27 497 SEQRES 1 A 471 ALA ALA LEU PRO GLN ASP GLU LYS LEU ILE THR GLY GLN SEQRES 2 A 471 LEU ASP ASN GLY LEU ARG TYR MET ILE TYR PRO HIS ALA SEQRES 3 A 471 HIS PRO LYS ASP GLN VAL ASN LEU TRP LEU GLN ILE HIS SEQRES 4 A 471 THR GLY SER LEU GLN GLU GLU ASP ASN GLU LEU GLY VAL SEQRES 5 A 471 ALA HIS PHE VAL GLU HIS MET MET PHE ASN GLY THR LYS SEQRES 6 A 471 THR TRP PRO GLY ASN LYS VAL ILE GLU THR PHE GLU SER SEQRES 7 A 471 MET GLY LEU ARG PHE GLY ARG ASP VAL ASN ALA TYR THR SEQRES 8 A 471 SER TYR ASP GLU THR VAL TYR GLN VAL SER LEU PRO THR SEQRES 9 A 471 THR GLN LYS GLN ASN LEU GLN GLN VAL MET ALA ILE PHE SEQRES 10 A 471 SER GLU TRP SER ASN ALA ALA THR PHE GLU LYS LEU GLU SEQRES 11 A 471 VAL ASP ALA GLU ARG GLY VAL ILE THR GLU GLU TRP ARG SEQRES 12 A 471 ALA HIS GLN ASP ALA LYS TRP ARG THR SER GLN ALA ARG SEQRES 13 A 471 ARG PRO PHE LEU LEU ALA ASN THR ARG ASN LEU ASP ARG SEQRES 14 A 471 GLU PRO ILE GLY LEU MET ASP THR VAL ALA THR VAL THR SEQRES 15 A 471 PRO ALA GLN LEU ARG GLN PHE TYR GLN ARG TRP TYR GLN SEQRES 16 A 471 PRO ASN ASN MET THR PHE ILE VAL VAL GLY ASP ILE ASP SEQRES 17 A 471 SER LYS GLU ALA LEU ALA LEU ILE LYS ASP ASN LEU SER SEQRES 18 A 471 LYS LEU PRO ALA ASN LYS ALA ALA GLU ASN ARG VAL TRP SEQRES 19 A 471 PRO THR LYS ALA GLU ASN HIS LEU ARG PHE ASN ILE ILE SEQRES 20 A 471 ASN ASP LYS GLU ASN ARG VAL ASN GLY ILE ALA LEU TYR SEQRES 21 A 471 TYR ARG LEU PRO MET VAL GLN VAL ASN ASP GLU GLN SER SEQRES 22 A 471 PHE ILE GLU GLN ALA GLU TRP SER MET LEU VAL GLN LEU SEQRES 23 A 471 PHE ASN GLN ARG LEU GLN GLU ARG ILE GLN SER GLY GLU SEQRES 24 A 471 LEU LYS THR ILE SER GLY GLY THR ALA ARG SER VAL LYS SEQRES 25 A 471 ILE ALA PRO ASP TYR GLN SER LEU PHE PHE ARG VAL ASN SEQRES 26 A 471 ALA ARG ASP ASP ASN MET GLN ASP ALA ALA ASN ALA LEU SEQRES 27 A 471 MET ALA GLU LEU ALA THR ILE ASP GLN HIS GLY PHE SER SEQRES 28 A 471 ALA GLU GLU LEU ASP ASP VAL LYS SER THR ARG LEU THR SEQRES 29 A 471 TRP LEU LYS ASN ALA VAL ASP GLN GLN ALA GLU ARG ASP SEQRES 30 A 471 LEU ARG MET LEU THR SER ARG LEU ALA SER SER SER LEU SEQRES 31 A 471 ASN ASN THR PRO PHE LEU SER PRO GLU GLU THR TYR GLN SEQRES 32 A 471 LEU SER LYS ARG LEU TRP GLN GLN ILE THR VAL GLN SER SEQRES 33 A 471 LEU ALA GLU LYS TRP GLN GLN LEU ARG LYS ASN GLN ASP SEQRES 34 A 471 ALA PHE TRP GLU GLN MET VAL ASN ASN GLU VAL ALA ALA SEQRES 35 A 471 LYS LYS ALA LEU SER PRO ALA ALA ILE LEU ALA LEU GLU SEQRES 36 A 471 LYS GLU TYR ALA ASN LYS LYS LEU ALA ALA TYR VAL PHE SEQRES 37 A 471 PRO GLY ARG SEQRES 1 B 471 ALA ALA LEU PRO GLN ASP GLU LYS LEU ILE THR GLY GLN SEQRES 2 B 471 LEU ASP ASN GLY LEU ARG TYR MET ILE TYR PRO HIS ALA SEQRES 3 B 471 HIS PRO LYS ASP GLN VAL ASN LEU TRP LEU GLN ILE HIS SEQRES 4 B 471 THR GLY SER LEU GLN GLU GLU ASP ASN GLU LEU GLY VAL SEQRES 5 B 471 ALA HIS PHE VAL GLU HIS MET MET PHE ASN GLY THR LYS SEQRES 6 B 471 THR TRP PRO GLY ASN LYS VAL ILE GLU THR PHE GLU SER SEQRES 7 B 471 MET GLY LEU ARG PHE GLY ARG ASP VAL ASN ALA TYR THR SEQRES 8 B 471 SER TYR ASP GLU THR VAL TYR GLN VAL SER LEU PRO THR SEQRES 9 B 471 THR GLN LYS GLN ASN LEU GLN GLN VAL MET ALA ILE PHE SEQRES 10 B 471 SER GLU TRP SER ASN ALA ALA THR PHE GLU LYS LEU GLU SEQRES 11 B 471 VAL ASP ALA GLU ARG GLY VAL ILE THR GLU GLU TRP ARG SEQRES 12 B 471 ALA HIS GLN ASP ALA LYS TRP ARG THR SER GLN ALA ARG SEQRES 13 B 471 ARG PRO PHE LEU LEU ALA ASN THR ARG ASN LEU ASP ARG SEQRES 14 B 471 GLU PRO ILE GLY LEU MET ASP THR VAL ALA THR VAL THR SEQRES 15 B 471 PRO ALA GLN LEU ARG GLN PHE TYR GLN ARG TRP TYR GLN SEQRES 16 B 471 PRO ASN ASN MET THR PHE ILE VAL VAL GLY ASP ILE ASP SEQRES 17 B 471 SER LYS GLU ALA LEU ALA LEU ILE LYS ASP ASN LEU SER SEQRES 18 B 471 LYS LEU PRO ALA ASN LYS ALA ALA GLU ASN ARG VAL TRP SEQRES 19 B 471 PRO THR LYS ALA GLU ASN HIS LEU ARG PHE ASN ILE ILE SEQRES 20 B 471 ASN ASP LYS GLU ASN ARG VAL ASN GLY ILE ALA LEU TYR SEQRES 21 B 471 TYR ARG LEU PRO MET VAL GLN VAL ASN ASP GLU GLN SER SEQRES 22 B 471 PHE ILE GLU GLN ALA GLU TRP SER MET LEU VAL GLN LEU SEQRES 23 B 471 PHE ASN GLN ARG LEU GLN GLU ARG ILE GLN SER GLY GLU SEQRES 24 B 471 LEU LYS THR ILE SER GLY GLY THR ALA ARG SER VAL LYS SEQRES 25 B 471 ILE ALA PRO ASP TYR GLN SER LEU PHE PHE ARG VAL ASN SEQRES 26 B 471 ALA ARG ASP ASP ASN MET GLN ASP ALA ALA ASN ALA LEU SEQRES 27 B 471 MET ALA GLU LEU ALA THR ILE ASP GLN HIS GLY PHE SER SEQRES 28 B 471 ALA GLU GLU LEU ASP ASP VAL LYS SER THR ARG LEU THR SEQRES 29 B 471 TRP LEU LYS ASN ALA VAL ASP GLN GLN ALA GLU ARG ASP SEQRES 30 B 471 LEU ARG MET LEU THR SER ARG LEU ALA SER SER SER LEU SEQRES 31 B 471 ASN ASN THR PRO PHE LEU SER PRO GLU GLU THR TYR GLN SEQRES 32 B 471 LEU SER LYS ARG LEU TRP GLN GLN ILE THR VAL GLN SER SEQRES 33 B 471 LEU ALA GLU LYS TRP GLN GLN LEU ARG LYS ASN GLN ASP SEQRES 34 B 471 ALA PHE TRP GLU GLN MET VAL ASN ASN GLU VAL ALA ALA SEQRES 35 B 471 LYS LYS ALA LEU SER PRO ALA ALA ILE LEU ALA LEU GLU SEQRES 36 B 471 LYS GLU TYR ALA ASN LYS LYS LEU ALA ALA TYR VAL PHE SEQRES 37 B 471 PRO GLY ARG HET GOL A1001 14 HET PO4 A1002 5 HET CL A1003 1 HET CL A1004 1 HET GOL B1001 14 HET PO4 B1002 5 HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 CL 2(CL 1-) FORMUL 9 HOH *395(H2 O) HELIX 1 AA1 GLY A 67 GLU A 71 5 5 HELIX 2 AA2 GLY A 77 MET A 86 1 10 HELIX 3 AA3 ASN A 96 SER A 104 1 9 HELIX 4 AA4 GLN A 132 ALA A 149 1 18 HELIX 5 AA5 GLU A 153 HIS A 171 1 19 HELIX 6 AA6 ASP A 173 LEU A 187 1 15 HELIX 7 AA7 THR A 190 ARG A 195 5 6 HELIX 8 AA8 LEU A 200 VAL A 207 1 8 HELIX 9 AA9 THR A 208 TYR A 220 1 13 HELIX 10 AB1 GLN A 221 ASN A 223 5 3 HELIX 11 AB2 ASP A 234 SER A 247 1 14 HELIX 12 AB3 ASP A 296 SER A 323 1 28 HELIX 13 AB4 ASN A 356 GLY A 375 1 20 HELIX 14 AB5 SER A 377 GLN A 398 1 22 HELIX 15 AB6 GLN A 399 ARG A 402 5 4 HELIX 16 AB7 ASP A 403 ASN A 418 1 16 HELIX 17 AB8 SER A 423 TRP A 435 1 13 HELIX 18 AB9 GLN A 436 ILE A 438 5 3 HELIX 19 AC1 THR A 439 LYS A 452 1 14 HELIX 20 AC2 ASN A 464 ALA A 471 1 8 HELIX 21 AC3 SER A 473 ASN A 486 1 14 HELIX 22 AC4 GLY B 67 GLU B 71 5 5 HELIX 23 AC5 GLY B 77 MET B 86 1 10 HELIX 24 AC6 PHE B 87 GLY B 89 5 3 HELIX 25 AC7 ASN B 96 MET B 105 1 10 HELIX 26 AC8 GLN B 132 ALA B 149 1 18 HELIX 27 AC9 GLU B 153 HIS B 171 1 19 HELIX 28 AD1 ASP B 173 LEU B 187 1 15 HELIX 29 AD2 ARG B 191 ARG B 195 5 5 HELIX 30 AD3 LEU B 200 VAL B 207 1 8 HELIX 31 AD4 THR B 208 TYR B 220 1 13 HELIX 32 AD5 GLN B 221 ASN B 223 5 3 HELIX 33 AD6 ASP B 234 SER B 247 1 14 HELIX 34 AD7 ASP B 296 GLY B 324 1 29 HELIX 35 AD8 ASN B 356 GLY B 375 1 20 HELIX 36 AD9 SER B 377 GLN B 399 1 23 HELIX 37 AE1 ALA B 400 ARG B 402 5 3 HELIX 38 AE2 ASP B 403 ASN B 418 1 16 HELIX 39 AE3 SER B 423 LEU B 434 1 12 HELIX 40 AE4 TRP B 435 ILE B 438 5 4 HELIX 41 AE5 THR B 439 LYS B 452 1 14 HELIX 42 AE6 ASN B 464 ALA B 471 1 8 HELIX 43 AE7 SER B 473 LYS B 487 1 15 SHEET 1 AA1 6 ILE A 36 GLN A 39 0 SHEET 2 AA1 6 ARG A 45 PRO A 50 -1 O ILE A 48 N ILE A 36 SHEET 3 AA1 6 MET A 225 GLY A 231 1 O VAL A 229 N MET A 47 SHEET 4 AA1 6 GLN A 57 ILE A 64 -1 N TRP A 61 O ILE A 228 SHEET 5 AA1 6 THR A 122 PRO A 129 -1 O THR A 122 N ILE A 64 SHEET 6 AA1 6 VAL A 113 THR A 117 -1 N ASN A 114 O GLN A 125 SHEET 1 AA2 5 LEU A 268 ASN A 274 0 SHEET 2 AA2 5 ALA A 456 VAL A 462 1 O GLN A 460 N ILE A 273 SHEET 3 AA2 5 GLY A 282 PRO A 290 -1 N ALA A 284 O GLU A 459 SHEET 4 AA2 5 TYR A 343 ALA A 352 -1 O GLN A 344 N LEU A 289 SHEET 5 AA2 5 ILE A 329 ALA A 340 -1 N THR A 333 O ARG A 349 SHEET 1 AA3 6 ILE B 36 GLN B 39 0 SHEET 2 AA3 6 ARG B 45 PRO B 50 -1 O ILE B 48 N ILE B 36 SHEET 3 AA3 6 MET B 225 GLY B 231 1 O VAL B 229 N MET B 47 SHEET 4 AA3 6 GLN B 57 ILE B 64 -1 N TRP B 61 O ILE B 228 SHEET 5 AA3 6 THR B 122 PRO B 129 -1 O THR B 122 N ILE B 64 SHEET 6 AA3 6 VAL B 113 THR B 117 -1 N ASN B 114 O GLN B 125 SHEET 1 AA4 5 LEU B 268 ASN B 274 0 SHEET 2 AA4 5 ALA B 456 VAL B 462 1 O GLN B 460 N ILE B 273 SHEET 3 AA4 5 GLY B 282 PRO B 290 -1 N TYR B 286 O PHE B 457 SHEET 4 AA4 5 TYR B 343 ALA B 352 -1 O VAL B 350 N ILE B 283 SHEET 5 AA4 5 ILE B 329 ALA B 340 -1 N THR B 333 O ARG B 349 CISPEP 1 HIS A 53 PRO A 54 0 3.27 CISPEP 2 HIS B 53 PRO B 54 0 -9.57 SITE 1 AC1 5 TYR A 287 ARG A 451 TRP A 458 LEU A 478 SITE 2 AC1 5 GLU A 481 SITE 1 AC2 7 LYS A 34 TYR A 49 PRO A 50 HIS A 51 SITE 2 AC2 7 GLN A 399 ARG A 402 HOH A1129 SITE 1 AC3 2 HIS A 267 LEU A 268 SITE 1 AC4 3 GLU A 196 PRO A 197 ILE A 198 SITE 1 AC5 5 TYR B 287 ARG B 451 TRP B 458 LEU B 478 SITE 2 AC5 5 GLU B 481 SITE 1 AC6 6 LYS B 34 TYR B 49 PRO B 50 HIS B 51 SITE 2 AC6 6 GLN B 399 ARG B 402 CRYST1 71.070 84.440 92.070 90.00 102.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014071 0.000000 0.003052 0.00000 SCALE2 0.000000 0.011843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011114 0.00000