HEADER DNA BINDING PROTEIN/DNA 02-APR-19 6OGJ TITLE MECP2 MBD IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-CPG-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MECP2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*GP*GP*AP*GP*TP*GP*TP*AP*GP*GP*C)-3'); COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*GP*CP*CP*TP*AP*CP*AP*CP*TP*CP*CP*G)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MECP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-RIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-CH; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS MBD, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.LEI,W.TEMPEL,C.H.ARROWSMITH,C.BOUNTRA,A.M.EDWARDS,J.MIN,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 3 11-OCT-23 6OGJ 1 REMARK REVDAT 2 20-NOV-19 6OGJ 1 JRNL REVDAT 1 01-MAY-19 6OGJ 0 JRNL AUTH M.LEI,W.TEMPEL,S.CHEN,K.LIU,J.MIN JRNL TITL PLASTICITY AT THE DNA RECOGNITION SITE OF THE MECP2 JRNL TITL 2 MCG-BINDING DOMAIN. JRNL REF BIOCHIM BIOPHYS ACTA GENE V.1862 94409 2019 JRNL REF 2 REGUL MECH JRNL REFN ISSN 1876-4320 JRNL PMID 31356990 JRNL DOI 10.1016/J.BBAGRM.2019.194409 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 18390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1109 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1339 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1169 REMARK 3 NUCLEIC ACID ATOMS : 485 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.79000 REMARK 3 B22 (A**2) : 4.04000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.441 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1743 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1309 ; 0.002 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2469 ; 1.500 ; 1.491 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3033 ; 1.327 ; 1.881 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 157 ; 5.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;27.181 ;22.037 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 164 ;13.383 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.315 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 228 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1680 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 390 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 633 ; 1.092 ; 2.445 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 634 ; 1.091 ; 2.447 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 789 ; 1.799 ; 3.660 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9267 4.9136 1.4161 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.0426 REMARK 3 T33: 0.1664 T12: -0.0169 REMARK 3 T13: 0.0084 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 3.6381 L22: 2.9303 REMARK 3 L33: 2.4303 L12: -0.8073 REMARK 3 L13: 0.4670 L23: -0.6846 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: -0.0937 S13: -0.2168 REMARK 3 S21: -0.0531 S22: -0.0299 S23: -0.0730 REMARK 3 S31: 0.1631 S32: 0.1782 S33: 0.0190 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 169 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2228 33.3963 18.0692 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.0021 REMARK 3 T33: 0.2868 T12: 0.0126 REMARK 3 T13: 0.0070 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 3.1149 L22: 1.6214 REMARK 3 L33: 1.6273 L12: 0.1663 REMARK 3 L13: 0.4740 L23: 0.0971 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: 0.0523 S13: 0.4978 REMARK 3 S21: 0.0418 S22: -0.0101 S23: -0.0550 REMARK 3 S31: -0.2514 S32: 0.0169 S33: -0.0201 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 12 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7392 19.1199 1.6989 REMARK 3 T TENSOR REMARK 3 T11: 0.2080 T22: 0.0600 REMARK 3 T33: 0.1704 T12: -0.0097 REMARK 3 T13: -0.0058 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.5182 L22: 0.5679 REMARK 3 L33: 4.0325 L12: -0.5079 REMARK 3 L13: -0.3946 L23: 0.7060 REMARK 3 S TENSOR REMARK 3 S11: 0.1077 S12: -0.0329 S13: 0.0325 REMARK 3 S21: -0.0520 S22: 0.0443 S23: -0.0184 REMARK 3 S31: -0.1903 S32: 0.1696 S33: -0.1520 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7923 19.4086 1.7873 REMARK 3 T TENSOR REMARK 3 T11: 0.2160 T22: 0.1083 REMARK 3 T33: 0.1377 T12: 0.0115 REMARK 3 T13: -0.0021 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.7942 L22: 0.9882 REMARK 3 L33: 4.6578 L12: -0.8052 REMARK 3 L13: -1.0847 L23: 0.6778 REMARK 3 S TENSOR REMARK 3 S11: 0.1238 S12: -0.0349 S13: 0.1157 REMARK 3 S21: -0.0963 S22: 0.1343 S23: -0.1300 REMARK 3 S31: 0.0816 S32: 0.0695 S33: -0.2580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6OGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000235237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19585 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 1.11100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6C1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 2000 MME, 0.2M POTASSIUM REMARK 280 BROMIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.09050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 77 REMARK 465 SER A 78 REMARK 465 ALA A 79 REMARK 465 SER A 80 REMARK 465 PRO A 81 REMARK 465 LYS A 82 REMARK 465 GLN A 83 REMARK 465 ARG A 84 REMARK 465 ARG A 85 REMARK 465 SER A 86 REMARK 465 ILE A 87 REMARK 465 ILE A 88 REMARK 465 ARG A 89 REMARK 465 ASP A 90 REMARK 465 ARG A 91 REMARK 465 GLY A 92 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 ALA B 77 REMARK 465 SER B 78 REMARK 465 ALA B 79 REMARK 465 SER B 80 REMARK 465 PRO B 81 REMARK 465 LYS B 82 REMARK 465 GLN B 83 REMARK 465 ARG B 84 REMARK 465 ARG B 85 REMARK 465 SER B 86 REMARK 465 HIS B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 102 CD OE1 OE2 REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 119 CD CE NZ REMARK 470 GLN A 128 CG CD OE1 NE2 REMARK 470 LYS A 135 NZ REMARK 470 LYS A 144 CD CE NZ REMARK 470 THR A 148 OG1 CG2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 SER A 166 OG REMARK 470 HIS A 169 C O CB CG ND1 CD2 CE1 REMARK 470 HIS A 169 NE2 REMARK 470 ILE B 87 CG1 CG2 CD1 REMARK 470 ARG B 89 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 90 CG OD1 OD2 REMARK 470 ARG B 91 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 LYS B 107 CD CE NZ REMARK 470 LYS B 109 CD CE NZ REMARK 470 LYS B 112 NZ REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 119 CD CE NZ REMARK 470 GLU B 143 CD OE1 OE2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 ASP B 147 CG OD1 OD2 REMARK 470 THR B 148 OG1 CG2 REMARK 470 SER B 149 OG REMARK 470 ARG B 162 CG CD NE CZ NH1 NH2 REMARK 470 SER B 166 OG REMARK 470 HIS B 168 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 169 CA C O CB CG ND1 CD2 REMARK 470 HIS B 169 CE1 NE2 REMARK 470 DG C 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 4 O3' DA C 5 P -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 8 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 6OGJ A 77 166 UNP P51608 MECP2_HUMAN 77 166 DBREF 6OGJ B 77 166 UNP P51608 MECP2_HUMAN 77 166 DBREF 6OGJ D 1 12 PDB 6OGJ 6OGJ 1 12 DBREF 6OGJ C 1 12 PDB 6OGJ 6OGJ 1 12 SEQADV 6OGJ ALA A 167 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS A 168 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS A 169 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS A 170 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS A 171 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS A 172 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS A 173 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS A 174 UNP P51608 EXPRESSION TAG SEQADV 6OGJ ALA B 167 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS B 168 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS B 169 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS B 170 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS B 171 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS B 172 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS B 173 UNP P51608 EXPRESSION TAG SEQADV 6OGJ HIS B 174 UNP P51608 EXPRESSION TAG SEQRES 1 A 98 ALA SER ALA SER PRO LYS GLN ARG ARG SER ILE ILE ARG SEQRES 2 A 98 ASP ARG GLY PRO MET TYR ASP ASP PRO THR LEU PRO GLU SEQRES 3 A 98 GLY TRP THR ARG LYS LEU LYS GLN ARG LYS SER GLY ARG SEQRES 4 A 98 SER ALA GLY LYS TYR ASP VAL TYR LEU ILE ASN PRO GLN SEQRES 5 A 98 GLY LYS ALA PHE ARG SER LYS VAL GLU LEU ILE ALA TYR SEQRES 6 A 98 PHE GLU LYS VAL GLY ASP THR SER LEU ASP PRO ASN ASP SEQRES 7 A 98 PHE ASP PHE THR VAL THR GLY ARG GLY SER PRO SER ALA SEQRES 8 A 98 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 98 ALA SER ALA SER PRO LYS GLN ARG ARG SER ILE ILE ARG SEQRES 2 B 98 ASP ARG GLY PRO MET TYR ASP ASP PRO THR LEU PRO GLU SEQRES 3 B 98 GLY TRP THR ARG LYS LEU LYS GLN ARG LYS SER GLY ARG SEQRES 4 B 98 SER ALA GLY LYS TYR ASP VAL TYR LEU ILE ASN PRO GLN SEQRES 5 B 98 GLY LYS ALA PHE ARG SER LYS VAL GLU LEU ILE ALA TYR SEQRES 6 B 98 PHE GLU LYS VAL GLY ASP THR SER LEU ASP PRO ASN ASP SEQRES 7 B 98 PHE ASP PHE THR VAL THR GLY ARG GLY SER PRO SER ALA SEQRES 8 B 98 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 D 12 DC DG DG DA DG DT DG DT DA DG DG DC SEQRES 1 C 12 DG DC DC DT DA DC DA DC DT DC DC DG HET UNX A 201 1 HET UNX B 201 1 HET UNX B 202 1 HET UNX D 101 1 HET UNX D 102 1 HET UNX D 103 1 HET UNX D 104 1 HET UNX C 101 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 5 UNX 8(X) FORMUL 13 HOH *41(H2 O) HELIX 1 AA1 SER A 134 VAL A 145 1 12 HELIX 2 AA2 ASP A 151 PHE A 155 5 5 HELIX 3 AA3 SER A 164 HIS A 169 1 6 HELIX 4 AA4 SER B 134 VAL B 145 1 12 HELIX 5 AA5 ASP B 151 PHE B 155 5 5 HELIX 6 AA6 SER B 164 HIS B 168 5 5 SHEET 1 AA1 3 THR A 105 GLN A 110 0 SHEET 2 AA1 3 TYR A 120 ILE A 125 -1 O TYR A 123 N LYS A 107 SHEET 3 AA1 3 ALA A 131 PHE A 132 -1 O PHE A 132 N LEU A 124 SHEET 1 AA2 3 THR B 105 GLN B 110 0 SHEET 2 AA2 3 TYR B 120 ILE B 125 -1 O TYR B 123 N LYS B 107 SHEET 3 AA2 3 ALA B 131 PHE B 132 -1 O PHE B 132 N LEU B 124 CRYST1 29.723 90.181 40.524 90.00 92.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033644 0.000000 0.001510 0.00000 SCALE2 0.000000 0.011089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024702 0.00000