HEADER LYASE 04-APR-19 6OH6 TITLE CRYSTAL STRUCTURE OF (E)-BIFORMENE SYNTHASE LRDC FROM STREPTOMYCES SP. TITLE 2 STRAIN K155 IN COMPLEX WITH MG AND PPI COMPND MOL_ID: 1; COMPND 2 MOLECULE: LABDANE-RELATED DITERPENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.3.193; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1931; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS BIOACTIVE NATURAL PRODUCTS, BIFORMENE, DITERPENE SYNTHASE, KEYWDS 2 LABDATRIENE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CENTENO-LEIJA,H.SERRANO-POSADA REVDAT 6 03-APR-24 6OH6 1 REMARK REVDAT 5 13-MAR-24 6OH6 1 LINK REVDAT 4 15-JAN-20 6OH6 1 REMARK REVDAT 3 19-JUN-19 6OH6 1 JRNL REVDAT 2 24-APR-19 6OH6 1 JRNL REVDAT 1 17-APR-19 6OH6 0 SPRSDE 17-APR-19 6OH6 5A0J JRNL AUTH S.CENTENO-LEIJA,S.TAPIA-CABRERA,S.GUZMAN-TRAMPE,B.ESQUIVEL, JRNL AUTH 2 N.ESTURAU-ESCOFET,V.H.TIERRAFRIA,R.RODRIGUEZ-SANOJA, JRNL AUTH 3 A.ZARATE-ROMERO,V.STOJANOFF,E.RUDINO-PINERA,S.SANCHEZ, JRNL AUTH 4 H.SERRANO-POSADA JRNL TITL THE STRUCTURE OF (E)-BIFORMENE SYNTHASE PROVIDES INSIGHTS JRNL TITL 2 INTO THE BIOSYNTHESIS OF BACTERIAL BICYCLIC LABDANE-RELATED JRNL TITL 3 DITERPENOIDS. JRNL REF J.STRUCT.BIOL. V. 207 29 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 30981884 JRNL DOI 10.1016/J.JSB.2019.04.010 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3656 - 4.8656 1.00 2770 170 0.2205 0.2302 REMARK 3 2 4.8656 - 3.8626 1.00 2656 153 0.2064 0.2199 REMARK 3 3 3.8626 - 3.3745 1.00 2652 162 0.2229 0.2489 REMARK 3 4 3.3745 - 3.0660 1.00 2648 140 0.2517 0.2885 REMARK 3 5 3.0660 - 2.8463 1.00 2646 137 0.2524 0.2606 REMARK 3 6 2.8463 - 2.6785 1.00 2633 131 0.2449 0.2753 REMARK 3 7 2.6785 - 2.5444 1.00 2659 118 0.2453 0.3058 REMARK 3 8 2.5444 - 2.4336 1.00 2603 156 0.2520 0.2578 REMARK 3 9 2.4336 - 2.3399 1.00 2613 136 0.2566 0.2779 REMARK 3 10 2.3399 - 2.2592 1.00 2592 155 0.2622 0.3226 REMARK 3 11 2.2592 - 2.1885 1.00 2633 142 0.2820 0.3020 REMARK 3 12 2.1885 - 2.1260 1.00 2622 148 0.2751 0.3179 REMARK 3 13 2.1260 - 2.0700 1.00 2597 119 0.3161 0.3383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : SI-111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 46.354 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.10 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 1.19400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: LOW RESOLUTION SAD STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M MAGNESIUM ACETATE TETRAHYDRATE, REMARK 280 0.08 M SODIUM CACODYLATE TRIHYDRATE PH 6.5, 16% (W/V) PEG 8000, REMARK 280 20% (V/V) GLYCEROL, MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.21400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.60700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.60700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.21400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 ARG A 321 REMARK 465 PRO A 322 REMARK 465 ASN A 323 REMARK 465 ARG A 324 REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 THR A 328 REMARK 465 SER A 329 REMARK 465 SER A 330 REMARK 465 PRO A 331 REMARK 465 ALA A 332 REMARK 465 ARG A 333 REMARK 465 SER A 334 REMARK 465 LEU A 335 REMARK 465 GLN A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 95 O HOH A 501 1.96 REMARK 500 NH2 ARG A 237 O HOH A 502 2.14 REMARK 500 O HOH A 534 O HOH A 615 2.14 REMARK 500 O HOH A 592 O HOH A 614 2.15 REMARK 500 N MET A 10 O HOH A 503 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 11 114.75 66.98 REMARK 500 HIS A 29 34.60 -83.56 REMARK 500 ALA A 71 -132.90 67.92 REMARK 500 ASP A 72 112.78 112.36 REMARK 500 GLU A 95 21.76 44.36 REMARK 500 ASN A 120 101.44 5.05 REMARK 500 GLU A 204 138.57 -171.20 REMARK 500 ARG A 241 -179.06 -63.55 REMARK 500 ARG A 243 170.34 -58.01 REMARK 500 HIS A 288 41.05 -71.07 REMARK 500 ALA A 289 165.59 61.43 REMARK 500 SER A 290 -149.53 153.24 REMARK 500 ALA A 296 -52.78 62.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 90 OD2 REMARK 620 2 GLU A 95 OE2 95.2 REMARK 620 3 PPV A 401 O11 86.3 103.1 REMARK 620 4 HOH A 501 O 80.7 51.4 149.5 REMARK 620 5 HOH A 517 O 74.0 163.5 88.9 113.4 REMARK 620 6 HOH A 526 O 164.2 79.9 109.3 84.6 107.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 PPV A 401 O11 86.8 REMARK 620 3 PPV A 401 O32 169.6 95.8 REMARK 620 4 HOH A 537 O 86.3 100.7 83.3 REMARK 620 5 HOH A 540 O 82.1 160.7 98.0 94.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 230 OD1 REMARK 620 2 SER A 234 OG 109.5 REMARK 620 3 GLU A 238 OE1 168.6 66.4 REMARK 620 4 PPV A 401 O21 90.0 160.0 95.2 REMARK 620 5 PPV A 401 O22 75.6 112.4 95.8 75.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PPV A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 408 DBREF1 6OH6 A 1 342 UNP A0A158RFK9_STRSQ DBREF2 6OH6 A A0A158RFK9 1 342 SEQRES 1 A 342 MET THR ASP THR ASP ASP GLY GLY THR MET LEU PRO LEU SEQRES 2 A 342 PRO ASP PHE THR ALA THR PHE PRO GLU PRO PHE PRO ALA SEQRES 3 A 342 GLY PRO HIS SER GLU ARG THR GLU HIS ARG LEU LEU ASP SEQRES 4 A 342 TRP LEU GLU GLU HIS PRO LEU LEU PRO SER ALA LYS ALA SEQRES 5 A 342 LYS ALA VAL LEU VAL ASN ILE THR SER HIS GLY ALA SER SEQRES 6 A 342 ARG THR PHE PRO THR ALA ASP ALA ASP ASP LEU LEU LEU SEQRES 7 A 342 PHE ALA GLU LEU LEU LEU TRP LEU THR ALA PHE ASP ASP SEQRES 8 A 342 VAL HIS ALA GLU GLY ASN GLY VAL GLY GLY PRO ALA ALA SEQRES 9 A 342 LEU VAL ASP ARG ALA SER GLU LEU MET LEU VAL LEU ALA SEQRES 10 A 342 GLY GLY ASN PRO PRO ARG ALA MET SER PRO PHE PRO ALA SEQRES 11 A 342 VAL LEU HIS ASP LEU LEU ALA ARG PHE ARG ALA ARG ALA SEQRES 12 A 342 SER ALA ALA ALA TYR HIS ARG LEU ALA ALA SER LEU ARG SEQRES 13 A 342 ASP THR LEU MET ALA LEU VAL TRP GLU ALA HIS HIS VAL SEQRES 14 A 342 ALA LYS PRO GLU GLY VAL ALA LEU ALA THR TYR LEU ALA SEQRES 15 A 342 MET ARG PRO HIS THR VAL PHE ILE LYS THR ILE THR ALA SEQRES 16 A 342 ALA GLY GLU ILE LEU LEU GLY TYR GLU LEU THR ASP THR SEQRES 17 A 342 GLN ARG ALA LEU ALA ALA VAL ARG ASN LEU GLU THR ALA SEQRES 18 A 342 VAL ALA ASN LEU ALA GLY TRP ILE ASN ASP LEU ALA SER SEQRES 19 A 342 TYR GLU ARG GLU MET GLN ARG GLY ARG GLY GLN PRO LEU SEQRES 20 A 342 SER LEU PRO THR LEU LEU HIS ALA ARG HIS GLY GLY THR SEQRES 21 A 342 ILE GLU GLU ALA PHE THR ARG ALA SER SER MET CYS GLU SEQRES 22 A 342 ASN GLU ALA ALA VAL ALA ARG ARG GLY ILE THR HIS LEU SEQRES 23 A 342 ALA HIS ALA SER PRO ASN ALA LEU THR ALA HIS ALA ARG SEQRES 24 A 342 ALA LEU GLU ASP ILE THR ARG SER PHE ILE TRP HIS THR SEQRES 25 A 342 SER HIS ALA ARG TYR GLN GLY ILE ARG PRO ASN ARG GLY SEQRES 26 A 342 SER SER THR SER SER PRO ALA ARG SER LEU GLN HIS HIS SEQRES 27 A 342 HIS HIS HIS HIS HET PPV A 401 9 HET MG A 402 1 HET MG A 403 1 HET MG A 404 1 HET GOL A 405 6 HET PEG A 406 7 HET PEG A 407 7 HET PEG A 408 7 HETNAM PPV PYROPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PPV H4 O7 P2 FORMUL 3 MG 3(MG 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 7 PEG 3(C4 H10 O3) FORMUL 10 HOH *138(H2 O) HELIX 1 AA1 HIS A 29 HIS A 44 1 16 HELIX 2 AA2 SER A 49 PHE A 68 1 20 HELIX 3 AA3 ASP A 72 ALA A 94 1 23 HELIX 4 AA4 GLY A 100 GLY A 118 1 19 HELIX 5 AA5 PRO A 127 ALA A 143 1 17 HELIX 6 AA6 SER A 144 VAL A 169 1 26 HELIX 7 AA7 LYS A 171 VAL A 175 5 5 HELIX 8 AA8 ALA A 176 VAL A 188 1 13 HELIX 9 AA9 PHE A 189 LEU A 201 1 13 HELIX 10 AB1 THR A 206 LEU A 212 1 7 HELIX 11 AB2 LEU A 212 ARG A 241 1 30 HELIX 12 AB3 SER A 248 GLY A 258 1 11 HELIX 13 AB4 THR A 260 HIS A 288 1 29 HELIX 14 AB5 ALA A 293 THR A 312 1 20 HELIX 15 AB6 HIS A 314 GLY A 319 1 6 LINK OD2 ASP A 90 MG MG A 404 1555 1555 2.04 LINK OE1 GLU A 95 MG MG A 403 1555 1555 2.03 LINK OE2 GLU A 95 MG MG A 404 1555 1555 2.09 LINK OD1 ASN A 230 MG MG A 402 1555 1555 2.06 LINK OG SER A 234 MG MG A 402 1555 1555 2.08 LINK OE1 GLU A 238 MG MG A 402 1555 1555 2.03 LINK O21 PPV A 401 MG MG A 402 1555 1555 2.03 LINK O22 PPV A 401 MG MG A 402 1555 1555 2.10 LINK O11 PPV A 401 MG MG A 403 1555 1555 2.04 LINK O32 PPV A 401 MG MG A 403 1555 1555 2.04 LINK O11 PPV A 401 MG MG A 404 1555 1555 2.25 LINK MG MG A 403 O HOH A 537 1555 1555 1.95 LINK MG MG A 403 O HOH A 540 1555 1555 2.06 LINK MG MG A 404 O HOH A 501 1555 1555 2.38 LINK MG MG A 404 O HOH A 517 1555 1555 2.09 LINK MG MG A 404 O HOH A 526 1555 1555 1.86 CISPEP 1 GLU A 22 PRO A 23 0 -7.01 SITE 1 AC1 17 ASP A 90 GLU A 95 ARG A 184 ASN A 230 SITE 2 AC1 17 SER A 234 ARG A 237 GLU A 238 ARG A 316 SITE 3 AC1 17 TYR A 317 MG A 402 MG A 403 MG A 404 SITE 4 AC1 17 HOH A 517 HOH A 532 HOH A 537 HOH A 540 SITE 5 AC1 17 HOH A 561 SITE 1 AC2 4 ASN A 230 SER A 234 GLU A 238 PPV A 401 SITE 1 AC3 5 GLU A 95 PPV A 401 MG A 404 HOH A 537 SITE 2 AC3 5 HOH A 540 SITE 1 AC4 7 ASP A 90 GLU A 95 PPV A 401 MG A 403 SITE 2 AC4 7 HOH A 501 HOH A 517 HOH A 526 SITE 1 AC5 5 VAL A 115 HIS A 133 ARG A 140 TYR A 148 SITE 2 AC5 5 HOH A 508 SITE 1 AC6 6 LEU A 116 ALA A 117 HIS A 149 ALA A 152 SITE 2 AC6 6 ARG A 156 HOH A 541 SITE 1 AC7 6 LEU A 181 PRO A 185 LYS A 191 ASN A 224 SITE 2 AC7 6 HOH A 530 HOH A 590 SITE 1 AC8 4 THR A 19 PRO A 21 ARG A 280 ARG A 306 CRYST1 107.050 107.050 88.821 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009341 0.005393 0.000000 0.00000 SCALE2 0.000000 0.010787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011259 0.00000