HEADER HYDROLASE 05-APR-19 6OH9 TITLE YEAST GUANINE DEAMINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: YEAST GUANINE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE AMINASE,GUANINE AMINOHYDROLASE,GAH; COMPND 5 EC: 3.5.4.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: GUD1, YDL238C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMIDOHYDROLASE GUANINE DEAMINASE PURINE METABOLISM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.S.SHEK,J.B.FRENCH REVDAT 4 11-OCT-23 6OH9 1 REMARK REVDAT 3 01-JAN-20 6OH9 1 REMARK REVDAT 2 14-AUG-19 6OH9 1 JRNL REVDAT 1 24-JUL-19 6OH9 0 JRNL AUTH R.SHEK,T.HILAIRE,J.SIM,J.B.FRENCH JRNL TITL STRUCTURAL DETERMINANTS FOR SUBSTRATE SELECTIVITY IN GUANINE JRNL TITL 2 DEAMINASE ENZYMES OF THE AMIDOHYDROLASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 58 3280 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31283204 JRNL DOI 10.1021/ACS.BIOCHEM.9B00341 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 67865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9700 - 5.1200 0.99 2770 165 0.1784 0.1667 REMARK 3 2 5.1200 - 4.0600 1.00 2679 136 0.1163 0.1126 REMARK 3 3 4.0600 - 3.5500 1.00 2636 146 0.1292 0.1401 REMARK 3 4 3.5500 - 3.2200 1.00 2609 134 0.1404 0.1430 REMARK 3 5 3.2200 - 2.9900 1.00 2597 149 0.1438 0.1464 REMARK 3 6 2.9900 - 2.8200 1.00 2569 159 0.1394 0.1676 REMARK 3 7 2.8200 - 2.6700 1.00 2574 139 0.1388 0.1617 REMARK 3 8 2.6700 - 2.5600 1.00 2557 164 0.1322 0.1448 REMARK 3 9 2.5600 - 2.4600 1.00 2538 166 0.1234 0.1593 REMARK 3 10 2.4600 - 2.3800 1.00 2596 113 0.1210 0.1398 REMARK 3 11 2.3800 - 2.3000 1.00 2565 141 0.1231 0.1384 REMARK 3 12 2.3000 - 2.2400 1.00 2572 119 0.1274 0.1436 REMARK 3 13 2.2400 - 2.1800 1.00 2578 125 0.1275 0.1535 REMARK 3 14 2.1800 - 2.1200 1.00 2548 138 0.1300 0.1705 REMARK 3 15 2.1200 - 2.0700 1.00 2568 139 0.1333 0.1913 REMARK 3 16 2.0700 - 2.0300 1.00 2524 151 0.1449 0.1560 REMARK 3 17 2.0300 - 1.9900 1.00 2531 148 0.1433 0.1820 REMARK 3 18 1.9900 - 1.9500 1.00 2559 136 0.1534 0.1780 REMARK 3 19 1.9500 - 1.9200 1.00 2517 145 0.1606 0.2072 REMARK 3 20 1.9200 - 1.8900 1.00 2549 141 0.1612 0.1822 REMARK 3 21 1.8900 - 1.8500 1.00 2579 101 0.1650 0.2009 REMARK 3 22 1.8500 - 1.8300 1.00 2534 126 0.1790 0.1958 REMARK 3 23 1.8300 - 1.8000 1.00 2579 118 0.1835 0.2137 REMARK 3 24 1.8000 - 1.7700 1.00 2556 113 0.1954 0.2204 REMARK 3 25 1.7700 - 1.7500 1.00 2541 128 0.2290 0.2254 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.124 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.614 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3718 REMARK 3 ANGLE : 1.101 5040 REMARK 3 CHIRALITY : 0.058 576 REMARK 3 PLANARITY : 0.007 637 REMARK 3 DIHEDRAL : 4.554 3011 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 79) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1040 8.8887 22.5959 REMARK 3 T TENSOR REMARK 3 T11: 0.1256 T22: 0.5078 REMARK 3 T33: 0.2226 T12: -0.0297 REMARK 3 T13: -0.0041 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 1.0771 L22: 0.2212 REMARK 3 L33: 0.0251 L12: -0.1040 REMARK 3 L13: 0.1394 L23: 0.0238 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.1873 S13: 0.1114 REMARK 3 S21: 0.0229 S22: 0.0082 S23: -0.1612 REMARK 3 S31: -0.0079 S32: 0.4837 S33: -0.0186 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7004 15.4392 -0.8695 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.2147 REMARK 3 T33: 0.1486 T12: -0.0262 REMARK 3 T13: 0.0174 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.5436 L22: 0.4606 REMARK 3 L33: 0.6224 L12: -0.2479 REMARK 3 L13: 0.1811 L23: -0.0716 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: 0.0997 S13: 0.0424 REMARK 3 S21: -0.0447 S22: -0.0267 S23: -0.0404 REMARK 3 S31: -0.1089 S32: 0.1895 S33: 0.0256 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8106 4.9811 4.8001 REMARK 3 T TENSOR REMARK 3 T11: 0.0819 T22: 0.1713 REMARK 3 T33: 0.1368 T12: 0.0077 REMARK 3 T13: 0.0021 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.5425 L22: 0.2980 REMARK 3 L33: 0.7062 L12: -0.0639 REMARK 3 L13: 0.0912 L23: -0.0234 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: 0.1055 S13: -0.0104 REMARK 3 S21: -0.0142 S22: -0.0077 S23: -0.0321 REMARK 3 S31: 0.0316 S32: 0.2181 S33: -0.0284 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OH9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67865 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 53.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OOD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350 100 MM HEPES, PH 7.5 0.2 REMARK 280 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.41550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.12325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.70775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.41550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.70775 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.12325 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 28.70775 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 956 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 10 REMARK 465 PHE A 11 REMARK 465 ASN A 12 REMARK 465 ILE A 81 REMARK 465 GLY A 82 REMARK 465 LYS A 83 REMARK 465 ASP A 84 REMARK 465 LYS A 85 REMARK 465 THR A 86 REMARK 465 ARG A 87 REMARK 465 GLU A 436 REMARK 465 LYS A 437 REMARK 465 ASP A 438 REMARK 465 GLN A 439 REMARK 465 MET A 440 REMARK 465 GLN A 441 REMARK 465 GLU A 442 REMARK 465 GLN A 443 REMARK 465 GLU A 444 REMARK 465 GLN A 445 REMARK 465 GLU A 446 REMARK 465 GLN A 447 REMARK 465 GLY A 448 REMARK 465 GLN A 449 REMARK 465 ASP A 450 REMARK 465 PRO A 451 REMARK 465 TYR A 452 REMARK 465 LYS A 453 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 14 CE NZ REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 30 CE NZ REMARK 470 ILE A 80 CG1 CG2 CD1 REMARK 470 ASN A 88 CG OD1 ND2 REMARK 470 ASN A 89 CG OD1 ND2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 LYS A 249 CE NZ REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 ARG A 307 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 311 CD OE1 NE2 REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 ASN A 454 CG OD1 ND2 REMARK 470 GLN A 484 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 392 CG - SD - CE ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 88.88 -153.86 REMARK 500 HIS A 100 109.90 -164.91 REMARK 500 PHE A 112 -12.03 -163.84 REMARK 500 ASN A 161 -110.63 -102.70 REMARK 500 TYR A 197 72.12 -151.33 REMARK 500 HIS A 297 -73.29 88.18 REMARK 500 THR A 376 163.26 74.84 REMARK 500 THR A 391 -86.28 -125.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 507 REMARK 610 2PE A 508 REMARK 610 2PE A 509 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HIS A 102 NE2 96.8 REMARK 620 3 HIS A 258 NE2 87.7 110.5 REMARK 620 4 ASP A 348 OD1 87.0 99.0 150.5 REMARK 620 5 HOH A 889 O 167.5 91.8 97.8 82.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2PE A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2PE A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2PE A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2PE A 509 DBREF 6OH9 A 1 489 UNP Q07729 GUAD_YEAST 1 489 SEQRES 1 A 489 MET THR LYS SER ASP LEU LEU PHE ASP LYS PHE ASN ASP SEQRES 2 A 489 LYS HIS GLY LYS PHE LEU VAL PHE PHE GLY THR PHE VAL SEQRES 3 A 489 ASP THR PRO LYS LEU GLY GLU LEU ARG ILE ARG GLU LYS SEQRES 4 A 489 THR SER VAL GLY VAL LEU ASN GLY ILE ILE ARG PHE VAL SEQRES 5 A 489 ASN ARG ASN SER LEU ASP PRO VAL LYS ASP CYS LEU ASP SEQRES 6 A 489 HIS ASP SER SER LEU SER PRO GLU ASP VAL THR VAL VAL SEQRES 7 A 489 ASP ILE ILE GLY LYS ASP LYS THR ARG ASN ASN SER PHE SEQRES 8 A 489 TYR PHE PRO GLY PHE VAL ASP THR HIS ASN HIS VAL SER SEQRES 9 A 489 GLN TYR PRO ASN VAL GLY VAL PHE GLY ASN SER THR LEU SEQRES 10 A 489 LEU ASP TRP LEU GLU LYS TYR THR PHE PRO ILE GLU ALA SEQRES 11 A 489 ALA LEU ALA ASN GLU ASN ILE ALA ARG GLU VAL TYR ASN SEQRES 12 A 489 LYS VAL ILE SER LYS THR LEU SER HIS GLY THR THR THR SEQRES 13 A 489 VAL ALA TYR TYR ASN THR ILE ASP LEU LYS SER THR LYS SEQRES 14 A 489 LEU LEU ALA GLN LEU SER SER LEU LEU GLY GLN ARG VAL SEQRES 15 A 489 LEU VAL GLY LYS VAL CYS MET ASP THR ASN GLY PRO GLU SEQRES 16 A 489 TYR TYR ILE GLU ASP THR LYS THR SER PHE GLU SER THR SEQRES 17 A 489 VAL LYS VAL VAL LYS TYR ILE ARG GLU THR ILE CYS ASP SEQRES 18 A 489 PRO LEU VAL ASN PRO ILE VAL THR PRO ARG PHE ALA PRO SEQRES 19 A 489 SER CYS SER ARG GLU LEU MET GLN GLN LEU SER LYS LEU SEQRES 20 A 489 VAL LYS ASP GLU ASN ILE HIS VAL GLN THR HIS LEU SER SEQRES 21 A 489 GLU ASN LYS GLU GLU ILE GLN TRP VAL GLN ASP LEU PHE SEQRES 22 A 489 PRO GLU CYS GLU SER TYR THR ASP VAL TYR ASP LYS TYR SEQRES 23 A 489 GLY LEU LEU THR GLU LYS THR VAL LEU ALA HIS CYS ILE SEQRES 24 A 489 HIS LEU THR ASP ALA GLU ALA ARG VAL ILE LYS GLN ARG SEQRES 25 A 489 ARG CYS GLY ILE SER HIS CYS PRO ILE SER ASN SER SER SEQRES 26 A 489 LEU THR SER GLY GLU CYS ARG VAL ARG TRP LEU LEU ASP SEQRES 27 A 489 GLN GLY ILE LYS VAL GLY LEU GLY THR ASP VAL SER ALA SEQRES 28 A 489 GLY HIS SER CYS SER ILE LEU THR THR GLY ARG GLN ALA SEQRES 29 A 489 PHE ALA VAL SER ARG HIS LEU ALA MET ARG GLU THR ASP SEQRES 30 A 489 HIS ALA LYS LEU SER VAL SER GLU CYS LEU PHE LEU ALA SEQRES 31 A 489 THR MET GLY GLY ALA GLN VAL LEU ARG MET ASP GLU THR SEQRES 32 A 489 LEU GLY THR PHE ASP VAL GLY LYS GLN PHE ASP ALA GLN SEQRES 33 A 489 MET ILE ASP THR ASN ALA PRO GLY SER ASN VAL ASP MET SEQRES 34 A 489 PHE HIS TRP GLN LEU LYS GLU LYS ASP GLN MET GLN GLU SEQRES 35 A 489 GLN GLU GLN GLU GLN GLY GLN ASP PRO TYR LYS ASN PRO SEQRES 36 A 489 PRO LEU LEU THR ASN GLU ASP ILE ILE ALA LYS TRP PHE SEQRES 37 A 489 PHE ASN GLY ASP ASP ARG ASN THR THR LYS VAL TRP VAL SEQRES 38 A 489 ALA GLY GLN GLN VAL TYR GLN ILE HET ZN A 501 1 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET 2PE A 506 65 HET 2PE A 507 36 HET 2PE A 508 10 HET 2PE A 509 16 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM 2PE NONAETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 2PE 4(C18 H38 O10) FORMUL 11 HOH *436(H2 O) HELIX 1 AA1 ASP A 58 ASP A 67 1 10 HELIX 2 AA2 SER A 71 GLU A 73 5 3 HELIX 3 AA3 SER A 104 VAL A 109 5 6 HELIX 4 AA4 THR A 116 TYR A 124 1 9 HELIX 5 AA5 TYR A 124 LEU A 132 1 9 HELIX 6 AA6 ASN A 134 HIS A 152 1 19 HELIX 7 AA7 ASP A 164 GLY A 179 1 16 HELIX 8 AA8 ASP A 200 THR A 218 1 19 HELIX 9 AA9 PHE A 232 CYS A 236 5 5 HELIX 10 AB1 SER A 237 ASN A 252 1 16 HELIX 11 AB2 ASN A 262 PHE A 273 1 12 HELIX 12 AB3 SER A 278 TYR A 286 1 9 HELIX 13 AB4 THR A 302 ARG A 313 1 12 HELIX 14 AB5 CYS A 319 LEU A 326 1 8 HELIX 15 AB6 ARG A 332 GLN A 339 1 8 HELIX 16 AB7 SER A 356 THR A 376 1 21 HELIX 17 AB8 ASP A 377 LYS A 380 5 4 HELIX 18 AB9 SER A 382 THR A 391 1 10 HELIX 19 AC1 THR A 391 LEU A 398 1 8 HELIX 20 AC2 PHE A 430 LEU A 434 5 5 HELIX 21 AC3 THR A 459 GLY A 471 1 13 HELIX 22 AC4 ASP A 472 ARG A 474 5 3 SHEET 1 AA1 4 ILE A 48 ASN A 53 0 SHEET 2 AA1 4 ARG A 35 LEU A 45 -1 N GLY A 43 O ARG A 50 SHEET 3 AA1 4 PHE A 18 ASP A 27 -1 N LEU A 19 O VAL A 44 SHEET 4 AA1 4 VAL A 75 ASP A 79 1 O VAL A 78 N VAL A 20 SHEET 1 AA2 4 SER A 90 PRO A 94 0 SHEET 2 AA2 4 ALA A 415 ASP A 419 -1 O ILE A 418 N PHE A 91 SHEET 3 AA2 4 THR A 476 VAL A 481 -1 O TRP A 480 N ALA A 415 SHEET 4 AA2 4 GLN A 484 GLN A 488 -1 O GLN A 484 N VAL A 481 SHEET 1 AA3 5 PHE A 96 HIS A 102 0 SHEET 2 AA3 5 THR A 154 TYR A 160 1 O THR A 156 N ASP A 98 SHEET 3 AA3 5 ARG A 181 GLY A 185 1 O LEU A 183 N TYR A 159 SHEET 4 AA3 5 VAL A 224 PRO A 230 1 O ASN A 225 N VAL A 182 SHEET 5 AA3 5 VAL A 187 CYS A 188 1 N CYS A 188 O THR A 229 SHEET 1 AA4 8 PHE A 96 HIS A 102 0 SHEET 2 AA4 8 THR A 154 TYR A 160 1 O THR A 156 N ASP A 98 SHEET 3 AA4 8 ARG A 181 GLY A 185 1 O LEU A 183 N TYR A 159 SHEET 4 AA4 8 VAL A 224 PRO A 230 1 O ASN A 225 N VAL A 182 SHEET 5 AA4 8 HIS A 254 LEU A 259 1 O HIS A 254 N VAL A 228 SHEET 6 AA4 8 THR A 293 HIS A 297 1 O VAL A 294 N VAL A 255 SHEET 7 AA4 8 GLY A 315 HIS A 318 1 O GLY A 315 N LEU A 295 SHEET 8 AA4 8 LYS A 342 LEU A 345 1 O GLY A 344 N HIS A 318 LINK NE2 HIS A 100 ZN ZN A 501 1555 1555 2.10 LINK NE2 HIS A 102 ZN ZN A 501 1555 1555 2.09 LINK NE2 HIS A 258 ZN ZN A 501 1555 1555 2.11 LINK OD1 ASP A 348 ZN ZN A 501 1555 1555 2.18 LINK ZN ZN A 501 O HOH A 889 1555 1555 2.25 CISPEP 1 VAL A 349 SER A 350 0 -3.69 SITE 1 AC1 5 HIS A 100 HIS A 102 HIS A 258 ASP A 348 SITE 2 AC1 5 HOH A 889 SITE 1 AC2 7 GLY A 113 ASN A 114 HOH A 631 HOH A 776 SITE 2 AC2 7 HOH A 791 HOH A 793 HOH A 934 SITE 1 AC3 1 GLY A 424 SITE 1 AC4 4 THR A 359 ARG A 362 HOH A 656 HOH A 898 SITE 1 AC5 2 LYS A 478 HOH A 710 SITE 1 AC6 11 LEU A 118 ASP A 119 GLU A 122 ASN A 192 SITE 2 AC6 11 ASP A 303 ARG A 374 GLU A 375 HOH A 632 SITE 3 AC6 11 HOH A 659 HOH A 788 HOH A 970 SITE 1 AC7 5 ILE A 48 GLU A 402 VAL A 409 GLY A 410 SITE 2 AC7 5 HOH A 927 SITE 1 AC8 1 GLU A 275 SITE 1 AC9 4 VAL A 486 TYR A 487 GLN A 488 HOH A 973 CRYST1 107.229 107.229 114.831 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009326 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008708 0.00000