HEADER LIGASE 09-APR-19 6OI8 TITLE CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE BIOTIN CARBOXYLASE TITLE 2 COMPLEXED WITH 7-((1R,5S,6S)-6-AMINO-3-AZABICYCLO[3.1.0]HEXAN-3-YL)- TITLE 3 6-(2-CHLORO-6-(PYRIDIN-3-YL)PHENYL)PYRIDO[2,3-D]PYRIMIDIN-2-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A,ACC; COMPND 5 EC: 6.3.4.14,6.4.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM SOURCE 3 11121 / KW20 / RD); SOURCE 4 ORGANISM_TAXID: 71421; SOURCE 5 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 6 GENE: ACCC, HI_0972; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP GRASP, CARBOXYLASE, INHIBITOR, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.D.ANDREWS,T.R.KANE,P.DOZZO,C.M.HAGLUND,D.J.HILDERBRANDT, AUTHOR 2 M.S.LINSELL,T.MACHAJEWSKI,G.MCENROE,A.W.SERIO,K.B.WLASICHUK, AUTHOR 3 D.B.NEAU,S.PAKHOMOVA,G.L.WALDROP,M.SHARP,J.POGLIANO,R.CIRZ,F.COHEN REVDAT 4 11-OCT-23 6OI8 1 REMARK REVDAT 3 18-DEC-19 6OI8 1 REMARK REVDAT 2 04-SEP-19 6OI8 1 JRNL REVDAT 1 31-JUL-19 6OI8 0 JRNL AUTH L.D.ANDREWS,T.R.KANE,P.DOZZO,C.M.HAGLUND,D.J.HILDERBRANDT, JRNL AUTH 2 M.S.LINSELL,T.MACHAJEWSKI,G.MCENROE,A.W.SERIO,K.B.WLASICHUK, JRNL AUTH 3 D.B.NEAU,S.PAKHOMOVA,G.L.WALDROP,M.SHARP,J.POGLIANO, JRNL AUTH 4 R.T.CIRZ,F.COHEN JRNL TITL OPTIMIZATION AND MECHANISTIC CHARACTERIZATION OF JRNL TITL 2 PYRIDOPYRIMIDINE INHIBITORS OF BACTERIAL BIOTIN CARBOXYLASE. JRNL REF J.MED.CHEM. V. 62 7489 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31306011 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00625 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 13626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 701 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -2.41000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.121 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3479 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3305 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4705 ; 1.388 ; 1.660 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7666 ; 1.160 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 6.866 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;35.778 ;22.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;17.795 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.252 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 467 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3891 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 691 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1758 ; 1.105 ; 3.682 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1756 ; 1.105 ; 3.681 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2194 ; 1.865 ; 5.520 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2194 ; 1.865 ; 5.520 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1721 ; 1.081 ; 3.826 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1722 ; 1.081 ; 3.827 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2509 ; 1.809 ; 5.679 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3725 ; 3.235 ;43.187 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3726 ; 3.235 ;43.187 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5288 90.0740 -3.5732 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.0292 REMARK 3 T33: 0.2139 T12: -0.0249 REMARK 3 T13: -0.0620 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 4.1085 L22: 2.0568 REMARK 3 L33: 1.9158 L12: -1.0989 REMARK 3 L13: 0.0503 L23: 0.1952 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.1995 S13: -0.8116 REMARK 3 S21: 0.0628 S22: 0.1250 S23: 0.3159 REMARK 3 S31: 0.2582 S32: -0.1596 S33: -0.1161 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): 46.1107 106.1705 -0.8003 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.1124 REMARK 3 T33: 0.0939 T12: 0.0347 REMARK 3 T13: 0.0109 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 2.6938 L22: 1.8493 REMARK 3 L33: 2.3141 L12: -0.2472 REMARK 3 L13: 0.3660 L23: -0.7150 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: -0.2691 S13: 0.0529 REMARK 3 S21: 0.1337 S22: 0.2128 S23: 0.3436 REMARK 3 S31: -0.0738 S32: -0.4094 S33: -0.1373 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6OI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RZQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M NA ACETATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.25000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.50000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.25000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 630 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 GLY A 166 REMARK 465 ARG A 167 REMARK 465 MET A 446 REMARK 465 ASN A 447 REMARK 465 GLU A 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 PHE A 193 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 194 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -159.01 -165.40 REMARK 500 SER A 59 -86.70 -136.90 REMARK 500 PHE A 84 -120.35 45.52 REMARK 500 ASP A 141 99.43 -60.18 REMARK 500 LEU A 178 -65.61 -105.84 REMARK 500 ALA A 192 -88.66 -85.11 REMARK 500 ASN A 194 -15.99 75.67 REMARK 500 LEU A 225 67.67 -116.65 REMARK 500 ALA A 226 -149.71 45.53 REMARK 500 ASP A 255 -72.03 -63.33 REMARK 500 THR A 291 51.63 -96.05 REMARK 500 TYR A 381 -144.69 -130.34 REMARK 500 LEU A 444 25.35 -76.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MQV A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RZQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ADP AND METHYL (3AS,4S,6AR)-4-(5- REMARK 900 METHOXY-5-OXOPENTYL)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOLE-1- REMARK 900 CARBOXYLATE REMARK 900 RELATED ID: 4MV1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ADP AND PROSPHATE REMARK 900 RELATED ID: 4MV3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH AMPPCP AND BICARBONATE REMARK 900 RELATED ID: 4MV4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH AMPPCP AND MG2 REMARK 900 RELATED ID: 4MV6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHONOACETAMIDE REMARK 900 RELATED ID: 4MV7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHONOFORMATE REMARK 900 RELATED ID: 4MV8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH AMPPCP AND PHOSPATE REMARK 900 RELATED ID: 4MV9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH BICARBONATE DBREF 6OI8 A 1 448 UNP P43873 ACCC_HAEIN 1 448 SEQADV 6OI8 MET A -19 UNP P43873 INITIATING METHIONINE SEQADV 6OI8 GLY A -18 UNP P43873 EXPRESSION TAG SEQADV 6OI8 SER A -17 UNP P43873 EXPRESSION TAG SEQADV 6OI8 SER A -16 UNP P43873 EXPRESSION TAG SEQADV 6OI8 HIS A -15 UNP P43873 EXPRESSION TAG SEQADV 6OI8 HIS A -14 UNP P43873 EXPRESSION TAG SEQADV 6OI8 HIS A -13 UNP P43873 EXPRESSION TAG SEQADV 6OI8 HIS A -12 UNP P43873 EXPRESSION TAG SEQADV 6OI8 HIS A -11 UNP P43873 EXPRESSION TAG SEQADV 6OI8 HIS A -10 UNP P43873 EXPRESSION TAG SEQADV 6OI8 SER A -9 UNP P43873 EXPRESSION TAG SEQADV 6OI8 SER A -8 UNP P43873 EXPRESSION TAG SEQADV 6OI8 GLY A -7 UNP P43873 EXPRESSION TAG SEQADV 6OI8 LEU A -6 UNP P43873 EXPRESSION TAG SEQADV 6OI8 VAL A -5 UNP P43873 EXPRESSION TAG SEQADV 6OI8 PRO A -4 UNP P43873 EXPRESSION TAG SEQADV 6OI8 ARG A -3 UNP P43873 EXPRESSION TAG SEQADV 6OI8 GLY A -2 UNP P43873 EXPRESSION TAG SEQADV 6OI8 SER A -1 UNP P43873 EXPRESSION TAG SEQADV 6OI8 HIS A 0 UNP P43873 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 468 LEU VAL PRO ARG GLY SER HIS MET LEU GLU LYS VAL VAL SEQRES 3 A 468 ILE ALA ASN ARG GLY GLU ILE ALA LEU ARG ILE LEU ARG SEQRES 4 A 468 ALA CYS LYS GLU LEU GLY ILE LYS THR VAL ALA VAL HIS SEQRES 5 A 468 SER THR ALA ASP ARG ASP LEU LYS HIS VAL LEU LEU ALA SEQRES 6 A 468 ASP GLU THR ILE CYS ILE GLY PRO ALA PRO SER ALA LYS SEQRES 7 A 468 SER TYR LEU ASN ILE PRO ALA ILE ILE ALA ALA ALA GLU SEQRES 8 A 468 VAL THR GLY ALA ASP ALA ILE HIS PRO GLY TYR GLY PHE SEQRES 9 A 468 LEU SER GLU ASN ALA ASP PHE ALA GLU GLN VAL GLU ARG SEQRES 10 A 468 SER GLY PHE THR PHE ILE GLY PRO THR ALA ASP VAL ILE SEQRES 11 A 468 ARG LEU MET GLY ASP LYS VAL SER ALA ILE LYS ALA MET SEQRES 12 A 468 LYS LYS ALA GLY VAL PRO CYS VAL PRO GLY SER ASP GLY SEQRES 13 A 468 PRO VAL SER ASN ASP ILE ALA LYS ASN LYS GLU ILE ALA SEQRES 14 A 468 LYS ARG ILE GLY TYR PRO ILE ILE ILE LYS ALA SER GLY SEQRES 15 A 468 GLY GLY GLY GLY ARG GLY MET ARG VAL VAL ARG SER GLU SEQRES 16 A 468 ASP ALA LEU GLU GLU SER ILE ALA MET THR LYS ALA GLU SEQRES 17 A 468 ALA LYS ALA ALA PHE ASN ASN ASP MET VAL TYR MET GLU SEQRES 18 A 468 LYS TYR LEU GLU ASN PRO ARG HIS VAL GLU ILE GLN VAL SEQRES 19 A 468 LEU ALA ASP THR HIS GLY ASN ALA VAL TYR LEU ALA GLU SEQRES 20 A 468 ARG ASP CYS SER MET GLN ARG ARG HIS GLN LYS VAL VAL SEQRES 21 A 468 GLU GLU ALA PRO ALA PRO GLY ILE THR GLU GLU VAL ARG SEQRES 22 A 468 ARG ASP ILE GLY SER ARG CYS ALA ASN ALA CYS VAL GLU SEQRES 23 A 468 ILE GLY TYR ARG GLY ALA GLY THR PHE GLU PHE LEU TYR SEQRES 24 A 468 GLU ASN GLY GLU PHE TYR PHE ILE GLU MET ASN THR ARG SEQRES 25 A 468 ILE GLN VAL GLU HIS PRO VAL THR GLU MET ILE THR GLY SEQRES 26 A 468 VAL ASP LEU VAL LYS GLU GLN LEU ARG ILE ALA ALA GLY SEQRES 27 A 468 LEU PRO ILE SER PHE LYS GLN GLU ASP ILE LYS VAL LYS SEQRES 28 A 468 GLY HIS ALA MET GLU CYS ARG ILE ASN ALA GLU ASP PRO SEQRES 29 A 468 LYS THR PHE LEU PRO SER PRO GLY LYS VAL ASN HIS LEU SEQRES 30 A 468 HIS SER PRO GLY GLY LEU GLY VAL ARG TRP ASP SER HIS SEQRES 31 A 468 VAL TYR GLY GLY TYR THR VAL PRO PRO HIS TYR ASP SER SEQRES 32 A 468 MET ILE ALA LYS LEU ILE THR TYR GLY ASP THR ARG GLU SEQRES 33 A 468 VAL ALA ILE ARG ARG MET GLN ASN ALA LEU SER GLU THR SEQRES 34 A 468 ILE ILE ASP GLY ILE LYS THR ASN ILE PRO LEU HIS GLU SEQRES 35 A 468 LEU ILE LEU GLU ASP GLU ASN PHE GLN LYS GLY GLY THR SEQRES 36 A 468 ASN ILE HIS TYR LEU GLU LYS LYS LEU GLY MET ASN GLU HET EDO A 501 4 HET MQV A 502 31 HETNAM EDO 1,2-ETHANEDIOL HETNAM MQV 7-[(1R,5S,6S)-6-AMINO-3-AZABICYCLO[3.1.0]HEXAN-3-YL]-6- HETNAM 2 MQV [2-CHLORO-6-(PYRIDIN-3-YL)PHENYL]PYRIDO[2,3- HETNAM 3 MQV D]PYRIMIDIN-2-AMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 MQV C23 H20 CL N7 FORMUL 4 HOH *30(H2 O) HELIX 1 AA1 ARG A 10 LEU A 24 1 15 HELIX 2 AA2 ALA A 35 ARG A 37 5 3 HELIX 3 AA3 LEU A 39 ALA A 45 1 7 HELIX 4 AA4 PRO A 55 SER A 59 5 5 HELIX 5 AA5 ASN A 62 GLY A 74 1 13 HELIX 6 AA6 ASN A 88 SER A 98 1 11 HELIX 7 AA7 THR A 106 ASP A 115 1 10 HELIX 8 AA8 ASP A 115 ALA A 126 1 12 HELIX 9 AA9 ASP A 141 GLY A 153 1 13 HELIX 10 AB1 SER A 174 ALA A 177 5 4 HELIX 11 AB2 LEU A 178 ALA A 192 1 15 HELIX 12 AB3 THR A 249 ILE A 267 1 19 HELIX 13 AB4 GLU A 296 GLY A 305 1 10 HELIX 14 AB5 ASP A 307 ALA A 317 1 11 HELIX 15 AB6 LYS A 324 ILE A 328 5 5 HELIX 16 AB7 THR A 394 THR A 409 1 16 HELIX 17 AB8 ASN A 417 ASP A 427 1 11 HELIX 18 AB9 ASP A 427 GLY A 433 1 7 HELIX 19 AC1 HIS A 438 LEU A 444 1 7 SHEET 1 AA1 5 GLU A 47 GLY A 52 0 SHEET 2 AA1 5 LYS A 27 SER A 33 1 N ALA A 30 O GLU A 47 SHEET 3 AA1 5 LYS A 4 ILE A 7 1 N VAL A 5 O LYS A 27 SHEET 4 AA1 5 ALA A 77 HIS A 79 1 O HIS A 79 N VAL A 6 SHEET 5 AA1 5 THR A 101 PHE A 102 1 O THR A 101 N ILE A 78 SHEET 1 AA2 3 ARG A 170 VAL A 172 0 SHEET 2 AA2 3 ILE A 156 ALA A 160 -1 N ILE A 156 O VAL A 172 SHEET 3 AA2 3 VAL A 198 LYS A 202 -1 O GLU A 201 N ILE A 157 SHEET 1 AA3 4 ALA A 222 ASP A 229 0 SHEET 2 AA3 4 ARG A 208 ALA A 216 -1 N GLN A 213 O LEU A 225 SHEET 3 AA3 4 GLY A 271 GLU A 280 -1 O GLY A 271 N ALA A 216 SHEET 4 AA3 4 GLU A 283 ASN A 290 -1 O TYR A 285 N LEU A 278 SHEET 1 AA4 2 GLN A 233 ARG A 234 0 SHEET 2 AA4 2 GLN A 237 LYS A 238 -1 O GLN A 237 N ARG A 234 SHEET 1 AA5 4 VAL A 240 ALA A 243 0 SHEET 2 AA5 4 HIS A 333 ASN A 340 -1 O GLU A 336 N GLU A 241 SHEET 3 AA5 4 MET A 384 GLY A 392 -1 O LEU A 388 N CYS A 337 SHEET 4 AA5 4 VAL A 365 ASP A 368 -1 N ARG A 366 O ILE A 389 SHEET 1 AA6 2 GLY A 352 LYS A 353 0 SHEET 2 AA6 2 THR A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 AA7 2 LEU A 357 HIS A 358 0 SHEET 2 AA7 2 ILE A 410 ILE A 411 -1 O ILE A 410 N HIS A 358 CISPEP 1 TYR A 154 PRO A 155 0 -3.24 CISPEP 2 ALA A 243 PRO A 244 0 -2.65 SITE 1 AC1 5 PRO A 349 PRO A 378 PRO A 379 TYR A 381 SITE 2 AC1 5 ASP A 382 SITE 1 AC2 13 ILE A 157 LYS A 159 MET A 169 GLU A 201 SITE 2 AC2 13 LYS A 202 TYR A 203 LEU A 204 GLN A 233 SITE 3 AC2 13 HIS A 236 GLU A 276 LEU A 278 GLU A 288 SITE 4 AC2 13 ILE A 437 CRYST1 86.321 86.321 102.750 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011585 0.006688 0.000000 0.00000 SCALE2 0.000000 0.013377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009732 0.00000