data_6OIZ # _entry.id 6OIZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6OIZ pdb_00006oiz 10.2210/pdb6oiz/pdb WWPDB D_1000240780 ? ? EMDB EMD-20082 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-08-07 2 'Structure model' 1 1 2019-11-20 3 'Structure model' 1 2 2022-09-07 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' database_2 3 3 'Structure model' em_diffraction_shell 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_em_diffraction_shell.em_diffraction_stats_id' 5 3 'Structure model' '_em_diffraction_shell.id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6OIZ _pdbx_database_status.recvd_initial_deposition_date 2019-04-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Amyloid-Beta (20-34) wild type' _pdbx_database_related.db_id EMD-20082 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sawaya, M.R.' 1 0000-0003-0874-9043 'Warmack, R.A.' 2 0000-0002-9612-0511 'Zee, C.T.' 3 0000-0002-6630-706X 'Gonen, T.' 4 0000-0002-9254-4069 'Clarke, S.G.' 5 0000-0002-7303-6632 'Eisenberg, D.S.' 6 0000-0003-2432-5419 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 3357 _citation.page_last 3357 _citation.title ;Structure of amyloid-beta (20-34) with Alzheimer's-associated isomerization at Asp23 reveals a distinct protofilament interface. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-019-11183-z _citation.pdbx_database_id_PubMed 31350392 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Warmack, R.A.' 1 0000-0002-9612-0511 primary 'Boyer, D.R.' 2 ? primary 'Zee, C.T.' 3 ? primary 'Richards, L.S.' 4 ? primary 'Sawaya, M.R.' 5 0000-0003-0874-9043 primary 'Cascio, D.' 6 0000-0001-8285-754X primary 'Gonen, T.' 7 0000-0002-9254-4069 primary 'Eisenberg, D.S.' 8 0000-0003-2432-5419 primary 'Clarke, S.G.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Amyloid beta A4 protein' 1491.666 1 ? ? ? ? 2 water nat water 18.015 7 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code FAEDVGSNKGAIIGL _entity_poly.pdbx_seq_one_letter_code_can FAEDVGSNKGAIIGL _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 ALA n 1 3 GLU n 1 4 ASP n 1 5 VAL n 1 6 GLY n 1 7 SER n 1 8 ASN n 1 9 LYS n 1 10 GLY n 1 11 ALA n 1 12 ILE n 1 13 ILE n 1 14 GLY n 1 15 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 20 20 PHE PHE A . n A 1 2 ALA 2 21 21 ALA ALA A . n A 1 3 GLU 3 22 22 GLU GLU A . n A 1 4 ASP 4 23 23 ASP ASP A . n A 1 5 VAL 5 24 24 VAL VAL A . n A 1 6 GLY 6 25 25 GLY GLY A . n A 1 7 SER 7 26 26 SER SER A . n A 1 8 ASN 8 27 27 ASN ASN A . n A 1 9 LYS 9 28 28 LYS LYS A . n A 1 10 GLY 10 29 29 GLY GLY A . n A 1 11 ALA 11 30 30 ALA ALA A . n A 1 12 ILE 12 31 31 ILE ILE A . n A 1 13 ILE 13 32 32 ILE ILE A . n A 1 14 GLY 14 33 33 GLY GLY A . n A 1 15 LEU 15 34 34 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 3 HOH HOH A . B 2 HOH 2 102 7 HOH HOH A . B 2 HOH 3 103 2 HOH HOH A . B 2 HOH 4 104 1 HOH HOH A . B 2 HOH 5 105 8 HOH HOH A . B 2 HOH 6 106 5 HOH HOH A . B 2 HOH 7 107 6 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX ? ? package dev_3360 3 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Apr. 1, 2019' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.25 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 111.100 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6OIZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 33.170 _cell.length_a_esd ? _cell.length_b 4.780 _cell.length_b_esd ? _cell.length_c 30.330 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6OIZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.50 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 18.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _diffrn.ambient_environment ? _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector 'CMOS DETECTOR' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'FEI CETA (4k x 4k)' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-03-21 # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.0251 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.0251 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ELECTRON MICROSCOPE' _diffrn_source.take-off_angle ? _diffrn_source.target ? _diffrn_source.type 'FEI TALOS ARCTICA' _diffrn_source.voltage ? # _reflns.B_iso_Wilson_estimate 10.090 _reflns.entry_id 6OIZ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.100 _reflns.d_resolution_low 7.737 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3546 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 85.200 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.666 _reflns.pdbx_Rmerge_I_obs 0.189 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.410 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.739 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.204 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 23638 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.987 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.100 1.130 ? 3.280 ? 1566 312 ? 255 81.700 ? ? ? ? 0.459 ? ? ? ? ? ? ? ? 6.141 ? ? ? ? 0.498 ? ? 1 1 0.828 ? 1.130 1.160 ? 3.530 ? 1944 303 ? 271 89.400 ? ? ? ? 0.469 ? ? ? ? ? ? ? ? 7.173 ? ? ? ? 0.503 ? ? 2 1 0.864 ? 1.160 1.190 ? 3.810 ? 2131 299 ? 262 87.600 ? ? ? ? 0.489 ? ? ? ? ? ? ? ? 8.134 ? ? ? ? 0.522 ? ? 3 1 0.858 ? 1.190 1.230 ? 3.460 ? 1094 243 ? 211 86.800 ? ? ? ? 0.409 ? ? ? ? ? ? ? ? 5.185 ? ? ? ? 0.454 ? ? 4 1 0.830 ? 1.230 1.270 ? 4.200 ? 1034 244 ? 207 84.800 ? ? ? ? 0.315 ? ? ? ? ? ? ? ? 4.995 ? ? ? ? 0.350 ? ? 5 1 0.874 ? 1.270 1.310 ? 4.260 ? 1082 238 ? 208 87.400 ? ? ? ? 0.308 ? ? ? ? ? ? ? ? 5.202 ? ? ? ? 0.338 ? ? 6 1 0.889 ? 1.310 1.360 ? 4.180 ? 1198 244 ? 212 86.900 ? ? ? ? 0.346 ? ? ? ? ? ? ? ? 5.651 ? ? ? ? 0.381 ? ? 7 1 0.876 ? 1.360 1.420 ? 4.110 ? 1254 244 ? 214 87.700 ? ? ? ? 0.390 ? ? ? ? ? ? ? ? 5.860 ? ? ? ? 0.430 ? ? 8 1 0.848 ? 1.420 1.480 ? 5.260 ? 1581 250 ? 220 88.000 ? ? ? ? 0.315 ? ? ? ? ? ? ? ? 7.186 ? ? ? ? 0.340 ? ? 9 1 0.896 ? 1.480 1.560 ? 6.340 ? 1924 244 ? 212 86.900 ? ? ? ? 0.310 ? ? ? ? ? ? ? ? 9.075 ? ? ? ? 0.330 ? ? 10 1 0.898 ? 1.560 1.640 ? 7.040 ? 1617 213 ? 188 88.300 ? ? ? ? 0.243 ? ? ? ? ? ? ? ? 8.601 ? ? ? ? 0.258 ? ? 11 1 0.929 ? 1.640 1.740 ? 5.990 ? 904 183 ? 152 83.100 ? ? ? ? 0.239 ? ? ? ? ? ? ? ? 5.947 ? ? ? ? 0.262 ? ? 12 1 0.906 ? 1.740 1.860 ? 6.430 ? 925 181 ? 151 83.400 ? ? ? ? 0.228 ? ? ? ? ? ? ? ? 6.126 ? ? ? ? 0.250 ? ? 13 1 0.947 ? 1.860 2.010 ? 7.420 ? 1092 189 ? 160 84.700 ? ? ? ? 0.199 ? ? ? ? ? ? ? ? 6.825 ? ? ? ? 0.216 ? ? 14 1 0.970 ? 2.010 2.200 ? 8.020 ? 1072 175 ? 148 84.600 ? ? ? ? 0.179 ? ? ? ? ? ? ? ? 7.243 ? ? ? ? 0.193 ? ? 15 1 0.978 ? 2.200 2.460 ? 8.960 ? 1315 169 ? 149 88.200 ? ? ? ? 0.173 ? ? ? ? ? ? ? ? 8.826 ? ? ? ? 0.184 ? ? 16 1 0.977 ? 2.460 2.840 ? 7.550 ? 506 126 ? 96 76.200 ? ? ? ? 0.150 ? ? ? ? ? ? ? ? 5.271 ? ? ? ? 0.167 ? ? 17 1 0.960 ? 2.840 3.480 ? 7.820 ? 545 124 ? 103 83.100 ? ? ? ? 0.126 ? ? ? ? ? ? ? ? 5.291 ? ? ? ? 0.141 ? ? 18 1 0.990 ? 3.480 4.920 ? 9.900 ? 766 118 ? 101 85.600 ? ? ? ? 0.125 ? ? ? ? ? ? ? ? 7.584 ? ? ? ? 0.132 ? ? 19 1 0.982 ? 4.920 7.737 ? 6.870 ? 88 61 ? 26 42.600 ? ? ? ? 0.133 ? ? ? ? ? ? ? ? 3.385 ? ? ? ? 0.155 ? ? 20 1 0.982 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 34.510 _refine.B_iso_mean 8.1410 _refine.B_iso_min 2.200 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6OIZ _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.1000 _refine.ls_d_res_low 7.7370 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3544 _refine.ls_number_reflns_R_free 352 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 85.8300 _refine.ls_percent_reflns_R_free 9.9300 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1963 _refine.ls_R_factor_R_free 0.2126 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1944 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.410 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.6800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.1000 _refine_hist.d_res_low 7.7370 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 112 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 15 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 20.78 _refine_hist.pdbx_number_atoms_protein 105 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.1000 1.2586 1141 . 114 1027 86.0000 . . . 0.2690 0.0000 0.2126 . . . . . . 3 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.2586 1.5835 1207 . 119 1088 87.0000 . . . 0.2426 0.0000 0.2178 . . . . . . 3 . . . 'ELECTRON CRYSTALLOGRAPHY' 1.5835 7.7369 1196 . 119 1077 84.0000 . . . 0.1850 0.0000 0.1791 . . . . . . 3 . . . # _struct.entry_id 6OIZ _struct.title 'Amyloid-Beta (20-34) wild type' _struct.pdbx_model_details ;Protofilament structure of Amyloid-beta 20-34 with the age-associated post-translational modification of aspartate isomerization at position 23 ; _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6OIZ _struct_keywords.text 'protofilament, 2 sub 1 screw symmetry, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code L7XCZ9_HUMAN _struct_ref.pdbx_db_accession L7XCZ9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code FAEDVGSNKGAIIGL _struct_ref.pdbx_align_begin 3 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6OIZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 15 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession L7XCZ9 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 17 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 34 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -9.5600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -4.7800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.7800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.5600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _em_3d_fitting.entry_id 6OIZ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'maximum liklihood' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6OIZ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'crystal of amyloid-beta residues 20-34 wild type' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6OIZ _em_image_scans.id 1 _em_image_scans.dimension_height 2048 _em_image_scans.dimension_width 2048 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6OIZ _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum 100 _em_imaging.recording_temperature_minimum 100 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details '30 seconds on each side' _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil, UltrAuFoil, R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 100 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6OIZ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6OIZ _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLU N N N N 47 GLU CA C N S 48 GLU C C N N 49 GLU O O N N 50 GLU CB C N N 51 GLU CG C N N 52 GLU CD C N N 53 GLU OE1 O N N 54 GLU OE2 O N N 55 GLU OXT O N N 56 GLU H H N N 57 GLU H2 H N N 58 GLU HA H N N 59 GLU HB2 H N N 60 GLU HB3 H N N 61 GLU HG2 H N N 62 GLU HG3 H N N 63 GLU HE2 H N N 64 GLU HXT H N N 65 GLY N N N N 66 GLY CA C N N 67 GLY C C N N 68 GLY O O N N 69 GLY OXT O N N 70 GLY H H N N 71 GLY H2 H N N 72 GLY HA2 H N N 73 GLY HA3 H N N 74 GLY HXT H N N 75 HOH O O N N 76 HOH H1 H N N 77 HOH H2 H N N 78 ILE N N N N 79 ILE CA C N S 80 ILE C C N N 81 ILE O O N N 82 ILE CB C N S 83 ILE CG1 C N N 84 ILE CG2 C N N 85 ILE CD1 C N N 86 ILE OXT O N N 87 ILE H H N N 88 ILE H2 H N N 89 ILE HA H N N 90 ILE HB H N N 91 ILE HG12 H N N 92 ILE HG13 H N N 93 ILE HG21 H N N 94 ILE HG22 H N N 95 ILE HG23 H N N 96 ILE HD11 H N N 97 ILE HD12 H N N 98 ILE HD13 H N N 99 ILE HXT H N N 100 LEU N N N N 101 LEU CA C N S 102 LEU C C N N 103 LEU O O N N 104 LEU CB C N N 105 LEU CG C N N 106 LEU CD1 C N N 107 LEU CD2 C N N 108 LEU OXT O N N 109 LEU H H N N 110 LEU H2 H N N 111 LEU HA H N N 112 LEU HB2 H N N 113 LEU HB3 H N N 114 LEU HG H N N 115 LEU HD11 H N N 116 LEU HD12 H N N 117 LEU HD13 H N N 118 LEU HD21 H N N 119 LEU HD22 H N N 120 LEU HD23 H N N 121 LEU HXT H N N 122 LYS N N N N 123 LYS CA C N S 124 LYS C C N N 125 LYS O O N N 126 LYS CB C N N 127 LYS CG C N N 128 LYS CD C N N 129 LYS CE C N N 130 LYS NZ N N N 131 LYS OXT O N N 132 LYS H H N N 133 LYS H2 H N N 134 LYS HA H N N 135 LYS HB2 H N N 136 LYS HB3 H N N 137 LYS HG2 H N N 138 LYS HG3 H N N 139 LYS HD2 H N N 140 LYS HD3 H N N 141 LYS HE2 H N N 142 LYS HE3 H N N 143 LYS HZ1 H N N 144 LYS HZ2 H N N 145 LYS HZ3 H N N 146 LYS HXT H N N 147 PHE N N N N 148 PHE CA C N S 149 PHE C C N N 150 PHE O O N N 151 PHE CB C N N 152 PHE CG C Y N 153 PHE CD1 C Y N 154 PHE CD2 C Y N 155 PHE CE1 C Y N 156 PHE CE2 C Y N 157 PHE CZ C Y N 158 PHE OXT O N N 159 PHE H H N N 160 PHE H2 H N N 161 PHE HA H N N 162 PHE HB2 H N N 163 PHE HB3 H N N 164 PHE HD1 H N N 165 PHE HD2 H N N 166 PHE HE1 H N N 167 PHE HE2 H N N 168 PHE HZ H N N 169 PHE HXT H N N 170 SER N N N N 171 SER CA C N S 172 SER C C N N 173 SER O O N N 174 SER CB C N N 175 SER OG O N N 176 SER OXT O N N 177 SER H H N N 178 SER H2 H N N 179 SER HA H N N 180 SER HB2 H N N 181 SER HB3 H N N 182 SER HG H N N 183 SER HXT H N N 184 VAL N N N N 185 VAL CA C N S 186 VAL C C N N 187 VAL O O N N 188 VAL CB C N N 189 VAL CG1 C N N 190 VAL CG2 C N N 191 VAL OXT O N N 192 VAL H H N N 193 VAL H2 H N N 194 VAL HA H N N 195 VAL HB H N N 196 VAL HG11 H N N 197 VAL HG12 H N N 198 VAL HG13 H N N 199 VAL HG21 H N N 200 VAL HG22 H N N 201 VAL HG23 H N N 202 VAL HXT H N N 203 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLU N CA sing N N 44 GLU N H sing N N 45 GLU N H2 sing N N 46 GLU CA C sing N N 47 GLU CA CB sing N N 48 GLU CA HA sing N N 49 GLU C O doub N N 50 GLU C OXT sing N N 51 GLU CB CG sing N N 52 GLU CB HB2 sing N N 53 GLU CB HB3 sing N N 54 GLU CG CD sing N N 55 GLU CG HG2 sing N N 56 GLU CG HG3 sing N N 57 GLU CD OE1 doub N N 58 GLU CD OE2 sing N N 59 GLU OE2 HE2 sing N N 60 GLU OXT HXT sing N N 61 GLY N CA sing N N 62 GLY N H sing N N 63 GLY N H2 sing N N 64 GLY CA C sing N N 65 GLY CA HA2 sing N N 66 GLY CA HA3 sing N N 67 GLY C O doub N N 68 GLY C OXT sing N N 69 GLY OXT HXT sing N N 70 HOH O H1 sing N N 71 HOH O H2 sing N N 72 ILE N CA sing N N 73 ILE N H sing N N 74 ILE N H2 sing N N 75 ILE CA C sing N N 76 ILE CA CB sing N N 77 ILE CA HA sing N N 78 ILE C O doub N N 79 ILE C OXT sing N N 80 ILE CB CG1 sing N N 81 ILE CB CG2 sing N N 82 ILE CB HB sing N N 83 ILE CG1 CD1 sing N N 84 ILE CG1 HG12 sing N N 85 ILE CG1 HG13 sing N N 86 ILE CG2 HG21 sing N N 87 ILE CG2 HG22 sing N N 88 ILE CG2 HG23 sing N N 89 ILE CD1 HD11 sing N N 90 ILE CD1 HD12 sing N N 91 ILE CD1 HD13 sing N N 92 ILE OXT HXT sing N N 93 LEU N CA sing N N 94 LEU N H sing N N 95 LEU N H2 sing N N 96 LEU CA C sing N N 97 LEU CA CB sing N N 98 LEU CA HA sing N N 99 LEU C O doub N N 100 LEU C OXT sing N N 101 LEU CB CG sing N N 102 LEU CB HB2 sing N N 103 LEU CB HB3 sing N N 104 LEU CG CD1 sing N N 105 LEU CG CD2 sing N N 106 LEU CG HG sing N N 107 LEU CD1 HD11 sing N N 108 LEU CD1 HD12 sing N N 109 LEU CD1 HD13 sing N N 110 LEU CD2 HD21 sing N N 111 LEU CD2 HD22 sing N N 112 LEU CD2 HD23 sing N N 113 LEU OXT HXT sing N N 114 LYS N CA sing N N 115 LYS N H sing N N 116 LYS N H2 sing N N 117 LYS CA C sing N N 118 LYS CA CB sing N N 119 LYS CA HA sing N N 120 LYS C O doub N N 121 LYS C OXT sing N N 122 LYS CB CG sing N N 123 LYS CB HB2 sing N N 124 LYS CB HB3 sing N N 125 LYS CG CD sing N N 126 LYS CG HG2 sing N N 127 LYS CG HG3 sing N N 128 LYS CD CE sing N N 129 LYS CD HD2 sing N N 130 LYS CD HD3 sing N N 131 LYS CE NZ sing N N 132 LYS CE HE2 sing N N 133 LYS CE HE3 sing N N 134 LYS NZ HZ1 sing N N 135 LYS NZ HZ2 sing N N 136 LYS NZ HZ3 sing N N 137 LYS OXT HXT sing N N 138 PHE N CA sing N N 139 PHE N H sing N N 140 PHE N H2 sing N N 141 PHE CA C sing N N 142 PHE CA CB sing N N 143 PHE CA HA sing N N 144 PHE C O doub N N 145 PHE C OXT sing N N 146 PHE CB CG sing N N 147 PHE CB HB2 sing N N 148 PHE CB HB3 sing N N 149 PHE CG CD1 doub Y N 150 PHE CG CD2 sing Y N 151 PHE CD1 CE1 sing Y N 152 PHE CD1 HD1 sing N N 153 PHE CD2 CE2 doub Y N 154 PHE CD2 HD2 sing N N 155 PHE CE1 CZ doub Y N 156 PHE CE1 HE1 sing N N 157 PHE CE2 CZ sing Y N 158 PHE CE2 HE2 sing N N 159 PHE CZ HZ sing N N 160 PHE OXT HXT sing N N 161 SER N CA sing N N 162 SER N H sing N N 163 SER N H2 sing N N 164 SER CA C sing N N 165 SER CA CB sing N N 166 SER CA HA sing N N 167 SER C O doub N N 168 SER C OXT sing N N 169 SER CB OG sing N N 170 SER CB HB2 sing N N 171 SER CB HB3 sing N N 172 SER OG HG sing N N 173 SER OXT HXT sing N N 174 VAL N CA sing N N 175 VAL N H sing N N 176 VAL N H2 sing N N 177 VAL CA C sing N N 178 VAL CA CB sing N N 179 VAL CA HA sing N N 180 VAL C O doub N N 181 VAL C OXT sing N N 182 VAL CB CG1 sing N N 183 VAL CB CG2 sing N N 184 VAL CB HB sing N N 185 VAL CG1 HG11 sing N N 186 VAL CG1 HG12 sing N N 187 VAL CG1 HG13 sing N N 188 VAL CG2 HG21 sing N N 189 VAL CG2 HG22 sing N N 190 VAL CG2 HG23 sing N N 191 VAL OXT HXT sing N N 192 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 111.1 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 33.170 _em_3d_crystal_entity.length_b 4.78 _em_3d_crystal_entity.length_c 30.33 _em_3d_crystal_entity.space_group_name 'P 21' _em_3d_crystal_entity.space_group_num 4 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 ? ? ? water 1 2 50 mM ? 'tris base' 1 3 150 mM NaCl ? 1 4 1 % ? dimethylsulfoxide # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere air _em_crystal_formation.details 'shaken at 1200 rpm' _em_crystal_formation.instrument 'Varioscan plate reader' _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature 310 _em_crystal_formation.time 30 _em_crystal_formation.time_unit HOUR # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1050 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 41.2 _em_diffraction_shell.high_resolution 1.00 _em_diffraction_shell.low_resolution 1.05 _em_diffraction_shell.multiplicity 3.09 _em_diffraction_shell.num_structure_factors 315 _em_diffraction_shell.phase_residual 0.1 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 85.2 _em_diffraction_stats.high_resolution 1.1 _em_diffraction_stats.num_intensities_measured 23638 _em_diffraction_stats.num_structure_factors 3546 _em_diffraction_stats.overall_phase_error 22.7 _em_diffraction_stats.overall_phase_residual 0.1 _em_diffraction_stats.phase_error_rejection_criteria 0.1 _em_diffraction_stats.r_merge 0.189 _em_diffraction_stats.r_sym 0.189 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 6.21 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.01 _em_image_recording.average_exposure_time 3 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI CETA (4k x 4k)' _em_image_recording.num_diffraction_images 404 _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot 0.8.9.1 ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 'dev 3360' ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 5.0 _em_specimen.details 'This sample is a crystal.' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' 'United States' 5T32GM008496 1 'National Science Foundation (NSF, United States)' 'United States' MCB-1714569 2 'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' 'United States' GM-007185 3 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 4 # _atom_sites.entry_id 6OIZ _atom_sites.fract_transf_matrix[1][1] 0.030148 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011631 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.209205 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.035339 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O # loop_