HEADER LIGASE 11-APR-19 6OJH TITLE CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE BIOTIN CARBOXYLASE TITLE 2 COMPLEXED WITH (R)-7-(3-AMINOPYRROLIDIN-1-YL)-6-(NAPHTHALEN-1-YL) TITLE 3 PYRIDO[2,3-D]PYRIMIDIN-2-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A,ACC; COMPND 5 EC: 6.3.4.14,6.4.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM SOURCE 3 11121 / KW20 / RD); SOURCE 4 ORGANISM_TAXID: 71421; SOURCE 5 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 6 GENE: ACCC, HI_0972; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP GRASP, CARBOXYLASE, INHIBITOR, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.D.ANDREWS,T.R.KANE,P.DOZZO,C.M.HAGLUND,D.J.HILDERBRANDT, AUTHOR 2 M.S.LINSELL,T.MACHAJEWSKI,G.MCENROE,A.W.SERIO,K.B.WLASICHUK, AUTHOR 3 D.B.NEAU,S.PAKHOMOVA,G.L.WALDROP,M.SHARP,J.POGLIANO,R.CIRZ,F.COHEN REVDAT 2 11-OCT-23 6OJH 1 REMARK REVDAT 1 12-FEB-20 6OJH 0 JRNL AUTH L.D.ANDREWS,T.R.KANE,P.DOZZO,C.M.HAGLUND,D.J.HILDERBRANDT, JRNL AUTH 2 M.S.LINSELL,T.MACHAJEWSKI,G.MCENROE,A.W.SERIO,K.B.WLASICHUK, JRNL AUTH 3 D.B.NEAU,S.PAKHOMOVA,G.L.WALDROP,M.SHARP,J.POGLIANO,R.CIRZ, JRNL AUTH 4 F.COHEN JRNL TITL CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE BIOTIN JRNL TITL 2 CARBOXYLASE COMPLEXED WITH JRNL TITL 3 (R)-7-(3-AMINOPYRROLIDIN-1-YL)-6-(NAPHTHALEN-1-YL)PYRIDO[2, JRNL TITL 4 3-D]PYRIMIDIN-2-AMINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1376 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1871 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3413 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.425 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3541 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3362 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4792 ; 1.602 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7802 ; 1.335 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 6.767 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;33.892 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 624 ;16.384 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;14.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3997 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 716 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1793 ; 0.828 ; 1.798 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1790 ; 0.816 ; 1.795 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2242 ; 1.305 ; 2.689 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2242 ; 1.301 ; 2.689 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1748 ; 1.074 ; 1.963 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1749 ; 1.074 ; 1.965 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2547 ; 1.673 ; 2.889 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3924 ; 4.283 ;21.985 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3925 ; 4.283 ;21.997 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 5 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2114 -14.7517 -1.2148 REMARK 3 T TENSOR REMARK 3 T11: 0.4532 T22: 0.4619 REMARK 3 T33: 0.2996 T12: 0.1135 REMARK 3 T13: 0.0232 T23: 0.1828 REMARK 3 L TENSOR REMARK 3 L11: 4.7387 L22: 2.3078 REMARK 3 L33: 9.5122 L12: 0.3738 REMARK 3 L13: -1.2478 L23: -3.4491 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -1.3101 S13: -0.7952 REMARK 3 S21: 0.6121 S22: 0.1955 S23: 0.1775 REMARK 3 S31: -0.0099 S32: 0.2292 S33: -0.2186 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6461 -4.1899 -8.3414 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.0808 REMARK 3 T33: 0.1301 T12: -0.0367 REMARK 3 T13: -0.0508 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 3.4488 L22: 2.9901 REMARK 3 L33: 1.8616 L12: 0.7250 REMARK 3 L13: 0.5719 L23: -0.5258 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: 0.1148 S13: -0.2000 REMARK 3 S21: -0.2219 S22: 0.1393 S23: 0.5200 REMARK 3 S31: 0.1443 S32: -0.1522 S33: -0.1270 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1794 26.5707 8.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.3349 T22: 0.3589 REMARK 3 T33: 0.3721 T12: 0.0663 REMARK 3 T13: 0.0822 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.9209 L22: 6.2671 REMARK 3 L33: 1.3414 L12: -0.3516 REMARK 3 L13: -0.0345 L23: -0.3657 REMARK 3 S TENSOR REMARK 3 S11: -0.2139 S12: 0.0706 S13: 0.2182 REMARK 3 S21: -0.0476 S22: 0.1360 S23: 0.6703 REMARK 3 S31: -0.4111 S32: -0.4482 S33: 0.0780 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9761 26.5311 1.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.4620 T22: 0.3967 REMARK 3 T33: 0.4349 T12: 0.0107 REMARK 3 T13: 0.0293 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 7.0104 L22: 4.0149 REMARK 3 L33: 2.6216 L12: 1.1962 REMARK 3 L13: 3.3471 L23: 0.0311 REMARK 3 S TENSOR REMARK 3 S11: -0.4278 S12: 0.3473 S13: 0.3590 REMARK 3 S21: -0.7185 S22: 0.2764 S23: 0.6126 REMARK 3 S31: -0.2154 S32: -0.3911 S33: 0.1514 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4315 8.0435 9.0178 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.1947 REMARK 3 T33: 0.0530 T12: 0.0290 REMARK 3 T13: 0.0398 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.3119 L22: 3.4618 REMARK 3 L33: 0.6238 L12: 1.1072 REMARK 3 L13: -0.6191 L23: -0.1111 REMARK 3 S TENSOR REMARK 3 S11: 0.0719 S12: -0.3920 S13: 0.2911 REMARK 3 S21: 0.4318 S22: 0.0701 S23: 0.2586 REMARK 3 S31: -0.1091 S32: -0.0613 S33: -0.1419 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 332 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4321 13.3938 -9.4816 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.0754 REMARK 3 T33: 0.1048 T12: 0.0066 REMARK 3 T13: 0.0077 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.4996 L22: 1.6500 REMARK 3 L33: 1.9874 L12: 0.2636 REMARK 3 L13: 0.6511 L23: -0.3186 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: 0.1931 S13: 0.4539 REMARK 3 S21: -0.1895 S22: 0.0359 S23: -0.0685 REMARK 3 S31: -0.1503 S32: 0.0790 S33: 0.0132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6OJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27210 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 39.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RZQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CA ACETATE, 14% PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.94333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.88667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.94333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.88667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 85.68800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 628 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 753 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 446 REMARK 465 ASN A 447 REMARK 465 GLU A 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 193 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 679 O HOH A 756 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 211 CD GLU A 211 OE1 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -170.73 -170.24 REMARK 500 SER A 59 -83.39 -135.65 REMARK 500 PHE A 84 -121.77 46.99 REMARK 500 SER A 139 -161.36 -78.18 REMARK 500 ASP A 141 101.66 -57.37 REMARK 500 ALA A 192 -70.65 -72.70 REMARK 500 ALA A 226 -134.61 44.87 REMARK 500 TYR A 381 -168.58 -124.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 276 OE2 REMARK 620 2 GLU A 288 OE1 92.1 REMARK 620 3 ASN A 290 OD1 82.6 156.1 REMARK 620 4 ACT A 503 OXT 88.7 124.9 78.4 REMARK 620 5 ACT A 503 O 99.8 76.2 127.6 49.6 REMARK 620 6 HOH A 695 O 116.6 81.3 80.3 144.3 137.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MV4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 503 DBREF 6OJH A 1 448 UNP P43873 ACCC_HAEIN 1 448 SEQADV 6OJH MET A -19 UNP P43873 INITIATING METHIONINE SEQADV 6OJH GLY A -18 UNP P43873 EXPRESSION TAG SEQADV 6OJH SER A -17 UNP P43873 EXPRESSION TAG SEQADV 6OJH SER A -16 UNP P43873 EXPRESSION TAG SEQADV 6OJH HIS A -15 UNP P43873 EXPRESSION TAG SEQADV 6OJH HIS A -14 UNP P43873 EXPRESSION TAG SEQADV 6OJH HIS A -13 UNP P43873 EXPRESSION TAG SEQADV 6OJH HIS A -12 UNP P43873 EXPRESSION TAG SEQADV 6OJH HIS A -11 UNP P43873 EXPRESSION TAG SEQADV 6OJH HIS A -10 UNP P43873 EXPRESSION TAG SEQADV 6OJH SER A -9 UNP P43873 EXPRESSION TAG SEQADV 6OJH SER A -8 UNP P43873 EXPRESSION TAG SEQADV 6OJH GLY A -7 UNP P43873 EXPRESSION TAG SEQADV 6OJH LEU A -6 UNP P43873 EXPRESSION TAG SEQADV 6OJH VAL A -5 UNP P43873 EXPRESSION TAG SEQADV 6OJH PRO A -4 UNP P43873 EXPRESSION TAG SEQADV 6OJH ARG A -3 UNP P43873 EXPRESSION TAG SEQADV 6OJH GLY A -2 UNP P43873 EXPRESSION TAG SEQADV 6OJH SER A -1 UNP P43873 EXPRESSION TAG SEQADV 6OJH HIS A 0 UNP P43873 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 468 LEU VAL PRO ARG GLY SER HIS MET LEU GLU LYS VAL VAL SEQRES 3 A 468 ILE ALA ASN ARG GLY GLU ILE ALA LEU ARG ILE LEU ARG SEQRES 4 A 468 ALA CYS LYS GLU LEU GLY ILE LYS THR VAL ALA VAL HIS SEQRES 5 A 468 SER THR ALA ASP ARG ASP LEU LYS HIS VAL LEU LEU ALA SEQRES 6 A 468 ASP GLU THR ILE CYS ILE GLY PRO ALA PRO SER ALA LYS SEQRES 7 A 468 SER TYR LEU ASN ILE PRO ALA ILE ILE ALA ALA ALA GLU SEQRES 8 A 468 VAL THR GLY ALA ASP ALA ILE HIS PRO GLY TYR GLY PHE SEQRES 9 A 468 LEU SER GLU ASN ALA ASP PHE ALA GLU GLN VAL GLU ARG SEQRES 10 A 468 SER GLY PHE THR PHE ILE GLY PRO THR ALA ASP VAL ILE SEQRES 11 A 468 ARG LEU MET GLY ASP LYS VAL SER ALA ILE LYS ALA MET SEQRES 12 A 468 LYS LYS ALA GLY VAL PRO CYS VAL PRO GLY SER ASP GLY SEQRES 13 A 468 PRO VAL SER ASN ASP ILE ALA LYS ASN LYS GLU ILE ALA SEQRES 14 A 468 LYS ARG ILE GLY TYR PRO ILE ILE ILE LYS ALA SER GLY SEQRES 15 A 468 GLY GLY GLY GLY ARG GLY MET ARG VAL VAL ARG SER GLU SEQRES 16 A 468 ASP ALA LEU GLU GLU SER ILE ALA MET THR LYS ALA GLU SEQRES 17 A 468 ALA LYS ALA ALA PHE ASN ASN ASP MET VAL TYR MET GLU SEQRES 18 A 468 LYS TYR LEU GLU ASN PRO ARG HIS VAL GLU ILE GLN VAL SEQRES 19 A 468 LEU ALA ASP THR HIS GLY ASN ALA VAL TYR LEU ALA GLU SEQRES 20 A 468 ARG ASP CYS SER MET GLN ARG ARG HIS GLN LYS VAL VAL SEQRES 21 A 468 GLU GLU ALA PRO ALA PRO GLY ILE THR GLU GLU VAL ARG SEQRES 22 A 468 ARG ASP ILE GLY SER ARG CYS ALA ASN ALA CYS VAL GLU SEQRES 23 A 468 ILE GLY TYR ARG GLY ALA GLY THR PHE GLU PHE LEU TYR SEQRES 24 A 468 GLU ASN GLY GLU PHE TYR PHE ILE GLU MET ASN THR ARG SEQRES 25 A 468 ILE GLN VAL GLU HIS PRO VAL THR GLU MET ILE THR GLY SEQRES 26 A 468 VAL ASP LEU VAL LYS GLU GLN LEU ARG ILE ALA ALA GLY SEQRES 27 A 468 LEU PRO ILE SER PHE LYS GLN GLU ASP ILE LYS VAL LYS SEQRES 28 A 468 GLY HIS ALA MET GLU CYS ARG ILE ASN ALA GLU ASP PRO SEQRES 29 A 468 LYS THR PHE LEU PRO SER PRO GLY LYS VAL ASN HIS LEU SEQRES 30 A 468 HIS SER PRO GLY GLY LEU GLY VAL ARG TRP ASP SER HIS SEQRES 31 A 468 VAL TYR GLY GLY TYR THR VAL PRO PRO HIS TYR ASP SER SEQRES 32 A 468 MET ILE ALA LYS LEU ILE THR TYR GLY ASP THR ARG GLU SEQRES 33 A 468 VAL ALA ILE ARG ARG MET GLN ASN ALA LEU SER GLU THR SEQRES 34 A 468 ILE ILE ASP GLY ILE LYS THR ASN ILE PRO LEU HIS GLU SEQRES 35 A 468 LEU ILE LEU GLU ASP GLU ASN PHE GLN LYS GLY GLY THR SEQRES 36 A 468 ASN ILE HIS TYR LEU GLU LYS LYS LEU GLY MET ASN GLU HET MV4 A 501 27 HET CA A 502 1 HET ACT A 503 4 HETNAM MV4 7-[(3R)-3-AMINOPYRROLIDIN-1-YL]-6-(NAPHTHALEN-1-YL) HETNAM 2 MV4 PYRIDO[2,3-D]PYRIMIDIN-2-AMINE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION FORMUL 2 MV4 C21 H20 N6 FORMUL 3 CA CA 2+ FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *171(H2 O) HELIX 1 AA1 ARG A 10 LEU A 24 1 15 HELIX 2 AA2 ALA A 35 ARG A 37 5 3 HELIX 3 AA3 LEU A 39 ALA A 45 1 7 HELIX 4 AA4 PRO A 55 SER A 59 5 5 HELIX 5 AA5 ASN A 62 GLY A 74 1 13 HELIX 6 AA6 ASN A 88 SER A 98 1 11 HELIX 7 AA7 THR A 106 ASP A 115 1 10 HELIX 8 AA8 ASP A 115 GLY A 127 1 13 HELIX 9 AA9 ASP A 141 GLY A 153 1 13 HELIX 10 AB1 SER A 174 ASP A 176 5 3 HELIX 11 AB2 ALA A 177 ASN A 194 1 18 HELIX 12 AB3 THR A 249 GLY A 268 1 20 HELIX 13 AB4 GLU A 296 GLY A 305 1 10 HELIX 14 AB5 ASP A 307 ALA A 317 1 11 HELIX 15 AB6 LYS A 324 ILE A 328 5 5 HELIX 16 AB7 THR A 394 THR A 409 1 16 HELIX 17 AB8 ASN A 417 ASP A 427 1 11 HELIX 18 AB9 ASP A 427 GLY A 433 1 7 HELIX 19 AC1 HIS A 438 GLY A 445 1 8 SHEET 1 AA1 5 GLU A 47 GLY A 52 0 SHEET 2 AA1 5 LYS A 27 SER A 33 1 N ALA A 30 O GLU A 47 SHEET 3 AA1 5 LYS A 4 ILE A 7 1 N ILE A 7 O VAL A 29 SHEET 4 AA1 5 ALA A 77 HIS A 79 1 O ALA A 77 N VAL A 6 SHEET 5 AA1 5 THR A 101 PHE A 102 1 O THR A 101 N ILE A 78 SHEET 1 AA2 3 MET A 169 VAL A 172 0 SHEET 2 AA2 3 ILE A 156 ALA A 160 -1 N ILE A 158 O ARG A 170 SHEET 3 AA2 3 VAL A 198 LYS A 202 -1 O GLU A 201 N ILE A 157 SHEET 1 AA3 8 GLU A 283 ASN A 290 0 SHEET 2 AA3 8 GLY A 271 GLU A 280 -1 N LEU A 278 O TYR A 285 SHEET 3 AA3 8 ARG A 208 ALA A 216 -1 N ILE A 212 O PHE A 275 SHEET 4 AA3 8 ALA A 222 ARG A 234 -1 O LEU A 225 N GLN A 213 SHEET 5 AA3 8 GLN A 237 ALA A 243 -1 O VAL A 239 N MET A 232 SHEET 6 AA3 8 HIS A 333 ASN A 340 -1 O GLU A 336 N GLU A 241 SHEET 7 AA3 8 MET A 384 GLY A 392 -1 O ILE A 385 N ILE A 339 SHEET 8 AA3 8 VAL A 365 ASP A 368 -1 N ARG A 366 O ILE A 389 SHEET 1 AA4 2 GLY A 352 LYS A 353 0 SHEET 2 AA4 2 THR A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 AA5 2 HIS A 356 HIS A 358 0 SHEET 2 AA5 2 ILE A 410 ASP A 412 -1 O ILE A 410 N HIS A 358 LINK OE2 GLU A 276 CA CA A 502 1555 1555 2.52 LINK OE1 GLU A 288 CA CA A 502 1555 1555 2.43 LINK OD1 ASN A 290 CA CA A 502 1555 1555 2.48 LINK CA CA A 502 OXT ACT A 503 1555 1555 2.50 LINK CA CA A 502 O ACT A 503 1555 1555 2.75 LINK CA CA A 502 O HOH A 695 1555 1555 2.53 CISPEP 1 TYR A 154 PRO A 155 0 1.93 CISPEP 2 ALA A 243 PRO A 244 0 -12.60 SITE 1 AC1 12 ILE A 157 LYS A 159 MET A 169 GLU A 201 SITE 2 AC1 12 LYS A 202 TYR A 203 LEU A 204 HIS A 236 SITE 3 AC1 12 LEU A 278 GLU A 288 ILE A 437 HOH A 658 SITE 1 AC2 5 GLU A 276 GLU A 288 ASN A 290 ACT A 503 SITE 2 AC2 5 HOH A 695 SITE 1 AC3 7 GLU A 276 GLU A 288 ASN A 290 ARG A 292 SITE 2 AC3 7 CA A 502 HOH A 610 HOH A 658 CRYST1 85.688 85.688 104.830 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011670 0.006738 0.000000 0.00000 SCALE2 0.000000 0.013476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009539 0.00000