HEADER TRANSFERASE 14-APR-19 6OKO TITLE CRYSTAL STRUCTURE OF MRIPK3 COMPLEXED WITH N-(3-FLUORO-4-{1H- TITLE 2 PYRROLO[2,3-B]PYRIDIN-4-YLOXY}PHENYL)-1-(4-FLUOROPHENYL)-2-OXO-1,2- TITLE 3 DIHYDROPYRIDINE-3-CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-313; COMPND 5 SYNONYM: RIP-LIKE PROTEIN KINASE 3, RECEPTOR-INTERACTING PROTEIN 3, COMPND 6 MRIP3; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIPK3, RIP3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, RIPK3, RIP3, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.POKROSS REVDAT 3 13-MAR-24 6OKO 1 REMARK REVDAT 2 01-APR-20 6OKO 1 JRNL REVDAT 1 17-JUL-19 6OKO 0 JRNL AUTH A.C.HART,L.ABELL,J.GUO,M.E.MERTZMAN,R.PADMANABHA,J.E.MACOR, JRNL AUTH 2 C.CHAUDHRY,H.LU,K.O'MALLEY,P.J.SHAW,C.WEIGELT,M.POKROSS, JRNL AUTH 3 K.KISH,K.S.KIM,L.CORNELIUS,A.E.DOUGLAS,D.CALAMBUR,P.ZHANG, JRNL AUTH 4 B.CARPENTER,W.J.PITTS JRNL TITL IDENTIFICATION OF RIPK3 TYPE II INHIBITORS USING JRNL TITL 2 HIGH-THROUGHPUT MECHANISTIC STUDIES IN HIT TRIAGE. JRNL REF ACS MED.CHEM.LETT. V. 11 266 2020 JRNL REFN ISSN 1948-5875 JRNL PMID 32184955 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00065 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 34396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1807 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2743 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2148 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2575 REMARK 3 BIN R VALUE (WORKING SET) : 0.2135 REMARK 3 BIN FREE R VALUE : 0.2359 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.12 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 168 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3987 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.82520 REMARK 3 B22 (A**2) : -9.85670 REMARK 3 B33 (A**2) : 6.03140 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.38300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.317 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.186 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.145 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.188 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.147 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4197 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5754 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1362 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 88 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 708 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4197 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 516 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4720 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.57 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.33 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 3.8685 6.8243 -25.0882 REMARK 3 T TENSOR REMARK 3 T11: -0.1138 T22: -0.1103 REMARK 3 T33: -0.1699 T12: 0.0072 REMARK 3 T13: -0.0179 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.3744 L22: 0.8876 REMARK 3 L33: 2.4637 L12: 0.6556 REMARK 3 L13: 0.3084 L23: -0.1341 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: 0.0193 S13: -0.0986 REMARK 3 S21: 0.0086 S22: -0.1894 S23: -0.0477 REMARK 3 S31: 0.0115 S32: -0.1523 S33: 0.1332 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 31.4665 8.0065 -15.1864 REMARK 3 T TENSOR REMARK 3 T11: -0.2803 T22: 0.0829 REMARK 3 T33: -0.1723 T12: -0.0340 REMARK 3 T13: -0.0747 T23: 0.1092 REMARK 3 L TENSOR REMARK 3 L11: 4.7343 L22: 1.8344 REMARK 3 L33: 2.3464 L12: 0.1993 REMARK 3 L13: -0.5094 L23: -0.1423 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: 0.0422 S13: -0.0340 REMARK 3 S21: 0.1436 S22: -0.0434 S23: -0.4775 REMARK 3 S31: -0.0134 S32: 0.6980 S33: 0.0985 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : ??? REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34398 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.32400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-22% W/V PEG3350, 10-15 MM L REMARK 280 -PROLINE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.38000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.38000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 TRP A 7 REMARK 465 PRO A 8 REMARK 465 THR A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 SER A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 THR A 166 REMARK 465 PHE A 167 REMARK 465 GLN A 168 REMARK 465 GLY A 169 REMARK 465 GLY A 170 REMARK 465 SER A 171 REMARK 465 GLN A 172 REMARK 465 SER A 173 REMARK 465 GLY A 174 REMARK 465 SER A 175 REMARK 465 GLY A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 SER A 179 REMARK 465 GLY A 180 REMARK 465 SER A 181 REMARK 465 ARG A 182 REMARK 465 ASP A 183 REMARK 465 SER A 184 REMARK 465 GLY A 185 REMARK 465 LYS A 230 REMARK 465 THR A 231 REMARK 465 SER A 232 REMARK 465 LEU A 233 REMARK 465 ILE A 234 REMARK 465 ARG A 235 REMARK 465 GLU A 236 REMARK 465 THR A 237 REMARK 465 VAL A 238 REMARK 465 CYS A 239 REMARK 465 ASP A 240 REMARK 465 ARG A 241 REMARK 465 GLN A 312 REMARK 465 HIS A 313 REMARK 465 LEU A 314 REMARK 465 GLU A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 TRP B 7 REMARK 465 PRO B 8 REMARK 465 THR B 9 REMARK 465 GLY B 10 REMARK 465 ALA B 11 REMARK 465 SER B 12 REMARK 465 GLY B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 THR B 166 REMARK 465 PHE B 167 REMARK 465 GLN B 168 REMARK 465 GLY B 169 REMARK 465 GLY B 170 REMARK 465 SER B 171 REMARK 465 GLN B 172 REMARK 465 SER B 173 REMARK 465 GLY B 174 REMARK 465 SER B 175 REMARK 465 GLY B 176 REMARK 465 SER B 177 REMARK 465 GLY B 178 REMARK 465 SER B 179 REMARK 465 GLY B 180 REMARK 465 SER B 181 REMARK 465 ARG B 182 REMARK 465 ASP B 183 REMARK 465 SER B 184 REMARK 465 GLY B 185 REMARK 465 GLY B 186 REMARK 465 THR B 187 REMARK 465 VAL B 228 REMARK 465 ASP B 229 REMARK 465 LYS B 230 REMARK 465 THR B 231 REMARK 465 SER B 232 REMARK 465 LEU B 233 REMARK 465 ILE B 234 REMARK 465 ARG B 235 REMARK 465 GLU B 236 REMARK 465 THR B 237 REMARK 465 VAL B 238 REMARK 465 CYS B 239 REMARK 465 ASP B 240 REMARK 465 GLN B 312 REMARK 465 HIS B 313 REMARK 465 LEU B 314 REMARK 465 GLU B 315 REMARK 465 HIS B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 465 HIS B 319 REMARK 465 HIS B 320 REMARK 465 HIS B 321 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 PHE A 197 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 LEU A 201 CG CD1 CD2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 ASP A 229 CG OD1 OD2 REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 HIS A 308 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 GLN B 108 CG CD OE1 NE2 REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 LEU B 191 CG CD1 CD2 REMARK 470 GLU B 194 CG CD OE1 OE2 REMARK 470 LEU B 195 CG CD1 CD2 REMARK 470 LEU B 196 CG CD1 CD2 REMARK 470 PHE B 197 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 VAL B 199 CG1 CG2 REMARK 470 ASN B 200 CG OD1 ND2 REMARK 470 LEU B 201 CG CD1 CD2 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 GLU B 226 CG CD OE1 OE2 REMARK 470 ARG B 241 CG CD NE CZ NH1 NH2 REMARK 470 THR B 248 OG1 CG2 REMARK 470 GLU B 261 CG CD OE1 OE2 REMARK 470 GLU B 265 CG CD OE1 OE2 REMARK 470 HIS B 269 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 273 OG REMARK 470 GLN B 274 CG CD OE1 NE2 REMARK 470 ASN B 277 CG OD1 ND2 REMARK 470 LYS B 287 CG CD CE NZ REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 ASP B 297 CG OD1 OD2 REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 HIS B 308 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 107 34.79 -95.78 REMARK 500 ARG A 142 -14.49 75.17 REMARK 500 LEU A 201 -44.77 66.62 REMARK 500 THR A 257 63.81 -119.27 REMARK 500 VAL B 14 122.71 62.33 REMARK 500 LEU B 107 34.34 -94.11 REMARK 500 ARG B 142 -15.43 75.17 REMARK 500 PRO B 193 -9.89 -57.20 REMARK 500 PHE B 197 -116.14 -145.43 REMARK 500 VAL B 199 -34.32 -148.13 REMARK 500 LYS B 202 122.49 86.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A4240 DISTANCE = 11.14 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1FN A 4000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1FN B 4000 DBREF 6OKO A 1 313 UNP Q9QZL0 RIPK3_MOUSE 1 313 DBREF 6OKO B 1 313 UNP Q9QZL0 RIPK3_MOUSE 1 313 SEQADV 6OKO ALA A 111 UNP Q9QZL0 CYS 111 CONFLICT SEQADV 6OKO ASP A 136 UNP Q9QZL0 ASN 136 CONFLICT SEQADV 6OKO LYS A 198 UNP Q9QZL0 ASP 198 CONFLICT SEQADV 6OKO LEU A 314 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO GLU A 315 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS A 316 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS A 317 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS A 318 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS A 319 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS A 320 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS A 321 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS A 322 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS A 323 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS A 324 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS A 325 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO ALA B 111 UNP Q9QZL0 CYS 111 CONFLICT SEQADV 6OKO ASP B 136 UNP Q9QZL0 ASN 136 CONFLICT SEQADV 6OKO LYS B 198 UNP Q9QZL0 ASP 198 CONFLICT SEQADV 6OKO LEU B 314 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO GLU B 315 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS B 316 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS B 317 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS B 318 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS B 319 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS B 320 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS B 321 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS B 322 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS B 323 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS B 324 UNP Q9QZL0 EXPRESSION TAG SEQADV 6OKO HIS B 325 UNP Q9QZL0 EXPRESSION TAG SEQRES 1 A 325 MET SER SER VAL LYS LEU TRP PRO THR GLY ALA SER ALA SEQRES 2 A 325 VAL PRO LEU VAL SER ARG GLU GLU LEU LYS LYS LEU GLU SEQRES 3 A 325 PHE VAL GLY LYS GLY GLY PHE GLY VAL VAL PHE ARG ALA SEQRES 4 A 325 HIS HIS ARG THR TRP ASN HIS ASP VAL ALA VAL LYS ILE SEQRES 5 A 325 VAL ASN SER LYS LYS ILE SER TRP GLU VAL LYS ALA MET SEQRES 6 A 325 VAL ASN LEU ARG ASN GLU ASN VAL LEU LEU LEU LEU GLY SEQRES 7 A 325 VAL THR GLU ASP LEU GLN TRP ASP PHE VAL SER GLY GLN SEQRES 8 A 325 ALA LEU VAL THR ARG PHE MET GLU ASN GLY SER LEU ALA SEQRES 9 A 325 GLY LEU LEU GLN PRO GLU ALA PRO ARG PRO TRP PRO LEU SEQRES 10 A 325 LEU CYS ARG LEU LEU GLN GLU VAL VAL LEU GLY MET CYS SEQRES 11 A 325 TYR LEU HIS SER LEU ASP PRO PRO LEU LEU HIS ARG ASP SEQRES 12 A 325 LEU LYS PRO SER ASN ILE LEU LEU ASP PRO GLU LEU HIS SEQRES 13 A 325 ALA LYS LEU ALA ASP PHE GLY LEU SER THR PHE GLN GLY SEQRES 14 A 325 GLY SER GLN SER GLY SER GLY SER GLY SER GLY SER ARG SEQRES 15 A 325 ASP SER GLY GLY THR LEU ALA TYR LEU ASP PRO GLU LEU SEQRES 16 A 325 LEU PHE LYS VAL ASN LEU LYS ALA SER LYS ALA SER ASP SEQRES 17 A 325 VAL TYR SER PHE GLY ILE LEU VAL TRP ALA VAL LEU ALA SEQRES 18 A 325 GLY ARG GLU ALA GLU LEU VAL ASP LYS THR SER LEU ILE SEQRES 19 A 325 ARG GLU THR VAL CYS ASP ARG GLN SER ARG PRO PRO LEU SEQRES 20 A 325 THR GLU LEU PRO PRO GLY SER PRO GLU THR PRO GLY LEU SEQRES 21 A 325 GLU LYS LEU LYS GLU LEU MET ILE HIS CYS TRP GLY SER SEQRES 22 A 325 GLN SER GLU ASN ARG PRO SER PHE GLN ASP CYS GLU PRO SEQRES 23 A 325 LYS THR ASN GLU VAL TYR ASN LEU VAL LYS ASP LYS VAL SEQRES 24 A 325 ASP ALA ALA VAL SER GLU VAL LYS HIS TYR LEU SER GLN SEQRES 25 A 325 HIS LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 325 MET SER SER VAL LYS LEU TRP PRO THR GLY ALA SER ALA SEQRES 2 B 325 VAL PRO LEU VAL SER ARG GLU GLU LEU LYS LYS LEU GLU SEQRES 3 B 325 PHE VAL GLY LYS GLY GLY PHE GLY VAL VAL PHE ARG ALA SEQRES 4 B 325 HIS HIS ARG THR TRP ASN HIS ASP VAL ALA VAL LYS ILE SEQRES 5 B 325 VAL ASN SER LYS LYS ILE SER TRP GLU VAL LYS ALA MET SEQRES 6 B 325 VAL ASN LEU ARG ASN GLU ASN VAL LEU LEU LEU LEU GLY SEQRES 7 B 325 VAL THR GLU ASP LEU GLN TRP ASP PHE VAL SER GLY GLN SEQRES 8 B 325 ALA LEU VAL THR ARG PHE MET GLU ASN GLY SER LEU ALA SEQRES 9 B 325 GLY LEU LEU GLN PRO GLU ALA PRO ARG PRO TRP PRO LEU SEQRES 10 B 325 LEU CYS ARG LEU LEU GLN GLU VAL VAL LEU GLY MET CYS SEQRES 11 B 325 TYR LEU HIS SER LEU ASP PRO PRO LEU LEU HIS ARG ASP SEQRES 12 B 325 LEU LYS PRO SER ASN ILE LEU LEU ASP PRO GLU LEU HIS SEQRES 13 B 325 ALA LYS LEU ALA ASP PHE GLY LEU SER THR PHE GLN GLY SEQRES 14 B 325 GLY SER GLN SER GLY SER GLY SER GLY SER GLY SER ARG SEQRES 15 B 325 ASP SER GLY GLY THR LEU ALA TYR LEU ASP PRO GLU LEU SEQRES 16 B 325 LEU PHE LYS VAL ASN LEU LYS ALA SER LYS ALA SER ASP SEQRES 17 B 325 VAL TYR SER PHE GLY ILE LEU VAL TRP ALA VAL LEU ALA SEQRES 18 B 325 GLY ARG GLU ALA GLU LEU VAL ASP LYS THR SER LEU ILE SEQRES 19 B 325 ARG GLU THR VAL CYS ASP ARG GLN SER ARG PRO PRO LEU SEQRES 20 B 325 THR GLU LEU PRO PRO GLY SER PRO GLU THR PRO GLY LEU SEQRES 21 B 325 GLU LYS LEU LYS GLU LEU MET ILE HIS CYS TRP GLY SER SEQRES 22 B 325 GLN SER GLU ASN ARG PRO SER PHE GLN ASP CYS GLU PRO SEQRES 23 B 325 LYS THR ASN GLU VAL TYR ASN LEU VAL LYS ASP LYS VAL SEQRES 24 B 325 ASP ALA ALA VAL SER GLU VAL LYS HIS TYR LEU SER GLN SEQRES 25 B 325 HIS LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS HET 1FN A4000 50 HET 1FN B4000 50 HETNAM 1FN 1-(4-FLUOROPHENYL)-N-[3-FLUORO-4-(1H-PYRROLO[2,3- HETNAM 2 1FN B]PYRIDIN-4-YLOXY)PHENYL]-2-OXO-1,2-DIHYDROPYRIDINE-3- HETNAM 3 1FN CARBOXAMIDE FORMUL 3 1FN 2(C25 H16 F2 N4 O3) FORMUL 5 HOH *202(H2 O) HELIX 1 AA1 SER A 18 GLU A 20 5 3 HELIX 2 AA2 LYS A 57 VAL A 66 1 10 HELIX 3 AA3 SER A 102 LEU A 107 5 6 HELIX 4 AA4 PRO A 114 SER A 134 1 21 HELIX 5 AA5 LYS A 145 SER A 147 5 3 HELIX 6 AA6 GLY A 186 LEU A 191 5 6 HELIX 7 AA7 ASP A 192 PHE A 197 1 6 HELIX 8 AA8 SER A 204 GLY A 222 1 19 HELIX 9 AA9 PRO A 246 LEU A 250 5 5 HELIX 10 AB1 GLY A 259 TRP A 271 1 13 HELIX 11 AB2 GLN A 274 ARG A 278 5 5 HELIX 12 AB3 SER A 280 LYS A 296 1 17 HELIX 13 AB4 LYS A 298 SER A 311 1 14 HELIX 14 AB5 SER B 18 GLU B 20 5 3 HELIX 15 AB6 LYS B 57 VAL B 66 1 10 HELIX 16 AB7 SER B 102 LEU B 107 5 6 HELIX 17 AB8 PRO B 114 SER B 134 1 21 HELIX 18 AB9 LYS B 145 SER B 147 5 3 HELIX 19 AC1 SER B 204 GLY B 222 1 19 HELIX 20 AC2 PRO B 246 LEU B 250 5 5 HELIX 21 AC3 GLY B 259 TRP B 271 1 13 HELIX 22 AC4 GLN B 274 ARG B 278 5 5 HELIX 23 AC5 SER B 280 LYS B 296 1 17 HELIX 24 AC6 LYS B 298 SER B 311 1 14 SHEET 1 AA1 6 LEU A 16 VAL A 17 0 SHEET 2 AA1 6 GLY A 78 THR A 80 1 O VAL A 79 N VAL A 17 SHEET 3 AA1 6 VAL A 88 ARG A 96 -1 O ALA A 92 N THR A 80 SHEET 4 AA1 6 HIS A 46 VAL A 53 -1 N LYS A 51 O LEU A 93 SHEET 5 AA1 6 VAL A 35 HIS A 41 -1 N ALA A 39 O VAL A 48 SHEET 6 AA1 6 LEU A 22 LYS A 30 -1 N GLU A 26 O ARG A 38 SHEET 1 AA2 4 LEU A 16 VAL A 17 0 SHEET 2 AA2 4 GLY A 78 THR A 80 1 O VAL A 79 N VAL A 17 SHEET 3 AA2 4 VAL A 88 ARG A 96 -1 O ALA A 92 N THR A 80 SHEET 4 AA2 4 LEU A 83 TRP A 85 -1 N LEU A 83 O GLY A 90 SHEET 1 AA3 2 ILE A 149 LEU A 151 0 SHEET 2 AA3 2 ALA A 157 LEU A 159 -1 O LYS A 158 N LEU A 150 SHEET 1 AA4 6 LEU B 16 VAL B 17 0 SHEET 2 AA4 6 GLY B 78 THR B 80 1 O VAL B 79 N VAL B 17 SHEET 3 AA4 6 VAL B 88 ARG B 96 -1 O ALA B 92 N THR B 80 SHEET 4 AA4 6 HIS B 46 VAL B 53 -1 N VAL B 53 O GLN B 91 SHEET 5 AA4 6 VAL B 35 HIS B 41 -1 N ALA B 39 O VAL B 48 SHEET 6 AA4 6 LEU B 22 GLY B 29 -1 N GLU B 26 O ARG B 38 SHEET 1 AA5 4 LEU B 16 VAL B 17 0 SHEET 2 AA5 4 GLY B 78 THR B 80 1 O VAL B 79 N VAL B 17 SHEET 3 AA5 4 VAL B 88 ARG B 96 -1 O ALA B 92 N THR B 80 SHEET 4 AA5 4 LEU B 83 TRP B 85 -1 N LEU B 83 O GLY B 90 SHEET 1 AA6 2 ILE B 149 LEU B 151 0 SHEET 2 AA6 2 ALA B 157 LEU B 159 -1 O LYS B 158 N LEU B 150 CISPEP 1 LYS A 30 GLY A 31 0 5.17 CISPEP 2 ASP A 136 PRO A 137 0 -0.07 CISPEP 3 GLY B 32 PHE B 33 0 0.14 CISPEP 4 ASP B 136 PRO B 137 0 0.09 SITE 1 AC1 16 VAL A 36 ALA A 49 LYS A 51 GLU A 61 SITE 2 AC1 16 MET A 65 THR A 95 ARG A 96 PHE A 97 SITE 3 AC1 16 MET A 98 LEU A 132 HIS A 141 LEU A 150 SITE 4 AC1 16 LEU A 159 ALA A 160 ASP A 161 PHE A 162 SITE 1 AC2 16 VAL B 36 ALA B 49 LYS B 51 GLU B 61 SITE 2 AC2 16 LEU B 68 THR B 95 ARG B 96 PHE B 97 SITE 3 AC2 16 MET B 98 LEU B 132 HIS B 141 LEU B 150 SITE 4 AC2 16 LEU B 159 ALA B 160 ASP B 161 PHE B 162 CRYST1 144.760 52.750 103.750 90.00 130.82 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006908 0.000000 0.005967 0.00000 SCALE2 0.000000 0.018957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012736 0.00000