HEADER OXIDOREDUCTASE 19-APR-19 6ON1 TITLE A RESTING STATE STRUCTURE OF L-DOPA DIOXYGENASE FROM STREPTOMYCES TITLE 2 SCLEROTIALUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-DOPA DIOXYGENASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SCLEROTIALUS; SOURCE 3 ORGANISM_TAXID: 1957; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EXTRADIOL DIOXYGENASE; VINCINAL OXYGEN CHELATE SUPERFAMILY., KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,I.SHIN,Y.FU,K.COLABROY,A.LIU REVDAT 5 03-APR-24 6ON1 1 REMARK REVDAT 4 13-MAR-24 6ON1 1 LINK REVDAT 3 08-JAN-20 6ON1 1 JRNL REVDAT 2 27-NOV-19 6ON1 1 REMARK REVDAT 1 26-JUN-19 6ON1 0 JRNL AUTH Y.WANG,I.SHIN,Y.FU,K.L.COLABROY,A.LIU JRNL TITL CRYSTAL STRUCTURES OF L-DOPA DIOXYGENASE FROMSTREPTOMYCES JRNL TITL 2 SCLEROTIALUS. JRNL REF BIOCHEMISTRY V. 58 5339 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31180203 JRNL DOI 10.1021/ACS.BIOCHEM.9B00396 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 76545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.610 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.3292 - 4.7732 0.96 5508 148 0.1897 0.2330 REMARK 3 2 4.7732 - 3.7904 0.96 5384 144 0.1725 0.2130 REMARK 3 3 3.7904 - 3.3117 0.96 5354 142 0.1950 0.2340 REMARK 3 4 3.3117 - 3.0091 0.99 5482 147 0.2191 0.2683 REMARK 3 5 3.0091 - 2.7936 0.97 5396 144 0.2205 0.2547 REMARK 3 6 2.7936 - 2.6289 0.97 5359 144 0.2235 0.2679 REMARK 3 7 2.6289 - 2.4973 0.99 5422 145 0.2244 0.2868 REMARK 3 8 2.4973 - 2.3887 0.99 5441 145 0.2312 0.3078 REMARK 3 9 2.3887 - 2.2967 0.98 5419 147 0.2311 0.3227 REMARK 3 10 2.2967 - 2.2175 0.96 5274 140 0.2309 0.2859 REMARK 3 11 2.2175 - 2.1482 0.98 5330 143 0.2330 0.2974 REMARK 3 12 2.1482 - 2.0868 0.96 5301 142 0.2496 0.3258 REMARK 3 13 2.0868 - 2.0318 0.94 5111 136 0.2743 0.3094 REMARK 3 14 2.0318 - 1.9823 0.87 4770 127 0.2868 0.3245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7399 REMARK 3 ANGLE : 0.769 10064 REMARK 3 CHIRALITY : 0.051 1060 REMARK 3 PLANARITY : 0.005 1317 REMARK 3 DIHEDRAL : 11.562 5140 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ON1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76745 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: SEMET-SUBSTITUTED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 0.2 M MGCL2, REMARK 280 16% PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.60750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 PRO A 11 REMARK 465 GLU A 12 REMARK 465 GLU A 160 REMARK 465 GLY A 161 REMARK 465 VAL A 162 REMARK 465 GLU A 163 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ARG B 3 REMARK 465 GLU B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 PRO B 7 REMARK 465 GLY B 8 REMARK 465 ALA B 9 REMARK 465 SER B 10 REMARK 465 PRO B 11 REMARK 465 GLU B 12 REMARK 465 ASP B 81 REMARK 465 ALA B 82 REMARK 465 GLY B 161 REMARK 465 VAL B 162 REMARK 465 GLU B 163 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ARG C 3 REMARK 465 GLU C 4 REMARK 465 ALA C 5 REMARK 465 SER C 6 REMARK 465 PRO C 7 REMARK 465 GLY C 8 REMARK 465 ALA C 9 REMARK 465 SER C 10 REMARK 465 PRO C 11 REMARK 465 GLU C 12 REMARK 465 GLU C 160 REMARK 465 GLY C 161 REMARK 465 VAL C 162 REMARK 465 GLU C 163 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ARG D 3 REMARK 465 GLU D 4 REMARK 465 ALA D 5 REMARK 465 SER D 6 REMARK 465 PRO D 7 REMARK 465 GLY D 8 REMARK 465 ALA D 9 REMARK 465 SER D 10 REMARK 465 PRO D 11 REMARK 465 GLU D 12 REMARK 465 ALA D 80 REMARK 465 ASP D 81 REMARK 465 ALA D 82 REMARK 465 THR D 83 REMARK 465 PRO D 84 REMARK 465 ALA D 85 REMARK 465 GLY D 161 REMARK 465 VAL D 162 REMARK 465 GLU D 163 REMARK 465 GLY E -1 REMARK 465 SER E 0 REMARK 465 MET E 1 REMARK 465 THR E 2 REMARK 465 ARG E 3 REMARK 465 GLU E 4 REMARK 465 ALA E 5 REMARK 465 SER E 6 REMARK 465 PRO E 7 REMARK 465 GLY E 8 REMARK 465 ALA E 9 REMARK 465 SER E 10 REMARK 465 PRO E 11 REMARK 465 GLU E 12 REMARK 465 ALA E 79 REMARK 465 ALA E 80 REMARK 465 ASP E 81 REMARK 465 ALA E 82 REMARK 465 THR E 83 REMARK 465 GLU E 160 REMARK 465 GLY E 161 REMARK 465 VAL E 162 REMARK 465 GLU E 163 REMARK 465 GLY F -1 REMARK 465 SER F 0 REMARK 465 MET F 1 REMARK 465 THR F 2 REMARK 465 ARG F 3 REMARK 465 GLU F 4 REMARK 465 ALA F 5 REMARK 465 SER F 6 REMARK 465 PRO F 7 REMARK 465 GLY F 8 REMARK 465 ALA F 9 REMARK 465 SER F 10 REMARK 465 PRO F 11 REMARK 465 GLU F 12 REMARK 465 HIS F 13 REMARK 465 ALA F 80 REMARK 465 ASP F 81 REMARK 465 ALA F 82 REMARK 465 THR F 83 REMARK 465 PRO F 84 REMARK 465 GLY F 161 REMARK 465 VAL F 162 REMARK 465 GLU F 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 345 O HOH D 365 2.10 REMARK 500 OE1 GLU A 137 O HOH A 301 2.11 REMARK 500 O HOH A 337 O HOH A 386 2.13 REMARK 500 O LYS E 48 O HOH E 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 78 -100.24 -111.05 REMARK 500 ALA B 85 116.08 70.28 REMARK 500 ALA C 79 85.67 53.17 REMARK 500 ASP C 81 -22.80 141.83 REMARK 500 THR C 83 108.11 -53.36 REMARK 500 ASP C 127 32.94 -92.81 REMARK 500 ARG D 78 -126.94 -114.73 REMARK 500 ASP E 26 86.71 -158.50 REMARK 500 ARG F 78 -113.22 -92.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 19 NE2 REMARK 620 2 HOH A 318 O 94.5 REMARK 620 3 HIS B 95 NE2 94.8 91.2 REMARK 620 4 GLU B 154 OE1 91.4 172.8 92.3 REMARK 620 5 HOH B 313 O 92.3 85.5 172.4 90.2 REMARK 620 6 HOH B 347 O 173.2 82.4 91.3 91.3 81.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 NE2 REMARK 620 2 GLU A 154 OE1 97.5 REMARK 620 3 HIS B 19 NE2 95.6 96.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 19 NE2 REMARK 620 2 HOH C 308 O 85.2 REMARK 620 3 HIS D 95 NE2 97.1 91.7 REMARK 620 4 GLU D 154 OE1 95.7 173.8 94.3 REMARK 620 5 HOH D 345 O 169.0 86.2 90.1 92.0 REMARK 620 6 HOH D 350 O 105.3 77.8 154.2 96.1 66.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 95 NE2 REMARK 620 2 GLU C 154 OE1 89.9 REMARK 620 3 HOH C 317 O 89.0 88.1 REMARK 620 4 HOH C 323 O 147.5 89.5 58.4 REMARK 620 5 HIS D 19 NE2 99.6 92.3 171.4 112.9 REMARK 620 6 HOH D 307 O 101.8 166.2 84.9 76.8 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE F 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 19 NE2 REMARK 620 2 HOH E 308 O 98.2 REMARK 620 3 HIS F 95 NE2 99.6 91.9 REMARK 620 4 GLU F 154 OE1 95.0 163.8 95.2 REMARK 620 5 HOH F 331 O 172.8 78.8 87.1 87.0 REMARK 620 6 HOH F 339 O 100.4 75.5 157.6 92.8 72.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE E 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 95 NE2 REMARK 620 2 GLU E 154 OE1 90.1 REMARK 620 3 HOH E 325 O 152.6 97.1 REMARK 620 4 HOH E 327 O 94.4 95.5 58.7 REMARK 620 5 HIS F 19 NE2 98.8 92.5 107.2 164.5 REMARK 620 6 HOH F 318 O 93.1 174.7 78.1 80.1 91.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE F 201 DBREF 6ON1 A -1 163 PDB 6ON1 6ON1 -1 163 DBREF 6ON1 B -1 163 PDB 6ON1 6ON1 -1 163 DBREF 6ON1 C -1 163 PDB 6ON1 6ON1 -1 163 DBREF 6ON1 D -1 163 PDB 6ON1 6ON1 -1 163 DBREF 6ON1 E -1 163 PDB 6ON1 6ON1 -1 163 DBREF 6ON1 F -1 163 PDB 6ON1 6ON1 -1 163 SEQRES 1 A 165 GLY SER MET THR ARG GLU ALA SER PRO GLY ALA SER PRO SEQRES 2 A 165 GLU HIS ALA PHE ARG PHE HIS HIS ILE GLY VAL GLN THR SEQRES 3 A 165 SER ASP LEU GLU ASN SER LEU GLY TRP TYR ARG GLU PHE SEQRES 4 A 165 PHE GLY CYS GLU GLN ASN TRP SER LEU GLU LYS PHE SER SEQRES 5 A 165 ASP LEU THR ARG SER ARG LEU PRO GLY ILE THR ARG LEU SEQRES 6 A 165 VAL GLU LEU ALA ALA GLY ASP LEU ARG ILE HIS VAL PHE SEQRES 7 A 165 GLU ARG ALA ALA ASP ALA THR PRO ALA PRO VAL ALA GLU SEQRES 8 A 165 VAL PRO GLN PHE GLN HIS LEU CYS LEU ALA THR ARG SER SEQRES 9 A 165 PRO GLU GLU MET THR GLU TRP ARG ASP ARG TRP LEU GLU SEQRES 10 A 165 LEU TYR GLU SER GLY ARG TYR THR PHE VAL ARG ASP GLU SEQRES 11 A 165 GLY PRO THR ASP ILE VAL VAL ASP GLU ASP GLY VAL LEU SEQRES 12 A 165 SER LEU TYR VAL LEU ASP VAL ASN GLY LEU GLU TYR GLU SEQRES 13 A 165 PHE THR TYR LEU PRO GLU GLY VAL GLU SEQRES 1 B 165 GLY SER MET THR ARG GLU ALA SER PRO GLY ALA SER PRO SEQRES 2 B 165 GLU HIS ALA PHE ARG PHE HIS HIS ILE GLY VAL GLN THR SEQRES 3 B 165 SER ASP LEU GLU ASN SER LEU GLY TRP TYR ARG GLU PHE SEQRES 4 B 165 PHE GLY CYS GLU GLN ASN TRP SER LEU GLU LYS PHE SER SEQRES 5 B 165 ASP LEU THR ARG SER ARG LEU PRO GLY ILE THR ARG LEU SEQRES 6 B 165 VAL GLU LEU ALA ALA GLY ASP LEU ARG ILE HIS VAL PHE SEQRES 7 B 165 GLU ARG ALA ALA ASP ALA THR PRO ALA PRO VAL ALA GLU SEQRES 8 B 165 VAL PRO GLN PHE GLN HIS LEU CYS LEU ALA THR ARG SER SEQRES 9 B 165 PRO GLU GLU MET THR GLU TRP ARG ASP ARG TRP LEU GLU SEQRES 10 B 165 LEU TYR GLU SER GLY ARG TYR THR PHE VAL ARG ASP GLU SEQRES 11 B 165 GLY PRO THR ASP ILE VAL VAL ASP GLU ASP GLY VAL LEU SEQRES 12 B 165 SER LEU TYR VAL LEU ASP VAL ASN GLY LEU GLU TYR GLU SEQRES 13 B 165 PHE THR TYR LEU PRO GLU GLY VAL GLU SEQRES 1 C 165 GLY SER MET THR ARG GLU ALA SER PRO GLY ALA SER PRO SEQRES 2 C 165 GLU HIS ALA PHE ARG PHE HIS HIS ILE GLY VAL GLN THR SEQRES 3 C 165 SER ASP LEU GLU ASN SER LEU GLY TRP TYR ARG GLU PHE SEQRES 4 C 165 PHE GLY CYS GLU GLN ASN TRP SER LEU GLU LYS PHE SER SEQRES 5 C 165 ASP LEU THR ARG SER ARG LEU PRO GLY ILE THR ARG LEU SEQRES 6 C 165 VAL GLU LEU ALA ALA GLY ASP LEU ARG ILE HIS VAL PHE SEQRES 7 C 165 GLU ARG ALA ALA ASP ALA THR PRO ALA PRO VAL ALA GLU SEQRES 8 C 165 VAL PRO GLN PHE GLN HIS LEU CYS LEU ALA THR ARG SER SEQRES 9 C 165 PRO GLU GLU MET THR GLU TRP ARG ASP ARG TRP LEU GLU SEQRES 10 C 165 LEU TYR GLU SER GLY ARG TYR THR PHE VAL ARG ASP GLU SEQRES 11 C 165 GLY PRO THR ASP ILE VAL VAL ASP GLU ASP GLY VAL LEU SEQRES 12 C 165 SER LEU TYR VAL LEU ASP VAL ASN GLY LEU GLU TYR GLU SEQRES 13 C 165 PHE THR TYR LEU PRO GLU GLY VAL GLU SEQRES 1 D 165 GLY SER MET THR ARG GLU ALA SER PRO GLY ALA SER PRO SEQRES 2 D 165 GLU HIS ALA PHE ARG PHE HIS HIS ILE GLY VAL GLN THR SEQRES 3 D 165 SER ASP LEU GLU ASN SER LEU GLY TRP TYR ARG GLU PHE SEQRES 4 D 165 PHE GLY CYS GLU GLN ASN TRP SER LEU GLU LYS PHE SER SEQRES 5 D 165 ASP LEU THR ARG SER ARG LEU PRO GLY ILE THR ARG LEU SEQRES 6 D 165 VAL GLU LEU ALA ALA GLY ASP LEU ARG ILE HIS VAL PHE SEQRES 7 D 165 GLU ARG ALA ALA ASP ALA THR PRO ALA PRO VAL ALA GLU SEQRES 8 D 165 VAL PRO GLN PHE GLN HIS LEU CYS LEU ALA THR ARG SER SEQRES 9 D 165 PRO GLU GLU MET THR GLU TRP ARG ASP ARG TRP LEU GLU SEQRES 10 D 165 LEU TYR GLU SER GLY ARG TYR THR PHE VAL ARG ASP GLU SEQRES 11 D 165 GLY PRO THR ASP ILE VAL VAL ASP GLU ASP GLY VAL LEU SEQRES 12 D 165 SER LEU TYR VAL LEU ASP VAL ASN GLY LEU GLU TYR GLU SEQRES 13 D 165 PHE THR TYR LEU PRO GLU GLY VAL GLU SEQRES 1 E 165 GLY SER MET THR ARG GLU ALA SER PRO GLY ALA SER PRO SEQRES 2 E 165 GLU HIS ALA PHE ARG PHE HIS HIS ILE GLY VAL GLN THR SEQRES 3 E 165 SER ASP LEU GLU ASN SER LEU GLY TRP TYR ARG GLU PHE SEQRES 4 E 165 PHE GLY CYS GLU GLN ASN TRP SER LEU GLU LYS PHE SER SEQRES 5 E 165 ASP LEU THR ARG SER ARG LEU PRO GLY ILE THR ARG LEU SEQRES 6 E 165 VAL GLU LEU ALA ALA GLY ASP LEU ARG ILE HIS VAL PHE SEQRES 7 E 165 GLU ARG ALA ALA ASP ALA THR PRO ALA PRO VAL ALA GLU SEQRES 8 E 165 VAL PRO GLN PHE GLN HIS LEU CYS LEU ALA THR ARG SER SEQRES 9 E 165 PRO GLU GLU MET THR GLU TRP ARG ASP ARG TRP LEU GLU SEQRES 10 E 165 LEU TYR GLU SER GLY ARG TYR THR PHE VAL ARG ASP GLU SEQRES 11 E 165 GLY PRO THR ASP ILE VAL VAL ASP GLU ASP GLY VAL LEU SEQRES 12 E 165 SER LEU TYR VAL LEU ASP VAL ASN GLY LEU GLU TYR GLU SEQRES 13 E 165 PHE THR TYR LEU PRO GLU GLY VAL GLU SEQRES 1 F 165 GLY SER MET THR ARG GLU ALA SER PRO GLY ALA SER PRO SEQRES 2 F 165 GLU HIS ALA PHE ARG PHE HIS HIS ILE GLY VAL GLN THR SEQRES 3 F 165 SER ASP LEU GLU ASN SER LEU GLY TRP TYR ARG GLU PHE SEQRES 4 F 165 PHE GLY CYS GLU GLN ASN TRP SER LEU GLU LYS PHE SER SEQRES 5 F 165 ASP LEU THR ARG SER ARG LEU PRO GLY ILE THR ARG LEU SEQRES 6 F 165 VAL GLU LEU ALA ALA GLY ASP LEU ARG ILE HIS VAL PHE SEQRES 7 F 165 GLU ARG ALA ALA ASP ALA THR PRO ALA PRO VAL ALA GLU SEQRES 8 F 165 VAL PRO GLN PHE GLN HIS LEU CYS LEU ALA THR ARG SER SEQRES 9 F 165 PRO GLU GLU MET THR GLU TRP ARG ASP ARG TRP LEU GLU SEQRES 10 F 165 LEU TYR GLU SER GLY ARG TYR THR PHE VAL ARG ASP GLU SEQRES 11 F 165 GLY PRO THR ASP ILE VAL VAL ASP GLU ASP GLY VAL LEU SEQRES 12 F 165 SER LEU TYR VAL LEU ASP VAL ASN GLY LEU GLU TYR GLU SEQRES 13 F 165 PHE THR TYR LEU PRO GLU GLY VAL GLU HET FE A 201 1 HET FE B 201 1 HET FE C 201 1 HET FE D 201 1 HET TRS D 202 8 HET FE E 201 1 HET FE F 201 1 HETNAM FE FE (III) ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 7 FE 6(FE 3+) FORMUL 11 TRS C4 H12 N O3 1+ FORMUL 14 HOH *368(H2 O) HELIX 1 AA1 ASP A 26 GLY A 39 1 14 HELIX 2 AA2 SER A 50 LEU A 57 1 8 HELIX 3 AA3 SER A 102 SER A 119 1 18 HELIX 4 AA4 ASP B 26 GLY B 39 1 14 HELIX 5 AA5 SER B 50 LEU B 57 1 8 HELIX 6 AA6 SER B 102 GLY B 120 1 19 HELIX 7 AA7 ASP C 26 GLY C 39 1 14 HELIX 8 AA8 SER C 50 LEU C 57 1 8 HELIX 9 AA9 SER C 102 GLU C 118 1 17 HELIX 10 AB1 ASP D 26 GLY D 39 1 14 HELIX 11 AB2 SER D 50 LEU D 57 1 8 HELIX 12 AB3 SER D 102 SER D 119 1 18 HELIX 13 AB4 ASP E 26 GLY E 39 1 14 HELIX 14 AB5 SER E 50 LEU E 57 1 8 HELIX 15 AB6 SER E 102 SER E 119 1 18 HELIX 16 AB7 ASP F 26 GLY F 39 1 14 HELIX 17 AB8 SER F 50 LEU F 57 1 8 HELIX 18 AB9 SER F 102 SER F 119 1 18 SHEET 1 AA116 GLU A 41 LEU A 46 0 SHEET 2 AA116 ILE A 60 ALA A 68 -1 O GLU A 65 N ASN A 43 SHEET 3 AA116 LEU A 71 ARG A 78 -1 O ILE A 73 N LEU A 66 SHEET 4 AA116 ARG A 16 THR A 24 1 N VAL A 22 O HIS A 74 SHEET 5 AA116 GLN B 92 ALA B 99 -1 O ALA B 99 N ARG A 16 SHEET 6 AA116 GLU B 152 TYR B 157 1 O GLU B 154 N LEU B 98 SHEET 7 AA116 LEU B 141 LEU B 146 -1 N LEU B 143 O PHE B 155 SHEET 8 AA116 ILE B 133 VAL B 135 -1 N VAL B 134 O SER B 142 SHEET 9 AA116 ILE F 133 VAL F 135 -1 O ILE F 133 N VAL B 135 SHEET 10 AA116 LEU F 141 LEU F 146 -1 O SER F 142 N VAL F 134 SHEET 11 AA116 GLU F 152 TYR F 157 -1 O PHE F 155 N LEU F 143 SHEET 12 AA116 GLN F 92 ALA F 99 1 N LEU F 98 O GLU F 154 SHEET 13 AA116 ARG E 16 GLN E 23 -1 N ARG E 16 O ALA F 99 SHEET 14 AA116 LEU E 71 GLU E 77 1 O HIS E 74 N VAL E 22 SHEET 15 AA116 ARG E 62 ALA E 68 -1 N LEU E 66 O ILE E 73 SHEET 16 AA116 GLU E 41 LEU E 46 -1 N GLU E 41 O ALA E 67 SHEET 1 AA2 8 VAL A 134 VAL A 135 0 SHEET 2 AA2 8 LEU A 141 LEU A 146 -1 O SER A 142 N VAL A 134 SHEET 3 AA2 8 GLU A 152 TYR A 157 -1 O PHE A 155 N LEU A 143 SHEET 4 AA2 8 GLN A 92 ALA A 99 1 N LEU A 98 O GLU A 154 SHEET 5 AA2 8 ARG B 16 THR B 24 -1 O ARG B 16 N ALA A 99 SHEET 6 AA2 8 LEU B 71 GLU B 77 1 O HIS B 74 N ILE B 20 SHEET 7 AA2 8 ARG B 62 ALA B 68 -1 N LEU B 66 O ILE B 73 SHEET 8 AA2 8 GLU B 41 LEU B 46 -1 N LEU B 46 O LEU B 63 SHEET 1 AA3 8 GLU C 41 LEU C 46 0 SHEET 2 AA3 8 ARG C 62 ALA C 68 -1 O ALA C 67 N GLU C 41 SHEET 3 AA3 8 LEU C 71 GLU C 77 -1 O ILE C 73 N LEU C 66 SHEET 4 AA3 8 ARG C 16 THR C 24 1 N VAL C 22 O HIS C 74 SHEET 5 AA3 8 GLN D 92 ALA D 99 -1 O ALA D 99 N ARG C 16 SHEET 6 AA3 8 GLU D 152 TYR D 157 1 O GLU D 154 N LEU D 98 SHEET 7 AA3 8 LEU D 141 LEU D 146 -1 N LEU D 143 O PHE D 155 SHEET 8 AA3 8 VAL D 134 VAL D 135 -1 N VAL D 134 O SER D 142 SHEET 1 AA4 8 VAL C 134 VAL C 135 0 SHEET 2 AA4 8 LEU C 141 LEU C 146 -1 O SER C 142 N VAL C 134 SHEET 3 AA4 8 GLU C 152 TYR C 157 -1 O PHE C 155 N LEU C 143 SHEET 4 AA4 8 GLN C 92 ALA C 99 1 N LEU C 98 O GLU C 154 SHEET 5 AA4 8 ARG D 16 THR D 24 -1 O ARG D 16 N ALA C 99 SHEET 6 AA4 8 LEU D 71 GLU D 77 1 O HIS D 74 N VAL D 22 SHEET 7 AA4 8 ARG D 62 ALA D 68 -1 N LEU D 66 O ILE D 73 SHEET 8 AA4 8 GLU D 41 LEU D 46 -1 N ASN D 43 O GLU D 65 SHEET 1 AA5 8 VAL E 134 VAL E 135 0 SHEET 2 AA5 8 LEU E 141 LEU E 146 -1 O SER E 142 N VAL E 134 SHEET 3 AA5 8 GLU E 152 TYR E 157 -1 O PHE E 155 N LEU E 143 SHEET 4 AA5 8 GLN E 92 ALA E 99 1 N LEU E 98 O GLU E 154 SHEET 5 AA5 8 ARG F 16 THR F 24 -1 O ARG F 16 N ALA E 99 SHEET 6 AA5 8 LEU F 71 GLU F 77 1 O HIS F 74 N VAL F 22 SHEET 7 AA5 8 ARG F 62 ALA F 68 -1 N LEU F 66 O ILE F 73 SHEET 8 AA5 8 GLU F 41 LEU F 46 -1 N ASN F 43 O GLU F 65 LINK NE2 HIS A 19 FE FE B 201 1555 1555 2.13 LINK NE2 HIS A 95 FE FE A 201 1555 1555 2.03 LINK OE1 GLU A 154 FE FE A 201 1555 1555 1.98 LINK FE FE A 201 NE2 HIS B 19 1555 1555 2.16 LINK O HOH A 318 FE FE B 201 1555 1555 2.11 LINK NE2 HIS B 95 FE FE B 201 1555 1555 2.10 LINK OE1 GLU B 154 FE FE B 201 1555 1555 2.01 LINK FE FE B 201 O HOH B 313 1555 1555 2.26 LINK FE FE B 201 O HOH B 347 1555 1555 2.29 LINK NE2 HIS C 19 FE FE D 201 1555 1555 2.07 LINK NE2 HIS C 95 FE FE C 201 1555 1555 2.11 LINK OE1 GLU C 154 FE FE C 201 1555 1555 2.09 LINK FE FE C 201 O HOH C 317 1555 1555 2.51 LINK FE FE C 201 O HOH C 323 1555 1555 2.27 LINK FE FE C 201 NE2 HIS D 19 1555 1555 2.11 LINK FE FE C 201 O HOH D 307 1555 1555 2.09 LINK O HOH C 308 FE FE D 201 1555 1555 2.00 LINK NE2 HIS D 95 FE FE D 201 1555 1555 2.22 LINK OE1 GLU D 154 FE FE D 201 1555 1555 2.03 LINK FE FE D 201 O HOH D 345 1555 1555 2.39 LINK FE FE D 201 O HOH D 350 1555 1555 2.28 LINK NE2 HIS E 19 FE FE F 201 1555 1555 2.06 LINK NE2 HIS E 95 FE FE E 201 1555 1555 2.15 LINK OE1 GLU E 154 FE FE E 201 1555 1555 2.05 LINK FE FE E 201 O HOH E 325 1555 1555 2.30 LINK FE FE E 201 O HOH E 327 1555 1555 2.37 LINK FE FE E 201 NE2 HIS F 19 1555 1555 2.12 LINK FE FE E 201 O HOH F 318 1555 1555 2.00 LINK O HOH E 308 FE FE F 201 1555 1555 2.06 LINK NE2 HIS F 95 FE FE F 201 1555 1555 2.13 LINK OE1 GLU F 154 FE FE F 201 1555 1555 2.07 LINK FE FE F 201 O HOH F 331 1555 1555 2.36 LINK FE FE F 201 O HOH F 339 1555 1555 2.49 SITE 1 AC1 3 HIS A 95 GLU A 154 HIS B 19 SITE 1 AC2 6 HIS A 19 HOH A 318 HIS B 95 GLU B 154 SITE 2 AC2 6 HOH B 313 HOH B 347 SITE 1 AC3 6 HIS C 95 GLU C 154 HOH C 317 HOH C 323 SITE 2 AC3 6 HIS D 19 HOH D 307 SITE 1 AC4 6 HIS C 19 HOH C 308 HIS D 95 GLU D 154 SITE 2 AC4 6 HOH D 345 HOH D 350 SITE 1 AC5 6 ASP B 26 ASN B 29 THR B 123 ASP D 26 SITE 2 AC5 6 GLU D 28 HOH D 357 SITE 1 AC6 6 HIS E 95 GLU E 154 HOH E 325 HOH E 327 SITE 2 AC6 6 HIS F 19 HOH F 318 SITE 1 AC7 6 HIS E 19 HOH E 308 HIS F 95 GLU F 154 SITE 2 AC7 6 HOH F 331 HOH F 339 CRYST1 99.977 45.215 131.153 90.00 105.20 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010002 0.000000 0.002717 0.00000 SCALE2 0.000000 0.022117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007901 0.00000