HEADER LYASE 22-APR-19 6ONM TITLE CRYSTAL STRUCTURE OF (+)-LIMONENE SYNTHASE COMPLEXED WITH 8,9- TITLE 2 DIFLUOROLINALYL DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: (+)-LIMONENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.3.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CITRUS SINENSIS; SOURCE 3 ORGANISM_COMMON: SWEET ORANGE; SOURCE 4 ORGANISM_TAXID: 2711; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: BL21-CODONPLUS(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TERPENE SYNTHASE, ENANTIOMER, TERPENE SYNTHASE FOLD, MONOTERPENE, KEYWDS 2 FLUORO ANALOG, METAL BINDING, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.PREM KUMAR,B.R.MOREHOUSE,Q.YU,D.D.OPRIAN REVDAT 4 11-OCT-23 6ONM 1 LINK REVDAT 3 02-OCT-19 6ONM 1 JRNL REVDAT 2 18-SEP-19 6ONM 1 JRNL REVDAT 1 04-SEP-19 6ONM 0 JRNL AUTH B.R.MOREHOUSE,R.P.KUMAR,J.O.MATOS,Q.YU,A.BANNISTER,K.MALIK, JRNL AUTH 2 J.S.TEMME,I.J.KRAUSS,D.D.OPRIAN JRNL TITL DIRECT EVIDENCE OF AN ENZYME-GENERATED LPP INTERMEDIATE IN JRNL TITL 2 (+)-LIMONENE SYNTHASE USING A FLUORINATED GPP SUBSTRATE JRNL TITL 3 ANALOG. JRNL REF ACS CHEM.BIOL. V. 14 2035 2019 JRNL REFN ESSN 1554-8937 JRNL PMID 31433159 JRNL DOI 10.1021/ACSCHEMBIO.9B00514 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13RC1_2954 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 1212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9576 - 5.5798 1.00 2608 147 0.1708 0.1774 REMARK 3 2 5.5798 - 4.4449 1.00 2474 135 0.1742 0.2434 REMARK 3 3 4.4449 - 3.8878 0.99 2421 139 0.1781 0.1895 REMARK 3 4 3.8878 - 3.5344 1.00 2400 154 0.2134 0.2617 REMARK 3 5 3.5344 - 3.2823 1.00 2387 143 0.2359 0.2833 REMARK 3 6 3.2823 - 3.0895 1.00 2393 129 0.2828 0.3418 REMARK 3 7 3.0895 - 2.9353 1.00 2395 125 0.2918 0.3067 REMARK 3 8 2.9353 - 2.8079 1.00 2383 120 0.2945 0.3124 REMARK 3 9 2.8079 - 2.7001 1.00 2374 120 0.3276 0.4121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ONM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 26.70 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.80 REMARK 200 R MERGE FOR SHELL (I) : 1.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5UV0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG8000, 100 MM TRIS PH 7.5, 350 REMARK 280 MM SODIUM TARTRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.81000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.90500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.40500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.90500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 163.21500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.90500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.90500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.40500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.90500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.90500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 163.21500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 CYS A 4 REMARK 465 ILE A 5 REMARK 465 ASN A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 VAL A 14 REMARK 465 ASN A 15 REMARK 465 GLY A 16 REMARK 465 PHE A 17 REMARK 465 LYS A 18 REMARK 465 CYS A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 LEU A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 ARG A 26 REMARK 465 ALA A 27 REMARK 465 ALA A 28 REMARK 465 ILE A 29 REMARK 465 ARG A 30 REMARK 465 ILE A 31 REMARK 465 MET A 32 REMARK 465 ALA A 33 REMARK 465 LYS A 34 REMARK 465 ASN A 35 REMARK 465 LYS A 36 REMARK 465 PRO A 37 REMARK 465 VAL A 38 REMARK 465 GLN A 39 REMARK 465 CYS A 40 REMARK 465 LEU A 41 REMARK 465 VAL A 42 REMARK 465 SER A 43 REMARK 465 THR A 44 REMARK 465 LYS A 45 REMARK 465 TYR A 46 REMARK 465 ASP A 47 REMARK 465 ASN A 48 REMARK 465 LEU A 49 REMARK 465 THR A 50 REMARK 465 VAL A 51 REMARK 465 ASP A 52 REMARK 465 ARG A 53 REMARK 465 ARG A 54 REMARK 465 SER A 55 REMARK 465 ALA A 56 REMARK 465 ASN A 57 REMARK 465 TYR A 58 REMARK 465 GLN A 59 REMARK 465 PRO A 60 REMARK 465 LYS A 136 REMARK 465 ASP A 137 REMARK 465 TYR A 138 REMARK 465 ASN A 139 REMARK 465 TRP A 140 REMARK 465 ARG A 141 REMARK 465 MET A 217 REMARK 465 ILE A 218 REMARK 465 THR A 219 REMARK 465 SER A 220 REMARK 465 ASN A 221 REMARK 465 SER A 222 REMARK 465 LYS A 223 REMARK 465 GLU A 224 REMARK 465 GLU A 225 REMARK 465 SER A 493 REMARK 465 SER A 494 REMARK 465 ASP A 495 REMARK 465 GLU A 496 REMARK 465 ILE A 497 REMARK 465 GLN A 498 REMARK 465 ARG A 499 REMARK 465 GLY A 500 REMARK 465 ASP A 501 REMARK 465 ASP A 569 REMARK 465 GLY A 570 REMARK 465 HIS A 571 REMARK 465 GLY A 572 REMARK 465 VAL A 573 REMARK 465 GLN A 574 REMARK 465 ASN A 575 REMARK 465 GLN A 576 REMARK 465 GLU A 577 REMARK 465 THR A 578 REMARK 465 ILE A 579 REMARK 465 GLU A 593 REMARK 465 ASP A 594 REMARK 465 LYS A 595 REMARK 465 ASP A 596 REMARK 465 MET A 597 REMARK 465 ALA A 598 REMARK 465 PHE A 599 REMARK 465 THR A 600 REMARK 465 ALA A 601 REMARK 465 SER A 602 REMARK 465 PRO A 603 REMARK 465 GLY A 604 REMARK 465 THR A 605 REMARK 465 LYS A 606 REMARK 465 GLY A 607 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 135 CG OD1 ND2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 308 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 72 75.14 -151.19 REMARK 500 PHE A 325 30.15 -93.64 REMARK 500 VAL A 348 -69.37 -140.78 REMARK 500 LYS A 504 -166.46 -111.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 343 OD2 REMARK 620 2 ASP A 347 OD2 73.2 REMARK 620 3 MWG A 704 O2A 77.1 149.4 REMARK 620 4 MWG A 704 O2B 86.6 81.9 89.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 702 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 343 OD1 REMARK 620 2 ASP A 347 OD2 75.0 REMARK 620 3 MWG A 704 O2B 79.0 76.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 703 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 488 OD2 REMARK 620 2 MWG A 704 O3B 96.7 REMARK 620 3 MWG A 704 O1A 104.7 70.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MWG A 704 DBREF1 6ONM A 1 607 UNP A0A1C9J6A7_CITSI DBREF2 6ONM A A0A1C9J6A7 1 607 SEQADV 6ONM ALA A 245 UNP A0A1C9J6A VAL 245 CONFLICT SEQRES 1 A 607 MET SER SER CYS ILE ASN PRO SER THR LEU ALA THR SER SEQRES 2 A 607 VAL ASN GLY PHE LYS CYS LEU PRO LEU ALA THR ASN ARG SEQRES 3 A 607 ALA ALA ILE ARG ILE MET ALA LYS ASN LYS PRO VAL GLN SEQRES 4 A 607 CYS LEU VAL SER THR LYS TYR ASP ASN LEU THR VAL ASP SEQRES 5 A 607 ARG ARG SER ALA ASN TYR GLN PRO SER ILE TRP ASP HIS SEQRES 6 A 607 ASP PHE LEU GLN SER LEU ASN SER ASN TYR THR ASP GLU SEQRES 7 A 607 THR TYR LYS ARG ARG ALA GLU GLU LEU LYS GLY LYS VAL SEQRES 8 A 607 LYS THR ALA ILE LYS ASP VAL THR GLU PRO LEU ASP GLN SEQRES 9 A 607 LEU GLU LEU ILE ASP ASN LEU GLN ARG LEU GLY LEU ALA SEQRES 10 A 607 TYR HIS PHE GLU PRO GLU ILE ARG ASN ILE LEU ARG ASN SEQRES 11 A 607 ILE HIS ASN HIS ASN LYS ASP TYR ASN TRP ARG LYS GLU SEQRES 12 A 607 ASN LEU TYR ALA THR SER LEU GLU PHE ARG LEU LEU ARG SEQRES 13 A 607 GLN HIS GLY TYR PRO VAL SER GLN GLU VAL PHE SER GLY SEQRES 14 A 607 PHE LYS ASP ASP LYS VAL GLY PHE ILE CYS ASP ASP PHE SEQRES 15 A 607 LYS GLY ILE LEU SER LEU HIS GLU ALA SER TYR TYR SER SEQRES 16 A 607 LEU GLU GLY GLU SER ILE MET GLU GLU ALA TRP GLN PHE SEQRES 17 A 607 THR SER LYS HIS LEU LYS GLU MET MET ILE THR SER ASN SEQRES 18 A 607 SER LYS GLU GLU ASP VAL PHE VAL ALA GLU GLN ALA LYS SEQRES 19 A 607 ARG ALA LEU GLU LEU PRO LEU HIS TRP LYS ALA PRO MET SEQRES 20 A 607 LEU GLU ALA ARG TRP PHE ILE HIS VAL TYR GLU LYS ARG SEQRES 21 A 607 GLU ASP LYS ASN HIS LEU LEU LEU GLU LEU ALA LYS LEU SEQRES 22 A 607 GLU PHE ASN THR LEU GLN ALA ILE TYR GLN GLU GLU LEU SEQRES 23 A 607 LYS ASP ILE SER GLY TRP TRP LYS ASP THR GLY LEU GLY SEQRES 24 A 607 GLU LYS LEU SER PHE ALA ARG ASN ARG LEU VAL ALA SER SEQRES 25 A 607 PHE LEU TRP SER MET GLY ILE ALA PHE GLU PRO GLN PHE SEQRES 26 A 607 ALA TYR CYS ARG ARG VAL LEU THR ILE SER ILE ALA LEU SEQRES 27 A 607 ILE THR VAL ILE ASP ASP ILE TYR ASP VAL TYR GLY THR SEQRES 28 A 607 LEU ASP GLU LEU GLU ILE PHE THR ASP ALA VAL ALA ARG SEQRES 29 A 607 TRP ASP ILE ASN TYR ALA LEU LYS HIS LEU PRO GLY TYR SEQRES 30 A 607 MET LYS MET CYS PHE LEU ALA LEU TYR ASN PHE VAL ASN SEQRES 31 A 607 GLU PHE ALA TYR TYR VAL LEU LYS GLN GLN ASP PHE ASP SEQRES 32 A 607 MET LEU LEU SER ILE LYS HIS ALA TRP LEU GLY LEU ILE SEQRES 33 A 607 GLN ALA TYR LEU VAL GLU ALA LYS TRP TYR HIS SER LYS SEQRES 34 A 607 TYR THR PRO LYS LEU GLU GLU TYR LEU GLU ASN GLY LEU SEQRES 35 A 607 VAL SER ILE THR GLY PRO LEU ILE ILE THR ILE SER TYR SEQRES 36 A 607 LEU SER GLY THR ASN PRO ILE ILE LYS LYS GLU LEU GLU SEQRES 37 A 607 PHE LEU GLU SER ASN PRO ASP ILE VAL HIS TRP SER SER SEQRES 38 A 607 LYS ILE PHE ARG LEU GLN ASP ASP LEU GLY THR SER SER SEQRES 39 A 607 ASP GLU ILE GLN ARG GLY ASP VAL PRO LYS SER ILE GLN SEQRES 40 A 607 CYS TYR MET HIS GLU THR GLY ALA SER GLU GLU VAL ALA SEQRES 41 A 607 ARG GLU HIS ILE LYS ASP MET MET ARG GLN MET TRP LYS SEQRES 42 A 607 LYS VAL ASN ALA TYR THR ALA ASP LYS ASP SER PRO LEU SEQRES 43 A 607 THR ARG THR THR ALA GLU PHE LEU LEU ASN LEU VAL ARG SEQRES 44 A 607 MET SER HIS PHE MET TYR LEU HIS GLY ASP GLY HIS GLY SEQRES 45 A 607 VAL GLN ASN GLN GLU THR ILE ASP VAL GLY PHE THR LEU SEQRES 46 A 607 LEU PHE GLN PRO ILE PRO LEU GLU ASP LYS ASP MET ALA SEQRES 47 A 607 PHE THR ALA SER PRO GLY THR LYS GLY HET MN A 701 1 HET MN A 702 1 HET MN A 703 1 HET MWG A 704 21 HETNAM MN MANGANESE (II) ION HETNAM MWG (3R)-8-FLUORO-7-(FLUOROMETHYL)-3-METHYLOCTA-1,6-DIEN-3- HETNAM 2 MWG YL TRIHYDROGEN DIPHOSPHATE FORMUL 2 MN 3(MN 2+) FORMUL 5 MWG C10 H18 F2 O7 P2 FORMUL 6 HOH *23(H2 O) HELIX 1 AA1 ASP A 64 LEU A 71 1 8 HELIX 2 AA2 SER A 73 THR A 76 5 4 HELIX 3 AA3 ASP A 77 ASP A 97 1 21 HELIX 4 AA4 GLU A 100 LEU A 114 1 15 HELIX 5 AA5 LEU A 116 HIS A 119 5 4 HELIX 6 AA6 PHE A 120 ASN A 135 1 16 HELIX 7 AA7 ASN A 144 HIS A 158 1 15 HELIX 8 AA8 SER A 163 GLY A 169 5 7 HELIX 9 AA9 ASP A 181 TYR A 193 1 13 HELIX 10 AB1 GLU A 199 MET A 216 1 18 HELIX 11 AB2 VAL A 227 LEU A 239 1 13 HELIX 12 AB3 PRO A 240 LYS A 244 5 5 HELIX 13 AB4 PRO A 246 LEU A 248 5 3 HELIX 14 AB5 GLU A 249 ARG A 260 1 12 HELIX 15 AB6 ASN A 264 GLY A 297 1 34 HELIX 16 AB7 GLY A 297 LEU A 302 1 6 HELIX 17 AB8 ARG A 308 ALA A 320 1 13 HELIX 18 AB9 GLU A 322 GLN A 324 5 3 HELIX 19 AC1 PHE A 325 VAL A 348 1 24 HELIX 20 AC2 THR A 351 TRP A 365 1 15 HELIX 21 AC3 ASP A 366 LEU A 374 1 9 HELIX 22 AC4 PRO A 375 ASP A 401 1 27 HELIX 23 AC5 MET A 404 LYS A 429 1 26 HELIX 24 AC6 LYS A 433 ILE A 445 1 13 HELIX 25 AC7 THR A 446 THR A 459 1 14 HELIX 26 AC8 ILE A 463 SER A 472 1 10 HELIX 27 AC9 PRO A 474 GLY A 491 1 18 HELIX 28 AD1 LYS A 504 GLY A 514 1 11 HELIX 29 AD2 SER A 516 ASP A 541 1 26 HELIX 30 AD3 THR A 547 HIS A 567 1 21 HELIX 31 AD4 VAL A 581 GLN A 588 1 8 SHEET 1 AA1 2 LYS A 171 ASP A 172 0 SHEET 2 AA1 2 GLY A 176 PHE A 177 -1 O GLY A 176 N ASP A 172 LINK OD2 ASP A 343 MN MN A 701 1555 1555 2.31 LINK OD1 ASP A 343 MN MN A 702 1555 1555 2.38 LINK OD2 ASP A 347 MN MN A 701 1555 1555 2.57 LINK OD2 ASP A 347 MN MN A 702 1555 1555 2.26 LINK OD2 ASP A 488 MN MN A 703 1555 1555 1.95 LINK MN MN A 701 O2A MWG A 704 1555 1555 2.62 LINK MN MN A 701 O2B MWG A 704 1555 1555 2.04 LINK MN MN A 702 O2B MWG A 704 1555 1555 2.63 LINK MN MN A 703 O3B MWG A 704 1555 1555 2.48 LINK MN MN A 703 O1A MWG A 704 1555 1555 2.09 CISPEP 1 ASN A 460 PRO A 461 0 5.69 SITE 1 AC1 4 ASP A 343 ASP A 347 MN A 702 MWG A 704 SITE 1 AC2 5 ASP A 343 ASP A 347 GLU A 422 MN A 701 SITE 2 AC2 5 MWG A 704 SITE 1 AC3 2 ASP A 488 MWG A 704 SITE 1 AC4 10 TRP A 315 ASP A 343 ASP A 347 THR A 446 SITE 2 AC4 10 ARG A 485 ASP A 488 LYS A 504 MN A 701 SITE 3 AC4 10 MN A 702 MN A 703 CRYST1 85.810 85.810 217.620 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011654 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004595 0.00000