HEADER PROTEIN BINDING 23-APR-19 6OOL TITLE STRUCTURAL ELUCIDATION OF THE ECTODOMAIN OF MOUSE UNC5H2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NETRIN RECEPTOR UNC5B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNC; COMPND 5 SYNONYM: PROTEIN UNC-5 HOMOLOG 2,PROTEIN UNC-5 HOMOLOG B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: UNC5B, UNC5H2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS CELL SIGNALING, NETRIN, DEPENDENCE RECEPTOR, APOPTOSIS, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.STETEFELD,M.D.MCDOUGALL,P.C.LOEWEN,A.MOYA,M.MEIER REVDAT 3 11-OCT-23 6OOL 1 HETSYN LINK REVDAT 2 29-JUL-20 6OOL 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 29-APR-20 6OOL 0 JRNL AUTH J.STETEFELD,M.D.MCDOUGALL,P.C.LOEWEN,A.MOYA,M.MEIER JRNL TITL STRUCTURAL ELUCIDATION OF THE ECTODOMAIN OF MOUSE UNC5H2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 16578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 903 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1203 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4020 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : 6.43000 REMARK 3 B33 (A**2) : -5.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.220 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.203 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2103 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1873 ; 0.004 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2872 ; 1.971 ; 1.692 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4359 ; 1.399 ; 1.613 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 9.697 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;31.900 ;21.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 334 ;20.486 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.647 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2320 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 457 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLECULAR REPLACEMENT REMARK 4 REMARK 4 6OOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17631 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 159.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15700 REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : 0.70000 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5FFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.6 MG/ML UNC5HC, 100 MM HEPES, 3M REMARK 280 NACL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.02550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.50500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.44500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.50500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.02550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.44500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 27 REMARK 465 VAL A 28 REMARK 465 ASP A 29 REMARK 465 SER A 30 REMARK 465 ALA A 31 REMARK 465 GLY A 32 REMARK 465 GLN A 33 REMARK 465 VAL A 34 REMARK 465 LEU A 35 REMARK 465 PRO A 36 REMARK 465 ASP A 37 REMARK 465 SER A 38 REMARK 465 TYR A 39 REMARK 465 PRO A 40 REMARK 465 SER A 41 REMARK 465 ALA A 42 REMARK 465 PRO A 43 REMARK 465 VAL A 92 REMARK 465 THR A 93 REMARK 465 GLN A 94 REMARK 465 GLU A 95 REMARK 465 SER A 96 REMARK 465 LEU A 97 REMARK 465 ASP A 98 REMARK 465 GLU A 99 REMARK 465 ALA A 100 REMARK 465 THR A 101 REMARK 465 GLY A 102 REMARK 465 LEU A 103 REMARK 465 PRO A 300 REMARK 465 VAL A 301 REMARK 465 ASP A 302 REMARK 465 GLY A 303 REMARK 465 ALA A 304 REMARK 465 TRP A 305 REMARK 465 THR A 306 REMARK 465 GLU A 307 REMARK 465 TRP A 308 REMARK 465 SER A 309 REMARK 465 LYS A 310 REMARK 465 TRP A 311 REMARK 465 SER A 312 REMARK 465 ALA A 313 REMARK 465 CYS A 314 REMARK 465 SER A 315 REMARK 465 THR A 316 REMARK 465 GLU A 317 REMARK 465 CYS A 318 REMARK 465 ALA A 319 REMARK 465 HIS A 320 REMARK 465 TRP A 321 REMARK 465 ARG A 322 REMARK 465 SER A 323 REMARK 465 ARG A 324 REMARK 465 GLU A 325 REMARK 465 CYS A 326 REMARK 465 MET A 327 REMARK 465 ALA A 328 REMARK 465 PRO A 329 REMARK 465 PRO A 330 REMARK 465 PRO A 331 REMARK 465 GLN A 332 REMARK 465 ASN A 333 REMARK 465 GLY A 334 REMARK 465 GLY A 335 REMARK 465 ARG A 336 REMARK 465 ASP A 337 REMARK 465 CYS A 338 REMARK 465 SER A 339 REMARK 465 GLY A 340 REMARK 465 THR A 341 REMARK 465 LEU A 342 REMARK 465 LEU A 343 REMARK 465 ASP A 344 REMARK 465 SER A 345 REMARK 465 LYS A 346 REMARK 465 ASN A 347 REMARK 465 CYS A 348 REMARK 465 THR A 349 REMARK 465 ASP A 350 REMARK 465 GLY A 351 REMARK 465 LEU A 352 REMARK 465 CYS A 353 REMARK 465 VAL A 354 REMARK 465 LEU A 355 REMARK 465 ASN A 356 REMARK 465 GLN A 357 REMARK 465 ARG A 358 REMARK 465 THR A 359 REMARK 465 LEU A 360 REMARK 465 ASN A 361 REMARK 465 ASP A 362 REMARK 465 PRO A 363 REMARK 465 LYS A 364 REMARK 465 SER A 365 REMARK 465 HIS A 366 REMARK 465 PRO A 367 REMARK 465 LEU A 368 REMARK 465 GLU A 369 REMARK 465 THR A 370 REMARK 465 SER A 371 REMARK 465 GLY A 372 REMARK 465 ASP A 373 REMARK 465 VAL A 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 TRP A 252 O5 MAN A 501 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 152.23 -43.23 REMARK 500 LYS A 61 -127.56 61.79 REMARK 500 ASN A 89 -82.05 -154.32 REMARK 500 GLU A 191 -59.53 75.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 147 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 6OOL A 25 374 UNP Q8K1S3 UNC5B_MOUSE 25 374 SEQRES 1 A 350 LEU ALA GLY VAL ASP SER ALA GLY GLN VAL LEU PRO ASP SEQRES 2 A 350 SER TYR PRO SER ALA PRO ALA GLU GLN LEU PRO TYR PHE SEQRES 3 A 350 LEU LEU GLU PRO GLN ASP ALA TYR ILE VAL LYS ASN LYS SEQRES 4 A 350 PRO VAL GLU LEU HIS CYS ARG ALA PHE PRO ALA THR GLN SEQRES 5 A 350 ILE TYR PHE LYS CYS ASN GLY GLU TRP VAL SER GLN ASN SEQRES 6 A 350 ASP HIS VAL THR GLN GLU SER LEU ASP GLU ALA THR GLY SEQRES 7 A 350 LEU ARG VAL ARG GLU VAL GLN ILE GLU VAL SER ARG GLN SEQRES 8 A 350 GLN VAL GLU GLU LEU PHE GLY LEU GLU ASP TYR TRP CYS SEQRES 9 A 350 GLN CYS VAL ALA TRP SER SER SER GLY THR THR LYS SER SEQRES 10 A 350 ARG ARG ALA TYR ILE ARG ILE ALA TYR LEU ARG LYS ASN SEQRES 11 A 350 PHE ASP GLN GLU PRO LEU ALA LYS GLU VAL PRO LEU ASP SEQRES 12 A 350 HIS GLU VAL LEU LEU GLN CYS ARG PRO PRO GLU GLY VAL SEQRES 13 A 350 PRO VAL ALA GLU VAL GLU TRP LEU LYS ASN GLU ASP VAL SEQRES 14 A 350 ILE ASP PRO ALA GLN ASP THR ASN PHE LEU LEU THR ILE SEQRES 15 A 350 ASP HIS ASN LEU ILE ILE ARG GLN ALA ARG LEU SER ASP SEQRES 16 A 350 THR ALA ASN TYR THR CYS VAL ALA LYS ASN ILE VAL ALA SEQRES 17 A 350 LYS ARG ARG SER THR THR ALA THR VAL ILE VAL TYR VAL SEQRES 18 A 350 ASN GLY GLY TRP SER SER TRP ALA GLU TRP SER PRO CYS SEQRES 19 A 350 SER ASN ARG CYS GLY ARG GLY TRP GLN LYS ARG THR ARG SEQRES 20 A 350 THR CYS THR ASN PRO ALA PRO LEU ASN GLY GLY ALA PHE SEQRES 21 A 350 CYS GLU GLY GLN ALA PHE GLN LYS THR ALA CYS THR THR SEQRES 22 A 350 VAL CYS PRO VAL ASP GLY ALA TRP THR GLU TRP SER LYS SEQRES 23 A 350 TRP SER ALA CYS SER THR GLU CYS ALA HIS TRP ARG SER SEQRES 24 A 350 ARG GLU CYS MET ALA PRO PRO PRO GLN ASN GLY GLY ARG SEQRES 25 A 350 ASP CYS SER GLY THR LEU LEU ASP SER LYS ASN CYS THR SEQRES 26 A 350 ASP GLY LEU CYS VAL LEU ASN GLN ARG THR LEU ASN ASP SEQRES 27 A 350 PRO LYS SER HIS PRO LEU GLU THR SER GLY ASP VAL HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET MAN A 501 11 HET MAN A 502 11 HET CL A 506 1 HET CL A 507 1 HET CL A 508 1 HET CL A 509 1 HET CL A 510 1 HET CL A 511 1 HET CL A 512 1 HET CL A 513 1 HET CL A 514 1 HET CL A 515 1 HET CL A 516 1 HET CL A 517 1 HET CL A 518 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 FUC C6 H12 O5 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 5 CL 13(CL 1-) FORMUL 18 HOH *55(H2 O) HELIX 1 AA1 SER A 113 LEU A 120 1 8 SHEET 1 AA1 3 TYR A 49 LEU A 52 0 SHEET 2 AA1 3 VAL A 65 PHE A 72 -1 O PHE A 72 N TYR A 49 SHEET 3 AA1 3 ARG A 106 VAL A 112 -1 O ARG A 106 N ALA A 71 SHEET 1 AA2 4 ALA A 57 VAL A 60 0 SHEET 2 AA2 4 ALA A 144 LEU A 151 1 O ALA A 149 N ILE A 59 SHEET 3 AA2 4 TYR A 126 TRP A 133 -1 N CYS A 128 O ALA A 144 SHEET 4 AA2 4 THR A 138 LYS A 140 -1 O THR A 139 N ALA A 132 SHEET 1 AA3 5 GLU A 84 VAL A 86 0 SHEET 2 AA3 5 GLN A 76 CYS A 81 -1 N CYS A 81 O GLU A 84 SHEET 3 AA3 5 TYR A 126 TRP A 133 -1 O VAL A 131 N TYR A 78 SHEET 4 AA3 5 ALA A 144 LEU A 151 -1 O ALA A 144 N CYS A 128 SHEET 5 AA3 5 GLY A 179 VAL A 180 -1 O VAL A 180 N TYR A 150 SHEET 1 AA4 5 LYS A 162 PRO A 165 0 SHEET 2 AA4 5 ALA A 239 TYR A 244 1 O ILE A 242 N VAL A 164 SHEET 3 AA4 5 ALA A 221 LYS A 228 -1 N TYR A 223 O ALA A 239 SHEET 4 AA4 5 GLU A 184 LYS A 189 -1 N LEU A 188 O THR A 224 SHEET 5 AA4 5 ASP A 192 VAL A 193 -1 O ASP A 192 N LYS A 189 SHEET 1 AA5 4 LYS A 162 PRO A 165 0 SHEET 2 AA5 4 ALA A 239 TYR A 244 1 O ILE A 242 N VAL A 164 SHEET 3 AA5 4 ALA A 221 LYS A 228 -1 N TYR A 223 O ALA A 239 SHEET 4 AA5 4 LYS A 233 ARG A 235 -1 O ARG A 234 N ALA A 227 SHEET 1 AA6 3 VAL A 170 LEU A 172 0 SHEET 2 AA6 3 LEU A 210 ILE A 212 -1 O LEU A 210 N LEU A 172 SHEET 3 AA6 3 PHE A 202 LEU A 204 -1 N LEU A 203 O ILE A 211 SHEET 1 AA7 2 GLY A 263 THR A 270 0 SHEET 2 AA7 2 PHE A 290 THR A 297 -1 O THR A 297 N GLY A 263 SSBOND 1 CYS A 69 CYS A 130 1555 1555 2.06 SSBOND 2 CYS A 81 CYS A 128 1555 1555 2.15 SSBOND 3 CYS A 174 CYS A 225 1555 1555 2.11 SSBOND 4 CYS A 258 CYS A 295 1555 1555 2.11 SSBOND 5 CYS A 273 CYS A 285 1555 1555 2.13 LINK ND2 ASN A 222 C1 NAG B 1 1555 1555 1.47 LINK CD1 TRP A 249 C1 MAN A 502 1555 1555 1.54 LINK CD1 TRP A 252 C1 MAN A 501 1555 1555 1.49 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.48 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.47 CISPEP 1 PHE A 72 PRO A 73 0 -9.24 CISPEP 2 VAL A 180 PRO A 181 0 -2.08 CISPEP 3 ASN A 275 PRO A 276 0 -5.04 CRYST1 56.051 76.890 159.010 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017841 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006289 0.00000