HEADER HYDROLASE/RNA 23-APR-19 6OON TITLE HUMAN ARGONAUTE4 BOUND TO GUIDE RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGONAUTE-4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAGO4,ARGONAUTE RISC CATALYTIC COMPONENT 4,EUKARYOTIC COMPND 5 TRANSLATION INITIATION FACTOR 2C 4,EIF2C 4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*UP*U)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGO4, EIF2C4, KIAA1567; SOURCE 6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS RNA, MIRNA, RNA BINDING PROTEIN, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.S.PARK,J.A.BRACKBILL,K.NAKANISHI REVDAT 5 11-OCT-23 6OON 1 REMARK REVDAT 4 10-MAR-21 6OON 1 TITLE REVDAT 3 04-DEC-19 6OON 1 REMARK REVDAT 2 13-NOV-19 6OON 1 JRNL REVDAT 1 31-JUL-19 6OON 0 JRNL AUTH M.S.PARK,R.ARAYA-SECCHI,J.A.BRACKBILL,H.D.PHAN,A.C.KEHLING, JRNL AUTH 2 E.W.ABD EL-WAHAB,D.M.DAYEH,M.SOTOMAYOR,K.NAKANISHI JRNL TITL MULTIDOMAIN CONVERGENCE OF ARGONAUTE DURING RISC ASSEMBLY JRNL TITL 2 CORRELATES WITH THE FORMATION OF INTERNAL WATER CLUSTERS. JRNL REF MOL.CELL V. 75 725 2019 JRNL REFN ISSN 1097-2765 JRNL PMID 31324450 JRNL DOI 10.1016/J.MOLCEL.2019.06.011 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 91128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0981 - 5.9004 0.98 2984 155 0.1723 0.1793 REMARK 3 2 5.9004 - 4.6845 1.00 2952 159 0.1569 0.1848 REMARK 3 3 4.6845 - 4.0927 1.00 2972 135 0.1368 0.1600 REMARK 3 4 4.0927 - 3.7187 1.00 2913 164 0.1503 0.1882 REMARK 3 5 3.7187 - 3.4522 1.00 2933 146 0.1634 0.1815 REMARK 3 6 3.4522 - 3.2487 1.00 2896 172 0.1636 0.2344 REMARK 3 7 3.2487 - 3.0860 1.00 2915 143 0.1759 0.1987 REMARK 3 8 3.0860 - 2.9517 0.99 2901 146 0.1706 0.2076 REMARK 3 9 2.9517 - 2.8381 0.99 2909 144 0.1732 0.2210 REMARK 3 10 2.8381 - 2.7402 0.99 2888 166 0.1719 0.1976 REMARK 3 11 2.7402 - 2.6545 0.99 2916 152 0.1701 0.2120 REMARK 3 12 2.6545 - 2.5786 0.99 2868 169 0.1638 0.1780 REMARK 3 13 2.5786 - 2.5107 0.99 2859 151 0.1687 0.1981 REMARK 3 14 2.5107 - 2.4495 0.99 2868 162 0.1715 0.2140 REMARK 3 15 2.4495 - 2.3938 0.99 2887 145 0.1711 0.1937 REMARK 3 16 2.3938 - 2.3429 0.99 2877 159 0.1692 0.2047 REMARK 3 17 2.3429 - 2.2960 0.99 2924 131 0.1677 0.1813 REMARK 3 18 2.2960 - 2.2527 0.99 2835 152 0.1708 0.2163 REMARK 3 19 2.2527 - 2.2124 0.99 2901 155 0.1730 0.1925 REMARK 3 20 2.2124 - 2.1749 0.99 2857 167 0.1741 0.2040 REMARK 3 21 2.1749 - 2.1399 0.99 2833 147 0.1882 0.2193 REMARK 3 22 2.1399 - 2.1069 0.99 2896 140 0.1975 0.2280 REMARK 3 23 2.1069 - 2.0759 0.99 2808 167 0.2010 0.2408 REMARK 3 24 2.0759 - 2.0467 0.98 2870 143 0.2070 0.2717 REMARK 3 25 2.0467 - 2.0190 0.98 2869 155 0.2168 0.2601 REMARK 3 26 2.0190 - 1.9928 0.98 2828 146 0.2293 0.2540 REMARK 3 27 1.9928 - 1.9679 0.98 2877 151 0.2427 0.2701 REMARK 3 28 1.9679 - 1.9442 0.98 2797 154 0.2488 0.2706 REMARK 3 29 1.9442 - 1.9216 0.98 2888 134 0.2681 0.2822 REMARK 3 30 1.9216 - 1.9000 0.98 2857 140 0.2806 0.3203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6736 REMARK 3 ANGLE : 1.117 9180 REMARK 3 CHIRALITY : 0.048 1029 REMARK 3 PLANARITY : 0.006 1137 REMARK 3 DIHEDRAL : 14.471 2576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1024 0.8114 26.2868 REMARK 3 T TENSOR REMARK 3 T11: 0.2653 T22: 0.5390 REMARK 3 T33: 0.2710 T12: -0.1185 REMARK 3 T13: -0.0102 T23: 0.0871 REMARK 3 L TENSOR REMARK 3 L11: 2.6593 L22: 1.4648 REMARK 3 L33: 1.4607 L12: 0.1733 REMARK 3 L13: 0.9862 L23: -0.0339 REMARK 3 S TENSOR REMARK 3 S11: -0.3067 S12: 0.7633 S13: 0.2783 REMARK 3 S21: -0.2786 S22: 0.1017 S23: -0.3121 REMARK 3 S31: -0.2328 S32: 0.7640 S33: 0.1283 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6413 4.4410 2.9092 REMARK 3 T TENSOR REMARK 3 T11: 0.5912 T22: 0.4639 REMARK 3 T33: 0.3117 T12: -0.1309 REMARK 3 T13: -0.0152 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.2350 L22: 1.4344 REMARK 3 L33: 3.0564 L12: 0.5156 REMARK 3 L13: 0.1014 L23: -0.4373 REMARK 3 S TENSOR REMARK 3 S11: -0.2731 S12: 0.4895 S13: 0.2245 REMARK 3 S21: -0.5739 S22: 0.2565 S23: 0.0811 REMARK 3 S31: -0.5602 S32: 0.2263 S33: 0.0021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 375 THROUGH 562 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.2712 8.4547 18.2042 REMARK 3 T TENSOR REMARK 3 T11: 0.3044 T22: 0.2246 REMARK 3 T33: 0.2359 T12: 0.0095 REMARK 3 T13: -0.0808 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.5852 L22: 1.1739 REMARK 3 L33: 0.9682 L12: -0.3885 REMARK 3 L13: 0.1042 L23: -0.0456 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: 0.3119 S13: -0.1479 REMARK 3 S21: -0.3511 S22: 0.0246 S23: 0.3785 REMARK 3 S31: -0.1795 S32: -0.1357 S33: -0.1175 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 563 THROUGH 861 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.1136 10.7662 32.4528 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.1299 REMARK 3 T33: 0.1348 T12: -0.0235 REMARK 3 T13: 0.0157 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.4793 L22: 1.6777 REMARK 3 L33: 0.7911 L12: -0.4809 REMARK 3 L13: 0.0443 L23: 0.4134 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.0231 S13: 0.0715 REMARK 3 S21: -0.1491 S22: 0.0708 S23: -0.0332 REMARK 3 S31: -0.1328 S32: 0.0857 S33: -0.0230 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6050 6.0871 10.5668 REMARK 3 T TENSOR REMARK 3 T11: 0.4548 T22: 0.7578 REMARK 3 T33: 0.5428 T12: -0.1268 REMARK 3 T13: 0.0166 T23: 0.1133 REMARK 3 L TENSOR REMARK 3 L11: 0.0135 L22: 0.0302 REMARK 3 L33: 0.0480 L12: -0.0472 REMARK 3 L13: 0.0016 L23: 0.0558 REMARK 3 S TENSOR REMARK 3 S11: -0.0909 S12: 0.6794 S13: 0.1903 REMARK 3 S21: -0.2666 S22: -0.1029 S23: -0.3866 REMARK 3 S31: -0.4787 S32: 0.5748 S33: 0.1795 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.082 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OLA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG5000, 0.1 M MES, PH=6, 1 M LICL, REMARK 280 100 MM TRIMETHYLAMINE HYDROCHLORIDE, PH 6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 106.99000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.00550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 106.99000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.00550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1083 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1311 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 PRO A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 PRO A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 PRO A 110 REMARK 465 GLY A 111 REMARK 465 GLU A 112 REMARK 465 GLY A 113 REMARK 465 LYS A 114 REMARK 465 ASP A 115 REMARK 465 ASN A 234 REMARK 465 GLU A 235 REMARK 465 GLN A 236 REMARK 465 THR A 237 REMARK 465 THR A 260 REMARK 465 HIS A 261 REMARK 465 CYS A 262 REMARK 465 GLY A 263 REMARK 465 GLN A 264 REMARK 465 MET A 265 REMARK 465 LYS A 266 REMARK 465 GLN A 287 REMARK 465 LEU A 288 REMARK 465 GLU A 289 REMARK 465 ASN A 290 REMARK 465 GLY A 291 REMARK 465 GLN A 292 REMARK 465 ALA A 293 REMARK 465 GLY A 321 REMARK 465 GLN A 322 REMARK 465 GLU A 323 REMARK 465 GLN A 324 REMARK 465 LYS A 325 REMARK 465 HIS A 326 REMARK 465 ASN A 376 REMARK 465 SER A 377 REMARK 465 MET A 378 REMARK 465 VAL A 379 REMARK 465 GLY A 380 REMARK 465 GLY A 381 REMARK 465 ALA A 595 REMARK 465 GLY A 596 REMARK 465 ASP A 597 REMARK 465 GLY A 598 REMARK 465 SER A 626 REMARK 465 ARG A 627 REMARK 465 GLN A 628 REMARK 465 GLU A 629 REMARK 465 ILE A 630 REMARK 465 SER A 631 REMARK 465 GLN A 632 REMARK 465 GLU A 633 REMARK 465 LEU A 634 REMARK 465 LEU A 635 REMARK 465 HIS A 824 REMARK 465 ASP A 825 REMARK 465 SER A 826 REMARK 465 ALA A 827 REMARK 465 GLU A 828 REMARK 465 GLY A 829 REMARK 465 SER A 830 REMARK 465 HIS A 831 REMARK 465 VAL A 832 REMARK 465 SER A 833 REMARK 465 GLY A 834 REMARK 465 GLN A 835 REMARK 465 SER A 836 REMARK 465 ASN A 837 REMARK 465 GLY A 838 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A B 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A B 9 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A B 9 N1 C2 N3 C4 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 647 N CA C O CB CG SD REMARK 480 MET A 647 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A B 1 P A B 1 OP3 -0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 48.76 -78.31 REMARK 500 GLU A 54 -102.75 -45.47 REMARK 500 LYS A 87 -106.05 -115.97 REMARK 500 PRO A 97 49.35 -71.26 REMARK 500 TRP A 201 -47.14 72.70 REMARK 500 LEU A 228 33.72 -94.05 REMARK 500 LEU A 240 -175.68 -65.74 REMARK 500 ASP A 242 -84.12 -40.94 REMARK 500 LYS A 305 -73.66 -90.72 REMARK 500 SER A 615 -53.45 -126.09 REMARK 500 THR A 741 -47.10 73.87 REMARK 500 ASP A 772 89.96 -151.01 REMARK 500 LYS A 822 98.51 -46.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1352 DISTANCE = 6.50 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN WAS CO-PURIFIED WITH ENDOGENOUS RNA FROM INSECT CELLS. REMARK 999 THEREFORE, THE PRECISE SEQUENCE OR LENGTH OF THE RNA IS UNKNOWN. REMARK 999 THE 5' END AND 3' END OF THE RNA ARE TIGHTLY BOUND TO THE PROTEIN REMARK 999 BUT THE MIDDLE NUCLEOTIDES WERE DISORDERED. DBREF 6OON A 1 861 UNP Q9HCK5 AGO4_HUMAN 1 861 DBREF 6OON B 1 21 PDB 6OON 6OON 1 21 SEQADV 6OON GLY A -1 UNP Q9HCK5 EXPRESSION TAG SEQADV 6OON SER A 0 UNP Q9HCK5 EXPRESSION TAG SEQRES 1 A 863 GLY SER MET GLU ALA LEU GLY PRO GLY PRO PRO ALA SER SEQRES 2 A 863 LEU PHE GLN PRO PRO ARG ARG PRO GLY LEU GLY THR VAL SEQRES 3 A 863 GLY LYS PRO ILE ARG LEU LEU ALA ASN HIS PHE GLN VAL SEQRES 4 A 863 GLN ILE PRO LYS ILE ASP VAL TYR HIS TYR ASP VAL ASP SEQRES 5 A 863 ILE LYS PRO GLU LYS ARG PRO ARG ARG VAL ASN ARG GLU SEQRES 6 A 863 VAL VAL ASP THR MET VAL ARG HIS PHE LYS MET GLN ILE SEQRES 7 A 863 PHE GLY ASP ARG GLN PRO GLY TYR ASP GLY LYS ARG ASN SEQRES 8 A 863 MET TYR THR ALA HIS PRO LEU PRO ILE GLY ARG ASP ARG SEQRES 9 A 863 VAL ASP MET GLU VAL THR LEU PRO GLY GLU GLY LYS ASP SEQRES 10 A 863 GLN THR PHE LYS VAL SER VAL GLN TRP VAL SER VAL VAL SEQRES 11 A 863 SER LEU GLN LEU LEU LEU GLU ALA LEU ALA GLY HIS LEU SEQRES 12 A 863 ASN GLU VAL PRO ASP ASP SER VAL GLN ALA LEU ASP VAL SEQRES 13 A 863 ILE THR ARG HIS LEU PRO SER MET ARG TYR THR PRO VAL SEQRES 14 A 863 GLY ARG SER PHE PHE SER PRO PRO GLU GLY TYR TYR HIS SEQRES 15 A 863 PRO LEU GLY GLY GLY ARG GLU VAL TRP PHE GLY PHE HIS SEQRES 16 A 863 GLN SER VAL ARG PRO ALA MET TRP ASN MET MET LEU ASN SEQRES 17 A 863 ILE ASP VAL SER ALA THR ALA PHE TYR ARG ALA GLN PRO SEQRES 18 A 863 ILE ILE GLU PHE MET CYS GLU VAL LEU ASP ILE GLN ASN SEQRES 19 A 863 ILE ASN GLU GLN THR LYS PRO LEU THR ASP SER GLN ARG SEQRES 20 A 863 VAL LYS PHE THR LYS GLU ILE ARG GLY LEU LYS VAL GLU SEQRES 21 A 863 VAL THR HIS CYS GLY GLN MET LYS ARG LYS TYR ARG VAL SEQRES 22 A 863 CYS ASN VAL THR ARG ARG PRO ALA SER HIS GLN THR PHE SEQRES 23 A 863 PRO LEU GLN LEU GLU ASN GLY GLN ALA MET GLU CYS THR SEQRES 24 A 863 VAL ALA GLN TYR PHE LYS GLN LYS TYR SER LEU GLN LEU SEQRES 25 A 863 LYS TYR PRO HIS LEU PRO CYS LEU GLN VAL GLY GLN GLU SEQRES 26 A 863 GLN LYS HIS THR TYR LEU PRO LEU GLU VAL CYS ASN ILE SEQRES 27 A 863 VAL ALA GLY GLN ARG CYS ILE LYS LYS LEU THR ASP ASN SEQRES 28 A 863 GLN THR SER THR MET ILE LYS ALA THR ALA ARG SER ALA SEQRES 29 A 863 PRO ASP ARG GLN GLU GLU ILE SER ARG LEU VAL LYS SER SEQRES 30 A 863 ASN SER MET VAL GLY GLY PRO ASP PRO TYR LEU LYS GLU SEQRES 31 A 863 PHE GLY ILE VAL VAL HIS ASN GLU MET THR GLU LEU THR SEQRES 32 A 863 GLY ARG VAL LEU PRO ALA PRO MET LEU GLN TYR GLY GLY SEQRES 33 A 863 ARG ASN LYS THR VAL ALA THR PRO ASN GLN GLY VAL TRP SEQRES 34 A 863 ASP MET ARG GLY LYS GLN PHE TYR ALA GLY ILE GLU ILE SEQRES 35 A 863 LYS VAL TRP ALA VAL ALA CYS PHE ALA PRO GLN LYS GLN SEQRES 36 A 863 CYS ARG GLU ASP LEU LEU LYS SER PHE THR ASP GLN LEU SEQRES 37 A 863 ARG LYS ILE SER LYS ASP ALA GLY MET PRO ILE GLN GLY SEQRES 38 A 863 GLN PRO CYS PHE CYS LYS TYR ALA GLN GLY ALA ASP SER SEQRES 39 A 863 VAL GLU PRO MET PHE LYS HIS LEU LYS MET THR TYR VAL SEQRES 40 A 863 GLY LEU GLN LEU ILE VAL VAL ILE LEU PRO GLY LYS THR SEQRES 41 A 863 PRO VAL TYR ALA GLU VAL LYS ARG VAL GLY ASP THR LEU SEQRES 42 A 863 LEU GLY MET ALA THR GLN CYS VAL GLN VAL LYS ASN VAL SEQRES 43 A 863 VAL LYS THR SER PRO GLN THR LEU SER ASN LEU CYS LEU SEQRES 44 A 863 LYS ILE ASN ALA LYS LEU GLY GLY ILE ASN ASN VAL LEU SEQRES 45 A 863 VAL PRO HIS GLN ARG PRO SER VAL PHE GLN GLN PRO VAL SEQRES 46 A 863 ILE PHE LEU GLY ALA ASP VAL THR HIS PRO PRO ALA GLY SEQRES 47 A 863 ASP GLY LYS LYS PRO SER ILE ALA ALA VAL VAL GLY SER SEQRES 48 A 863 MET ASP GLY HIS PRO SER ARG TYR CYS ALA THR VAL ARG SEQRES 49 A 863 VAL GLN THR SER ARG GLN GLU ILE SER GLN GLU LEU LEU SEQRES 50 A 863 TYR SER GLN GLU VAL ILE GLN ASP LEU THR ASN MET VAL SEQRES 51 A 863 ARG GLU LEU LEU ILE GLN PHE TYR LYS SER THR ARG PHE SEQRES 52 A 863 LYS PRO THR ARG ILE ILE TYR TYR ARG GLY GLY VAL SER SEQRES 53 A 863 GLU GLY GLN MET LYS GLN VAL ALA TRP PRO GLU LEU ILE SEQRES 54 A 863 ALA ILE ARG LYS ALA CYS ILE SER LEU GLU GLU ASP TYR SEQRES 55 A 863 ARG PRO GLY ILE THR TYR ILE VAL VAL GLN LYS ARG HIS SEQRES 56 A 863 HIS THR ARG LEU PHE CYS ALA ASP LYS THR GLU ARG VAL SEQRES 57 A 863 GLY LYS SER GLY ASN VAL PRO ALA GLY THR THR VAL ASP SEQRES 58 A 863 SER THR ILE THR HIS PRO SER GLU PHE ASP PHE TYR LEU SEQRES 59 A 863 CYS SER HIS ALA GLY ILE GLN GLY THR SER ARG PRO SER SEQRES 60 A 863 HIS TYR GLN VAL LEU TRP ASP ASP ASN CYS PHE THR ALA SEQRES 61 A 863 ASP GLU LEU GLN LEU LEU THR TYR GLN LEU CYS HIS THR SEQRES 62 A 863 TYR VAL ARG CYS THR ARG SER VAL SER ILE PRO ALA PRO SEQRES 63 A 863 ALA TYR TYR ALA ARG LEU VAL ALA PHE ARG ALA ARG TYR SEQRES 64 A 863 HIS LEU VAL ASP LYS ASP HIS ASP SER ALA GLU GLY SER SEQRES 65 A 863 HIS VAL SER GLY GLN SER ASN GLY ARG ASP PRO GLN ALA SEQRES 66 A 863 LEU ALA LYS ALA VAL GLN ILE HIS HIS ASP THR GLN HIS SEQRES 67 A 863 THR MET TYR PHE ALA SEQRES 1 B 12 A A A A A A A A A A U U FORMUL 3 HOH *464(H2 O) HELIX 1 AA1 PRO A 57 PHE A 72 1 16 HELIX 2 AA2 LEU A 130 ALA A 138 1 9 HELIX 3 AA3 PRO A 145 TYR A 164 1 20 HELIX 4 AA4 PRO A 219 LEU A 228 1 10 HELIX 5 AA5 THR A 241 ARG A 253 1 13 HELIX 6 AA6 VAL A 298 LYS A 305 1 8 HELIX 7 AA7 GLU A 332 CYS A 334 5 3 HELIX 8 AA8 THR A 347 ALA A 359 1 13 HELIX 9 AA9 SER A 361 SER A 375 1 15 HELIX 10 AB1 ASP A 383 PHE A 389 1 7 HELIX 11 AB2 ARG A 455 ALA A 473 1 19 HELIX 12 AB3 GLY A 489 ASP A 491 5 3 HELIX 13 AB4 SER A 492 TYR A 504 1 13 HELIX 14 AB5 PRO A 519 THR A 530 1 12 HELIX 15 AB6 VAL A 541 LYS A 546 1 6 HELIX 16 AB7 SER A 548 LEU A 563 1 16 HELIX 17 AB8 PRO A 572 ARG A 575 5 4 HELIX 18 AB9 PRO A 576 GLN A 581 5 6 HELIX 19 AC1 ASP A 643 ARG A 660 1 18 HELIX 20 AC2 SER A 674 GLU A 697 1 24 HELIX 21 AC3 ASP A 721 ARG A 725 5 5 HELIX 22 AC4 THR A 777 CYS A 789 1 13 HELIX 23 AC5 PRO A 802 LEU A 819 1 18 HELIX 24 AC6 ASP A 840 VAL A 848 1 9 SHEET 1 AA111 TYR A 617 GLN A 624 0 SHEET 2 AA111 SER A 602 SER A 609 -1 N GLY A 608 O CYS A 618 SHEET 3 AA111 VAL A 583 THR A 591 -1 N GLY A 587 O VAL A 607 SHEET 4 AA111 ARG A 665 ARG A 670 1 O ILE A 667 N LEU A 586 SHEET 5 AA111 GLY A 703 GLN A 710 1 O THR A 705 N TYR A 668 SHEET 6 AA111 SER A 765 ASP A 772 -1 O HIS A 766 N GLN A 710 SHEET 7 AA111 ASP A 749 CYS A 753 -1 N PHE A 750 O TYR A 767 SHEET 8 AA111 THR A 736 VAL A 738 -1 N THR A 736 O CYS A 753 SHEET 9 AA111 THR A 398 VAL A 404 -1 N ARG A 403 O THR A 737 SHEET 10 AA111 LYS A 26 ALA A 32 -1 N LEU A 30 O LEU A 400 SHEET 11 AA111 LEU A 717 CYS A 719 -1 O PHE A 718 N LEU A 31 SHEET 1 AA2 4 THR A 165 VAL A 167 0 SHEET 2 AA2 4 SER A 170 SER A 173 -1 O PHE A 172 N THR A 165 SHEET 3 AA2 4 ARG A 186 PRO A 198 -1 O PHE A 192 N PHE A 171 SHEET 4 AA2 4 PRO A 181 GLY A 183 -1 N LEU A 182 O ARG A 186 SHEET 1 AA3 6 THR A 165 VAL A 167 0 SHEET 2 AA3 6 SER A 170 SER A 173 -1 O PHE A 172 N THR A 165 SHEET 3 AA3 6 ARG A 186 PRO A 198 -1 O PHE A 192 N PHE A 171 SHEET 4 AA3 6 MET A 203 TYR A 215 -1 O ASP A 208 N HIS A 193 SHEET 5 AA3 6 HIS A 34 GLN A 38 -1 N PHE A 35 O LEU A 205 SHEET 6 AA3 6 VAL A 392 VAL A 393 -1 O VAL A 392 N GLN A 38 SHEET 1 AA4 5 GLY A 83 TYR A 84 0 SHEET 2 AA4 5 ASN A 89 THR A 92 -1 O TYR A 91 N GLY A 83 SHEET 3 AA4 5 ASP A 43 LYS A 52 -1 N TYR A 47 O MET A 90 SHEET 4 AA4 5 PHE A 118 SER A 129 -1 O GLN A 123 N ASP A 48 SHEET 5 AA4 5 VAL A 103 VAL A 107 -1 N VAL A 107 O PHE A 118 SHEET 1 AA5 3 TYR A 269 ARG A 270 0 SHEET 2 AA5 3 LYS A 256 GLU A 258 -1 N VAL A 257 O TYR A 269 SHEET 3 AA5 3 ASN A 335 ILE A 336 -1 O ASN A 335 N GLU A 258 SHEET 1 AA6 3 ASN A 273 VAL A 274 0 SHEET 2 AA6 3 CYS A 317 GLN A 319 -1 O GLN A 319 N ASN A 273 SHEET 3 AA6 3 LEU A 329 PRO A 330 -1 O LEU A 329 N LEU A 318 SHEET 1 AA7 2 THR A 283 PHE A 284 0 SHEET 2 AA7 2 CYS A 296 THR A 297 -1 O CYS A 296 N PHE A 284 SHEET 1 AA8 3 VAL A 419 ALA A 420 0 SHEET 2 AA8 3 LEU A 410 GLN A 411 -1 N LEU A 410 O ALA A 420 SHEET 3 AA8 3 VAL A 569 LEU A 570 -1 O VAL A 569 N GLN A 411 SHEET 1 AA9 4 PHE A 483 TYR A 486 0 SHEET 2 AA9 4 TRP A 443 CYS A 447 1 N VAL A 445 O PHE A 483 SHEET 3 AA9 4 LEU A 509 LEU A 514 1 O VAL A 511 N ALA A 444 SHEET 4 AA9 4 THR A 536 GLN A 540 1 O GLN A 537 N VAL A 512 CISPEP 1 LYS A 52 PRO A 53 0 8.23 CISPEP 2 HIS A 613 PRO A 614 0 -9.73 CRYST1 213.980 68.011 83.270 90.00 102.68 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004673 0.000000 0.001051 0.00000 SCALE2 0.000000 0.014704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012309 0.00000