HEADER PROTEIN BINDING 25-APR-19 6OQ9 TITLE SOLUTION STRUCTURE OF VEK50 IN THE BOUND FORM WITH PLASMINOGEN KRINGLE TITLE 2 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN-BINDING GROUP A STREPTOCOCCAL M-LIKE PROTEIN COMPND 3 PAM; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 85-133; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: PAM, EMM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PLASMINOGEN BINDING PEPTIDE, BLOOD CLOTTING, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Y.YUAN,F.J.CASTELLINO REVDAT 4 14-JUN-23 6OQ9 1 REMARK REVDAT 3 18-DEC-19 6OQ9 1 REMARK REVDAT 2 02-OCT-19 6OQ9 1 JRNL REMARK REVDAT 1 24-JUL-19 6OQ9 0 JRNL AUTH Y.YUAN,Y.A.AYINUOLA,D.SINGH,O.AYINUOLA,J.A.MAYFIELD,A.QUEK, JRNL AUTH 2 J.C.WHISSTOCK,R.H.P.LAW,S.W.LEE,V.A.PLOPLIS,F.J.CASTELLINO JRNL TITL SOLUTION STRUCTURAL MODEL OF THE COMPLEX OF THE BINDING JRNL TITL 2 REGIONS OF HUMAN PLASMINOGEN WITH ITS M-PROTEIN RECEPTOR JRNL TITL 3 FROM STREPTOCOCCUS PYOGENES. JRNL REF J.STRUCT.BIOL. V. 208 18 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31301349 JRNL DOI 10.1016/J.JSB.2019.07.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240896. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 VEK50, 1.5 MM KRINGLE 2, 2 UG/ML REMARK 210 DSS, 20 MM [U-2H] BIS-TRIS-D19, REMARK 210 2 UG/ML SODIUM AZIDE, 93% H2O/7% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CS-ROSETTA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 6 -50.87 85.67 REMARK 500 1 ALA A 50 77.78 -64.59 REMARK 500 2 ALA A 40 29.49 -149.19 REMARK 500 2 GLU A 41 75.04 -108.78 REMARK 500 2 ASP A 51 89.07 58.03 REMARK 500 3 ALA A 8 -44.15 -159.89 REMARK 500 3 GLU A 41 80.21 -154.21 REMARK 500 4 GLU A 4 71.21 61.10 REMARK 500 4 ALA A 8 -46.66 -154.65 REMARK 500 4 LYS A 38 29.49 -67.76 REMARK 500 4 ALA A 40 161.04 70.88 REMARK 500 4 GLU A 41 81.11 56.66 REMARK 500 4 LYS A 48 64.09 64.43 REMARK 500 5 LYS A 38 -58.93 64.41 REMARK 500 5 ALA A 50 -95.09 160.61 REMARK 500 5 ASP A 51 -164.00 56.81 REMARK 500 6 LYS A 37 44.62 -151.24 REMARK 500 6 GLU A 39 26.21 -157.19 REMARK 500 6 LYS A 48 178.82 66.31 REMARK 500 7 ALA A 8 -19.87 75.89 REMARK 500 7 GLU A 39 151.27 175.18 REMARK 500 7 GLU A 41 85.71 59.46 REMARK 500 8 VAL A 3 -41.55 -148.56 REMARK 500 8 GLU A 4 -113.65 -132.82 REMARK 500 8 LYS A 5 18.94 56.98 REMARK 500 8 GLU A 39 -81.71 -151.67 REMARK 500 8 ALA A 40 -14.56 174.36 REMARK 500 8 LEU A 49 -39.70 77.09 REMARK 500 8 ASP A 51 93.59 48.27 REMARK 500 9 ALA A 8 -31.78 -130.05 REMARK 500 9 ALA A 40 -161.13 -169.85 REMARK 500 9 GLU A 41 -86.05 -109.94 REMARK 500 9 ARG A 42 122.58 -172.09 REMARK 500 9 LEU A 49 -71.11 -154.89 REMARK 500 9 ALA A 50 35.23 76.15 REMARK 500 10 VAL A 3 -14.40 -140.34 REMARK 500 10 LYS A 5 65.62 66.04 REMARK 500 10 LEU A 6 -14.94 81.51 REMARK 500 10 ALA A 8 -27.93 90.36 REMARK 500 10 ALA A 40 -68.41 -140.92 REMARK 500 10 GLU A 41 79.28 55.55 REMARK 500 10 LEU A 49 1.27 -69.86 REMARK 500 10 ALA A 50 -72.50 -58.94 REMARK 500 11 ALA A 8 -36.29 74.89 REMARK 500 11 ALA A 40 -164.93 61.55 REMARK 500 12 ALA A 8 -41.56 -160.07 REMARK 500 12 ALA A 40 -161.29 -178.98 REMARK 500 12 ARG A 42 122.45 -171.65 REMARK 500 13 GLU A 4 -51.79 -146.65 REMARK 500 13 LEU A 6 -74.31 -82.62 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30603 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF VEK50 IN THE BOUND FORM WITH PLASMINOGEN REMARK 900 KRINGLE 2 DBREF 6OQ9 A 3 51 UNP P49054 PAM_STRPY 85 133 SEQADV 6OQ9 GLY A 1 UNP P49054 EXPRESSION TAG SEQADV 6OQ9 SER A 2 UNP P49054 EXPRESSION TAG SEQADV 6OQ9 TYR A 52 UNP P49054 EXPRESSION TAG SEQRES 1 A 52 GLY SER VAL GLU LYS LEU THR ALA ASP ALA GLU LEU GLN SEQRES 2 A 52 ARG LEU LYS ASN GLU ARG HIS GLU GLU ALA GLU LEU GLU SEQRES 3 A 52 ARG LEU LYS SER GLU ARG HIS ASP HIS ASP LYS LYS GLU SEQRES 4 A 52 ALA GLU ARG LYS ALA LEU GLU ASP LYS LEU ALA ASP TYR HELIX 1 AA1 ALA A 8 ARG A 32 1 25 HELIX 2 AA2 HIS A 33 HIS A 35 5 3 HELIX 3 AA3 ARG A 42 ALA A 50 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1