HEADER PROTEIN BINDING 26-APR-19 6OQJ TITLE SOLUTION STRUCTURE OF THE COMPLEX OF MUTANT VEK50[RH1/AA] AND TITLE 2 PLASMINOGEN KRINGLE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN KRINGLE 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PLASMINOGEN-BINDING GROUP A STREPTOCOCCAL M-LIKE PROTEIN COMPND 7 PAM; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 85-134; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPIC9K; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 11 ORGANISM_TAXID: 1314; SOURCE 12 GENE: PAM, EMM; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PLASMINOGEN BINDING PROTEIN, BLOOD CLOTTING, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.YUAN,F.J.CASTELLINO REVDAT 5 15-MAY-24 6OQJ 1 REMARK REVDAT 4 14-JUN-23 6OQJ 1 REMARK REVDAT 3 18-DEC-19 6OQJ 1 REMARK REVDAT 2 02-OCT-19 6OQJ 1 JRNL REMARK REVDAT 1 24-JUL-19 6OQJ 0 JRNL AUTH Y.YUAN,Y.A.AYINUOLA,D.SINGH,O.AYINUOLA,J.A.MAYFIELD,A.QUEK, JRNL AUTH 2 J.C.WHISSTOCK,R.H.P.LAW,S.W.LEE,V.A.PLOPLIS,F.J.CASTELLINO JRNL TITL SOLUTION STRUCTURAL MODEL OF THE COMPLEX OF THE BINDING JRNL TITL 2 REGIONS OF HUMAN PLASMINOGEN WITH ITS M-PROTEIN RECEPTOR JRNL TITL 3 FROM STREPTOCOCCUS PYOGENES. JRNL REF J.STRUCT.BIOL. V. 208 18 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31301349 JRNL DOI 10.1016/J.JSB.2019.07.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, HADDOCK REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241022. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 PLASMINOGEN KRINGLE 2, 1.0 MM REMARK 210 VEK50[RH1/AA], 20 MM [U-2H] BIS- REMARK 210 TRIS-D19, 2 UG/ML DSS, 2 UG/ML REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; 1 REMARK 210 MM [U-99% 13C; U-99% 15N] REMARK 210 VEK50[RH1/AA], 1 MM PLASMINOGEN REMARK 210 KRINGLE 2, 20 MM [U-2H] BIS-TRIS- REMARK 210 D19, 2 UG/ML DSS, 2 UG/ML SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CS-ROSETTA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS B 105 OD1 ASP B 147 1.58 REMARK 500 HZ3 LYS A 75 OE1 GLU A 78 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 35 38.86 -141.90 REMARK 500 1 LYS A 54 -134.74 53.54 REMARK 500 1 ARG A 62 34.25 70.57 REMARK 500 1 ARG A 76 -63.36 -99.02 REMARK 500 1 LEU B 106 49.64 -102.54 REMARK 500 2 LYS A 54 -129.12 53.59 REMARK 500 2 VAL B 103 99.81 -69.06 REMARK 500 2 LEU B 106 57.18 -91.44 REMARK 500 2 GLU B 122 -75.38 -60.89 REMARK 500 3 PHE A 4 69.61 -113.25 REMARK 500 3 HIS A 40 -177.86 -170.92 REMARK 500 3 LYS A 54 -133.77 52.47 REMARK 500 3 SER B 102 -151.11 -157.97 REMARK 500 3 LEU B 106 41.02 -102.20 REMARK 500 3 ALA B 123 4.01 -154.53 REMARK 500 4 HIS A 10 95.46 -68.59 REMARK 500 4 GLN A 35 60.37 -118.93 REMARK 500 4 HIS A 40 -176.35 -171.62 REMARK 500 4 LYS A 54 -142.10 51.83 REMARK 500 5 GLN A 35 43.01 -90.86 REMARK 500 5 LYS A 54 -129.29 53.38 REMARK 500 5 ARG A 62 37.96 74.99 REMARK 500 5 THR A 71 34.93 -94.73 REMARK 500 5 SER B 102 -157.25 -146.42 REMARK 500 5 LEU B 106 53.37 -97.74 REMARK 500 5 ALA B 123 -31.16 -149.01 REMARK 500 6 HIS A 40 -178.97 -171.50 REMARK 500 6 LYS A 54 -136.16 54.76 REMARK 500 6 SER B 102 -153.04 -149.12 REMARK 500 6 GLU B 122 -71.32 -59.30 REMARK 500 6 ALA B 123 16.66 -149.35 REMARK 500 7 PHE A 4 72.87 -104.08 REMARK 500 7 LYS A 54 -138.94 50.48 REMARK 500 7 SER B 102 -167.68 -123.65 REMARK 500 7 ALA B 123 -25.03 -153.54 REMARK 500 8 HIS A 40 -177.50 -170.60 REMARK 500 8 LYS A 54 -136.44 53.16 REMARK 500 8 ALA B 123 -29.87 -148.90 REMARK 500 9 HIS A 40 -176.46 -172.48 REMARK 500 9 LYS A 54 -146.39 55.08 REMARK 500 9 SER B 102 -150.66 -144.46 REMARK 500 9 THR B 107 -65.72 -94.61 REMARK 500 9 ALA B 123 -18.53 -145.10 REMARK 500 10 GLN A 35 36.89 -94.00 REMARK 500 10 HIS A 40 -176.29 -172.32 REMARK 500 10 LYS A 54 -134.19 51.99 REMARK 500 10 LEU B 106 64.70 -100.76 REMARK 500 10 ALA B 123 -43.54 -156.79 REMARK 500 10 GLU B 124 20.46 -72.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30605 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE COMPLEX OF MUTANT VEK50[RH1/AA] AND REMARK 900 PLASMINOGEN KRINGLE 2 DBREF 6OQJ A 1 87 PDB 6OQJ 6OQJ 1 87 DBREF 6OQJ B 103 151 UNP P49054 PAM_STRPY 85 133 SEQADV 6OQJ GLY B 101 UNP P49054 EXPRESSION TAG SEQADV 6OQJ SER B 102 UNP P49054 EXPRESSION TAG SEQADV 6OQJ ALA B 119 UNP P49054 ARG 101 ENGINEERED MUTATION SEQADV 6OQJ ALA B 120 UNP P49054 HIS 102 ENGINEERED MUTATION SEQADV 6OQJ TYR B 152 UNP P49054 EXPRESSION TAG SEQRES 1 A 87 TYR VAL GLU PHE SER GLU GLU CYS MET HIS GLY SER GLY SEQRES 2 A 87 GLU ASN TYR ASP GLY LYS ILE SER LYS THR MET SER GLY SEQRES 3 A 87 LEU GLU CYS GLN ALA TRP ASP SER GLN SER PRO HIS ALA SEQRES 4 A 87 HIS GLY TYR ILE PRO SER LYS PHE PRO ASN LYS ASN LEU SEQRES 5 A 87 LYS LYS ASN TYR CYS ARG ASN PRO ASP ARG ASP LEU ARG SEQRES 6 A 87 PRO TRP CYS PHE THR THR ASP PRO ASN LYS ARG TRP GLU SEQRES 7 A 87 TYR CYS ASP ILE PRO ARG CYS ALA ALA SEQRES 1 B 52 GLY SER VAL GLU LYS LEU THR ALA ASP ALA GLU LEU GLN SEQRES 2 B 52 ARG LEU LYS ASN GLU ALA ALA GLU GLU ALA GLU LEU GLU SEQRES 3 B 52 ARG LEU LYS SER GLU ARG HIS ASP HIS ASP LYS LYS GLU SEQRES 4 B 52 ALA GLU ARG LYS ALA LEU GLU ASP LYS LEU ALA ASP TYR HELIX 1 AA1 ILE A 43 ASN A 51 5 9 HELIX 2 AA2 LEU B 106 GLU B 121 1 16 HELIX 3 AA3 GLU B 124 ALA B 150 1 27 SHEET 1 AA1 2 TRP A 67 PHE A 69 0 SHEET 2 AA1 2 TRP A 77 TYR A 79 -1 O GLU A 78 N CYS A 68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1