HEADER VIRAL PROTEIN 30-APR-19 6ORJ TITLE CENTRAL SPIKE OF PHIKZ PHAGE TAIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHIKZ164; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS VIRUS PHIKZ; SOURCE 3 ORGANISM_TAXID: 169683; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: B834 KEYWDS MEMBRANE PUNCTURING DEVICE, BETA-HELIX, OB-FOLD, TRIMER, VGRG-LIKE, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.G.LEIMAN,C.BROWNING,M.M.SHNEIDER REVDAT 1 19-JUN-19 6ORJ 0 JRNL AUTH P.G.LEIMAN,C.BROWNING,M.M.SHNEIDER JRNL TITL CENTRAL SPIKE OF PHIKZ PHAGE TAIL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14-3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 51247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7957 22.4522 -11.3192 REMARK 3 T TENSOR REMARK 3 T11: 0.2589 T22: 0.2719 REMARK 3 T33: 0.2824 T12: -0.0158 REMARK 3 T13: -0.0851 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 5.2029 L22: 4.5223 REMARK 3 L33: 5.0363 L12: -0.1704 REMARK 3 L13: -0.8426 L23: 0.2325 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.6853 S13: -0.1733 REMARK 3 S21: -0.4615 S22: -0.1403 S23: 0.4859 REMARK 3 S31: 0.1155 S32: -0.5049 S33: 0.0526 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6002 23.2911 -3.7636 REMARK 3 T TENSOR REMARK 3 T11: 0.1574 T22: 0.1954 REMARK 3 T33: 0.2406 T12: -0.0224 REMARK 3 T13: -0.0158 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 2.9459 L22: 1.8628 REMARK 3 L33: 4.9685 L12: -0.7074 REMARK 3 L13: 1.3881 L23: -1.3548 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: 0.2416 S13: 0.1267 REMARK 3 S21: -0.1298 S22: -0.0372 S23: 0.0345 REMARK 3 S31: 0.0094 S32: -0.0880 S33: 0.0778 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6305 4.9130 10.2161 REMARK 3 T TENSOR REMARK 3 T11: 0.4273 T22: 0.3981 REMARK 3 T33: 0.5997 T12: -0.0116 REMARK 3 T13: -0.0421 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 4.6268 L22: 6.6975 REMARK 3 L33: 8.0446 L12: -5.0829 REMARK 3 L13: -5.6886 L23: 6.6289 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.7477 S13: -0.8181 REMARK 3 S21: -0.7151 S22: -0.5441 S23: 1.8089 REMARK 3 S31: -0.3671 S32: -1.5113 S33: 0.5712 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4200 20.2007 44.5934 REMARK 3 T TENSOR REMARK 3 T11: 0.3102 T22: 0.3238 REMARK 3 T33: 0.2203 T12: -0.0155 REMARK 3 T13: 0.0247 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3785 L22: 0.4776 REMARK 3 L33: 3.6890 L12: 0.0138 REMARK 3 L13: 0.3280 L23: 0.2087 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.2503 S13: -0.0253 REMARK 3 S21: 0.2304 S22: -0.0380 S23: 0.0314 REMARK 3 S31: 0.2223 S32: -0.1562 S33: 0.0329 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ORJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51342 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.65 REMARK 200 R MERGE FOR SHELL (I) : 0.87600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM CHLORIDE, 100 MM CHES, PH REMARK 280 9.0, 0.3% W/V SORBITOL OR ADONITOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.96500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 172.96500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 172.96500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 172.96500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 172.96500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 172.96500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -331.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 82.59500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 41.29750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 71.52937 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 6 REMARK 465 ASP A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 VAL A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 SER A 14 REMARK 465 ASN A 15 REMARK 465 MSE A 16 REMARK 465 GLN A 17 REMARK 465 ASP A 18 REMARK 465 SER A 19 REMARK 465 GLU A 20 REMARK 465 THR A 54 REMARK 465 ALA A 55 REMARK 465 THR A 56 REMARK 465 ASP A 57 REMARK 465 GLY A 58 REMARK 465 GLU A 59 REMARK 465 THR A 60 REMARK 465 THR A 61 REMARK 465 PHE A 62 REMARK 465 ASN A 63 REMARK 465 PRO A 64 REMARK 465 VAL A 65 REMARK 465 GLU A 66 REMARK 465 GLU A 67 REMARK 465 VAL A 68 REMARK 465 VAL A 69 REMARK 465 ASP A 70 REMARK 465 GLY A 71 REMARK 465 VAL A 72 REMARK 465 ASP A 73 REMARK 465 ALA A 74 REMARK 465 ASP A 75 REMARK 465 GLY A 76 REMARK 465 ARG A 77 REMARK 465 ALA A 78 REMARK 465 TYR A 79 REMARK 465 THR A 80 REMARK 465 THR A 81 REMARK 465 LYS A 82 REMARK 465 VAL A 83 REMARK 465 SER A 84 REMARK 465 VAL A 85 REMARK 465 ALA A 153 REMARK 465 GLY A 154 REMARK 465 LYS A 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 136 -100.17 -112.73 REMARK 500 LYS A 170 60.63 62.19 REMARK 500 ASP A 201 -164.78 -106.36 REMARK 500 LYS A 230 -121.74 52.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 619 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 620 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 621 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 622 DISTANCE = 6.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 96 O REMARK 620 2 HOH A 442 O 102.7 REMARK 620 3 ASN A 96 O 0.0 102.7 REMARK 620 4 HOH A 442 O 84.2 84.7 84.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD1 REMARK 620 2 ASP A 105 OD2 49.6 REMARK 620 3 SER A 139 O 122.8 73.5 REMARK 620 4 HOH A 472 O 91.8 115.6 121.4 REMARK 620 5 HOH A 507 O 131.5 150.3 94.2 94.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 240 OH REMARK 620 2 HOH A 528 O 83.7 REMARK 620 3 HOH A 530 O 89.5 96.9 REMARK 620 4 HOH A 494 O 85.0 168.4 85.6 REMARK 620 5 HOH A 610 O 172.5 103.6 91.2 87.6 REMARK 620 6 HOH A 557 O 93.9 77.6 173.2 100.6 86.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 309 DBREF 6ORJ A 6 298 UNP Q8SCZ8 Q8SCZ8_BPDPK 1 293 SEQRES 1 A 293 MSE ASP GLU ALA VAL SER LEU LEU SER ASN MSE GLN ASP SEQRES 2 A 293 SER GLU ILE GLN THR SER GLU PHE ARG LEU TRP SER ILE SEQRES 3 A 293 GLY ARG ALA THR GLU ASN LYS PRO ARG ASN SER PHE THR SEQRES 4 A 293 LEU MSE VAL LEU PRO ILE GLU SER ALA THR ALA THR ASP SEQRES 5 A 293 GLY GLU THR THR PHE ASN PRO VAL GLU GLU VAL VAL ASP SEQRES 6 A 293 GLY VAL ASP ALA ASP GLY ARG ALA TYR THR THR LYS VAL SEQRES 7 A 293 SER VAL SER ARG ASP ILE PRO CYS ILE TRP LEU PRO ASN SEQRES 8 A 293 GLU ASP ASN ARG ALA THR PRO PRO ASP VAL MSE ARG GLY SEQRES 9 A 293 GLU LYS ILE ALA ILE TYR ARG LEU GLY ASP THR SER GLN SEQRES 10 A 293 PHE TYR TRP ARG SER MSE GLY LEU SER ASN ASP LEU ARG SEQRES 11 A 293 THR LEU GLU SER VAL VAL TYR THR PHE ASN ALA SER LEU SEQRES 12 A 293 SER PRO GLY GLY ALA GLY LYS ASN PHE ASP THR CYS TYR SEQRES 13 A 293 PHE MSE GLN PHE SER ALA HIS ASP LYS HIS VAL THR ILE SEQRES 14 A 293 GLY THR SER LYS ALA ASN GLY GLU PRO TYR ARG TYR SER SEQRES 15 A 293 VAL GLN ILE ASN THR GLY THR GLY ALA VAL TYR ILE LEU SEQRES 16 A 293 ASP ASP ILE GLY ASN ARG PHE GLU LEU VAL SER LYS ASP SEQRES 17 A 293 LYS ARG LEU MSE LEU MSE ASN ALA ASP ASN SER PHE VAL SEQRES 18 A 293 LYS VAL GLU LYS LYS ALA ILE ASP LEU ASN ALA ASP GLN SEQRES 19 A 293 TYR ILE LYS LEU THR SER GLY GLY SER THR LEU GLU LEU SEQRES 20 A 293 ASN PRO THR GLU PHE LYS VAL ASN THR THR ASN THR THR SEQRES 21 A 293 ILE LYS SER SER GLY THR HIS ILE GLN GLU ALA GLY GLY SEQRES 22 A 293 THR MSE THR HIS LYS ALA GLY GLY ASN MSE LEU PHE THR SEQRES 23 A 293 ALA PRO ARG TYR ASP PHE THR MODRES 6ORJ MSE A 46 MET MODIFIED RESIDUE MODRES 6ORJ MSE A 107 MET MODIFIED RESIDUE MODRES 6ORJ MSE A 128 MET MODIFIED RESIDUE MODRES 6ORJ MSE A 163 MET MODIFIED RESIDUE MODRES 6ORJ MSE A 217 MET MODIFIED RESIDUE MODRES 6ORJ MSE A 219 MET MODIFIED RESIDUE MODRES 6ORJ MSE A 280 MET MODIFIED RESIDUE MODRES 6ORJ MSE A 288 MET MODIFIED RESIDUE HET MSE A 46 8 HET MSE A 107 8 HET MSE A 128 8 HET MSE A 163 13 HET MSE A 217 13 HET MSE A 219 8 HET MSE A 280 8 HET MSE A 288 8 HET CL A 301 1 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET EDO A 306 4 HET NA A 307 1 HET NA A 308 1 HET NA A 309 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 CL 5(CL 1-) FORMUL 7 EDO C2 H6 O2 FORMUL 8 NA 3(NA 1+) FORMUL 11 HOH *222(H2 O) HELIX 1 AA1 SER A 131 ARG A 135 5 5 SHEET 1 AA1 6 PHE A 26 ALA A 34 0 SHEET 2 AA1 6 LEU A 45 PRO A 49 -1 O LEU A 48 N ARG A 33 SHEET 3 AA1 6 ILE A 89 TRP A 93 -1 O CYS A 91 N LEU A 45 SHEET 4 AA1 6 PHE A 123 SER A 127 1 O TRP A 125 N ILE A 92 SHEET 5 AA1 6 LYS A 111 LEU A 117 -1 N TYR A 115 O TYR A 124 SHEET 6 AA1 6 PHE A 26 ALA A 34 -1 N GLY A 32 O ILE A 112 SHEET 1 AA2 9 SER A 139 ASN A 145 0 SHEET 2 AA2 9 CYS A 160 SER A 166 -1 O TYR A 161 N PHE A 144 SHEET 3 AA2 9 HIS A 171 GLY A 175 -1 O THR A 173 N GLN A 164 SHEET 4 AA2 9 TYR A 186 ASN A 191 -1 O ILE A 190 N VAL A 172 SHEET 5 AA2 9 ALA A 196 ASP A 201 -1 O TYR A 198 N GLN A 189 SHEET 6 AA2 9 ARG A 206 VAL A 210 -1 O PHE A 207 N ILE A 199 SHEET 7 AA2 9 ARG A 215 MSE A 219 -1 O MSE A 219 N ARG A 206 SHEET 8 AA2 9 PHE A 225 GLU A 229 -1 O VAL A 228 N LEU A 216 SHEET 9 AA2 9 ALA A 232 ASN A 236 -1 O ASP A 234 N LYS A 227 SHEET 1 AA3 3 ILE A 241 SER A 245 0 SHEET 2 AA3 3 SER A 248 ASN A 253 -1 O LEU A 250 N LEU A 243 SHEET 3 AA3 3 GLU A 256 ASN A 260 -1 O LYS A 258 N GLU A 251 LINK C LEU A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N VAL A 47 1555 1555 1.33 LINK O ASN A 96 NA NA A 307 1555 1555 2.39 LINK OD1 ASP A 105 NA NA A 309 1555 1555 2.54 LINK OD2 ASP A 105 NA NA A 309 1555 1555 2.67 LINK C VAL A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N ARG A 108 1555 1555 1.33 LINK C SER A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N GLY A 129 1555 1555 1.33 LINK O SER A 139 NA NA A 309 1555 1555 2.52 LINK C PHE A 162 N MSE A 163 1555 1555 1.33 LINK C MSE A 163 N GLN A 164 1555 1555 1.33 LINK C LEU A 216 N MSE A 217 1555 1555 1.33 LINK C MSE A 217 N LEU A 218 1555 1555 1.33 LINK C LEU A 218 N MSE A 219 1555 1555 1.33 LINK C MSE A 219 N ASN A 220 1555 1555 1.33 LINK OH TYR A 240 NA NA A 308 1555 1555 2.31 LINK C THR A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N THR A 281 1555 1555 1.33 LINK C ASN A 287 N MSE A 288 1555 1555 1.33 LINK C MSE A 288 N LEU A 289 1555 1555 1.33 LINK NA NA A 307 O HOH A 442 1555 1555 2.42 LINK NA NA A 308 O HOH A 528 1555 1555 2.43 LINK NA NA A 308 O HOH A 530 1555 1555 2.46 LINK NA NA A 308 O HOH A 494 1555 1555 2.45 LINK NA NA A 308 O HOH A 610 1555 1555 2.41 LINK NA NA A 309 O HOH A 472 1555 1555 2.52 LINK NA NA A 309 O HOH A 507 1555 1555 2.54 LINK O ASN A 96 NA NA A 307 1555 2655 2.39 LINK NA NA A 307 O HOH A 442 1555 2655 2.42 LINK NA NA A 308 O HOH A 557 1555 2655 2.47 SITE 1 AC1 4 TRP A 93 ASN A 96 PRO A 104 HOH A 488 SITE 1 AC2 3 LYS A 227 ASP A 234 HOH A 577 SITE 1 AC3 3 SER A 42 PHE A 43 THR A 44 SITE 1 AC4 3 PHE A 157 ASP A 158 THR A 159 SITE 1 AC5 2 GLN A 122 TYR A 124 SITE 1 AC6 2 ASN A 96 HOH A 442 SITE 1 AC7 6 TYR A 240 HOH A 494 HOH A 528 HOH A 530 SITE 2 AC7 6 HOH A 557 HOH A 610 SITE 1 AC8 4 ASP A 105 SER A 139 HOH A 472 HOH A 507 CRYST1 82.595 82.595 345.930 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012107 0.006990 0.000000 0.00000 SCALE2 0.000000 0.013980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002891 0.00000