HEADER HYDROLASE 30-APR-19 6ORM TITLE CRYSTAL STRUCTURE OF PERUVIANIN-I (CYSTEINE PEPTIDASE FROM THEVETIA TITLE 2 PERUVIANA LATEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERUVIANIN-I; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CYSTEINE PEPTIDASE; COMPND 5 EC: 3.4.22.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THEVETIA PERUVIANA; SOURCE 3 ORGANISM_TAXID: 52862 KEYWDS LATICIFER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.T.CRUZ,E.H.S.BEZERRA,F.M.S.DA SILVA,V.N.FREIRE,M.V.RAMOS, AUTHOR 2 B.A.M.ROCHA,C.D.T.FREITAS REVDAT 4 11-OCT-23 6ORM 1 REMARK REVDAT 3 26-AUG-20 6ORM 1 JRNL HETSYN LINK REVDAT 2 29-JUL-20 6ORM 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 06-MAY-20 6ORM 0 JRNL AUTH W.T.CRUZ,E.H.S.BEZERRA,M.V.RAMOS,B.A.M.ROCHA,M.C.MEDINA, JRNL AUTH 2 D.DEMARCO,C.P.S.CARVALHO,J.S.OLIVEIRA,J.S.SOUSA,P.F.N.SOUZA, JRNL AUTH 3 V.N.FREIRE,F.M.S.DA SILVA,C.D.T.FREITAS JRNL TITL CRYSTAL STRUCTURE AND SPECIFIC LOCATION OF A GERMIN-LIKE JRNL TITL 2 PROTEIN WITH PROTEOLYTIC ACTIVITY FROM THEVETIA PERUVIANA. JRNL REF PLANT SCI. V. 298 10590 2020 JRNL REFN ISSN 0168-9452 JRNL PMID 32771148 JRNL DOI 10.1016/J.PLANTSCI.2020.110590 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6486 - 5.1783 0.99 2911 152 0.1907 0.2139 REMARK 3 2 5.1783 - 4.1115 1.00 2786 121 0.1471 0.1500 REMARK 3 3 4.1115 - 3.5922 1.00 2729 138 0.1710 0.1845 REMARK 3 4 3.5922 - 3.2639 1.00 2703 142 0.1968 0.2152 REMARK 3 5 3.2639 - 3.0301 1.00 2697 126 0.2238 0.2714 REMARK 3 6 3.0301 - 2.8515 1.00 2682 140 0.2332 0.2779 REMARK 3 7 2.8515 - 2.7087 1.00 2673 136 0.2344 0.2738 REMARK 3 8 2.7087 - 2.5908 1.00 2664 138 0.2283 0.2465 REMARK 3 9 2.5908 - 2.4911 1.00 2670 137 0.2433 0.2514 REMARK 3 10 2.4911 - 2.4051 1.00 2628 134 0.2453 0.3012 REMARK 3 11 2.4051 - 2.3299 1.00 2631 153 0.2434 0.2687 REMARK 3 12 2.3299 - 2.2634 1.00 2651 130 0.2480 0.2623 REMARK 3 13 2.2634 - 2.2038 0.99 2627 133 0.2564 0.2393 REMARK 3 14 2.2038 - 2.1500 0.98 2595 138 0.2815 0.3064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4022 REMARK 3 ANGLE : 1.049 5525 REMARK 3 CHIRALITY : 0.058 663 REMARK 3 PLANARITY : 0.005 708 REMARK 3 DIHEDRAL : 5.937 2329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 2:164) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8256 23.7811 -35.5688 REMARK 3 T TENSOR REMARK 3 T11: 0.3072 T22: 0.3268 REMARK 3 T33: 0.3367 T12: -0.0123 REMARK 3 T13: 0.0061 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 2.2516 L22: 1.3403 REMARK 3 L33: 1.9342 L12: 0.2571 REMARK 3 L13: 0.3126 L23: 0.5343 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: -0.0997 S13: 0.2318 REMARK 3 S21: 0.0095 S22: 0.0483 S23: -0.0641 REMARK 3 S31: -0.1892 S32: 0.1433 S33: -0.0883 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 2:161) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6436 11.4876 -24.4470 REMARK 3 T TENSOR REMARK 3 T11: 0.4167 T22: 0.4171 REMARK 3 T33: 0.3349 T12: 0.0402 REMARK 3 T13: -0.0670 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 2.3781 L22: 1.2702 REMARK 3 L33: 1.9571 L12: 0.7818 REMARK 3 L13: 0.9444 L23: 0.7288 REMARK 3 S TENSOR REMARK 3 S11: 0.1960 S12: -0.3682 S13: -0.0839 REMARK 3 S21: 0.3544 S22: 0.0192 S23: -0.1947 REMARK 3 S31: 0.4073 S32: 0.1544 S33: -0.1988 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 2:164) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8562 -3.7926 -40.3570 REMARK 3 T TENSOR REMARK 3 T11: 0.5921 T22: 0.7458 REMARK 3 T33: 0.8264 T12: 0.2763 REMARK 3 T13: -0.2791 T23: -0.3032 REMARK 3 L TENSOR REMARK 3 L11: 1.8963 L22: 1.8172 REMARK 3 L33: 1.4777 L12: 0.1814 REMARK 3 L13: 0.6012 L23: 0.6372 REMARK 3 S TENSOR REMARK 3 S11: 0.1987 S12: 0.2276 S13: -0.5145 REMARK 3 S21: 0.4506 S22: 0.3122 S23: -0.8371 REMARK 3 S31: 0.6135 S32: 0.8460 S33: -0.3380 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ORM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.450 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS V0.73 REMARK 200 DATA SCALING SOFTWARE : AIMLESS V.0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 44.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 22.90 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.92800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V.2.6.0 REMARK 200 STARTING MODEL: 1FI2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.6, 2.0 M SODIUM FORMATE, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.54700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.32100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.32100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.77350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.32100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.32100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.32050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.32100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.32100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.77350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.32100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.32100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 134.32050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.54700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -89.54700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 425 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 1 REMARK 465 ASP A 165 REMARK 465 GLU A 166 REMARK 465 THR A 167 REMARK 465 VAL A 168 REMARK 465 ILE A 169 REMARK 465 ALA A 170 REMARK 465 HIS A 171 REMARK 465 LEU A 172 REMARK 465 LYS A 173 REMARK 465 ALA A 174 REMARK 465 GLN A 175 REMARK 465 TYR A 176 REMARK 465 PRO A 177 REMARK 465 ASN A 178 REMARK 465 VAL A 179 REMARK 465 VAL A 180 REMARK 465 SER A 181 REMARK 465 GLN A 182 REMARK 465 MET A 183 REMARK 465 LEU A 184 REMARK 465 PRO A 185 REMARK 465 SER A 186 REMARK 465 VAL A 187 REMARK 465 ASN A 188 REMARK 465 ASP A 189 REMARK 465 ARG A 190 REMARK 465 ILE A 191 REMARK 465 ASN A 192 REMARK 465 SER A 193 REMARK 465 LYS A 194 REMARK 465 ILE A 195 REMARK 465 PRO A 196 REMARK 465 VAL A 197 REMARK 465 ILE A 198 REMARK 465 LYS A 199 REMARK 465 LEU A 200 REMARK 465 PRO A 201 REMARK 465 LEU A 202 REMARK 465 ARG B 1 REMARK 465 GLY B 162 REMARK 465 LEU B 163 REMARK 465 MET B 164 REMARK 465 ASP B 165 REMARK 465 GLU B 166 REMARK 465 THR B 167 REMARK 465 VAL B 168 REMARK 465 ILE B 169 REMARK 465 ALA B 170 REMARK 465 HIS B 171 REMARK 465 LEU B 172 REMARK 465 LYS B 173 REMARK 465 ALA B 174 REMARK 465 GLN B 175 REMARK 465 TYR B 176 REMARK 465 PRO B 177 REMARK 465 ASN B 178 REMARK 465 VAL B 179 REMARK 465 VAL B 180 REMARK 465 SER B 181 REMARK 465 GLN B 182 REMARK 465 MET B 183 REMARK 465 LEU B 184 REMARK 465 PRO B 185 REMARK 465 SER B 186 REMARK 465 VAL B 187 REMARK 465 ASN B 188 REMARK 465 ASP B 189 REMARK 465 ARG B 190 REMARK 465 ILE B 191 REMARK 465 ASN B 192 REMARK 465 SER B 193 REMARK 465 LYS B 194 REMARK 465 ILE B 195 REMARK 465 PRO B 196 REMARK 465 VAL B 197 REMARK 465 ILE B 198 REMARK 465 LYS B 199 REMARK 465 LEU B 200 REMARK 465 PRO B 201 REMARK 465 LEU B 202 REMARK 465 ARG C 1 REMARK 465 ASP C 165 REMARK 465 GLU C 166 REMARK 465 THR C 167 REMARK 465 VAL C 168 REMARK 465 ILE C 169 REMARK 465 ALA C 170 REMARK 465 HIS C 171 REMARK 465 LEU C 172 REMARK 465 LYS C 173 REMARK 465 ALA C 174 REMARK 465 GLN C 175 REMARK 465 TYR C 176 REMARK 465 PRO C 177 REMARK 465 ASN C 178 REMARK 465 VAL C 179 REMARK 465 VAL C 180 REMARK 465 SER C 181 REMARK 465 GLN C 182 REMARK 465 MET C 183 REMARK 465 LEU C 184 REMARK 465 PRO C 185 REMARK 465 SER C 186 REMARK 465 VAL C 187 REMARK 465 ASN C 188 REMARK 465 ASP C 189 REMARK 465 ARG C 190 REMARK 465 ILE C 191 REMARK 465 ASN C 192 REMARK 465 SER C 193 REMARK 465 LYS C 194 REMARK 465 ILE C 195 REMARK 465 PRO C 196 REMARK 465 VAL C 197 REMARK 465 ILE C 198 REMARK 465 LYS C 199 REMARK 465 LEU C 200 REMARK 465 PRO C 201 REMARK 465 LEU C 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 11 SG CYS A 26 1.54 REMARK 500 SG CYS C 11 SG CYS C 26 1.58 REMARK 500 SG CYS B 11 SG CYS B 26 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 43 CA - CB - CG ANGL. DEV. = -13.7 DEGREES REMARK 500 GLN C 51 CB - CA - C ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 77.24 -162.59 REMARK 500 THR A 69 -4.38 77.55 REMARK 500 GLN A 86 -176.20 64.64 REMARK 500 ASN A 155 73.04 -155.14 REMARK 500 CYS B 11 76.70 -162.75 REMARK 500 THR B 69 -4.59 77.59 REMARK 500 GLN B 86 -179.67 63.79 REMARK 500 ASN B 155 73.02 -155.60 REMARK 500 CYS C 11 75.31 -163.09 REMARK 500 THR C 69 -4.28 77.24 REMARK 500 GLN C 86 -176.60 65.46 REMARK 500 ASN C 155 73.60 -155.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 478 DISTANCE = 6.53 ANGSTROMS DBREF 6ORM A 1 202 PDB 6ORM 6ORM 1 202 DBREF 6ORM B 1 202 PDB 6ORM 6ORM 1 202 DBREF 6ORM C 1 202 PDB 6ORM 6ORM 1 202 SEQRES 1 A 202 ARG ALA ASP PRO GLY PRO LEU GLN ASP PHE CYS LEU ALA SEQRES 2 A 202 ASP LEU ASN SER PRO LEU PHE ILE ASN GLY TYR PRO CYS SEQRES 3 A 202 ARG ASN PRO ALA LEU ALA THR SER ASP ASP PHE ILE TYR SEQRES 4 A 202 SER GLY PHE LYS GLN ALA PRO SER GLY PHE ASP GLN TRP SEQRES 5 A 202 GLY LEU ASN VAL THR PHE VAL THR ALA GLY GLN PHE PRO SEQRES 6 A 202 ALA LEU ASN THR LEU GLY LEU THR ILE ASN ARG CYS VAL SEQRES 7 A 202 LEU LEU PRO GLY GLY SER THR GLN PHE ARG THR ASN PRO SEQRES 8 A 202 ARG ALA SER SER LEU VAL MET ALA THR GLU GLY GLU ILE SEQRES 9 A 202 LEU GLU GLY PHE TYR SER THR ASN ASP ASN GLN LEU TYR SEQRES 10 A 202 VAL LYS ARG LEU THR PRO GLY ASP LEU PHE ILE ILE PRO SEQRES 11 A 202 PRO GLY LEU MET HIS PHE THR VAL ASN VAL GLY THR GLY SEQRES 12 A 202 ASN ALA THR PHE TYR ALA SER LEU ASN SER GLN ASN PRO SEQRES 13 A 202 GLY GLY GLN ILE VAL GLY LEU MET ASP GLU THR VAL ILE SEQRES 14 A 202 ALA HIS LEU LYS ALA GLN TYR PRO ASN VAL VAL SER GLN SEQRES 15 A 202 MET LEU PRO SER VAL ASN ASP ARG ILE ASN SER LYS ILE SEQRES 16 A 202 PRO VAL ILE LYS LEU PRO LEU SEQRES 1 B 202 ARG ALA ASP PRO GLY PRO LEU GLN ASP PHE CYS LEU ALA SEQRES 2 B 202 ASP LEU ASN SER PRO LEU PHE ILE ASN GLY TYR PRO CYS SEQRES 3 B 202 ARG ASN PRO ALA LEU ALA THR SER ASP ASP PHE ILE TYR SEQRES 4 B 202 SER GLY PHE LYS GLN ALA PRO SER GLY PHE ASP GLN TRP SEQRES 5 B 202 GLY LEU ASN VAL THR PHE VAL THR ALA GLY GLN PHE PRO SEQRES 6 B 202 ALA LEU ASN THR LEU GLY LEU THR ILE ASN ARG CYS VAL SEQRES 7 B 202 LEU LEU PRO GLY GLY SER THR GLN PHE ARG THR ASN PRO SEQRES 8 B 202 ARG ALA SER SER LEU VAL MET ALA THR GLU GLY GLU ILE SEQRES 9 B 202 LEU GLU GLY PHE TYR SER THR ASN ASP ASN GLN LEU TYR SEQRES 10 B 202 VAL LYS ARG LEU THR PRO GLY ASP LEU PHE ILE ILE PRO SEQRES 11 B 202 PRO GLY LEU MET HIS PHE THR VAL ASN VAL GLY THR GLY SEQRES 12 B 202 ASN ALA THR PHE TYR ALA SER LEU ASN SER GLN ASN PRO SEQRES 13 B 202 GLY GLY GLN ILE VAL GLY LEU MET ASP GLU THR VAL ILE SEQRES 14 B 202 ALA HIS LEU LYS ALA GLN TYR PRO ASN VAL VAL SER GLN SEQRES 15 B 202 MET LEU PRO SER VAL ASN ASP ARG ILE ASN SER LYS ILE SEQRES 16 B 202 PRO VAL ILE LYS LEU PRO LEU SEQRES 1 C 202 ARG ALA ASP PRO GLY PRO LEU GLN ASP PHE CYS LEU ALA SEQRES 2 C 202 ASP LEU ASN SER PRO LEU PHE ILE ASN GLY TYR PRO CYS SEQRES 3 C 202 ARG ASN PRO ALA LEU ALA THR SER ASP ASP PHE ILE TYR SEQRES 4 C 202 SER GLY PHE LYS GLN ALA PRO SER GLY PHE ASP GLN TRP SEQRES 5 C 202 GLY LEU ASN VAL THR PHE VAL THR ALA GLY GLN PHE PRO SEQRES 6 C 202 ALA LEU ASN THR LEU GLY LEU THR ILE ASN ARG CYS VAL SEQRES 7 C 202 LEU LEU PRO GLY GLY SER THR GLN PHE ARG THR ASN PRO SEQRES 8 C 202 ARG ALA SER SER LEU VAL MET ALA THR GLU GLY GLU ILE SEQRES 9 C 202 LEU GLU GLY PHE TYR SER THR ASN ASP ASN GLN LEU TYR SEQRES 10 C 202 VAL LYS ARG LEU THR PRO GLY ASP LEU PHE ILE ILE PRO SEQRES 11 C 202 PRO GLY LEU MET HIS PHE THR VAL ASN VAL GLY THR GLY SEQRES 12 C 202 ASN ALA THR PHE TYR ALA SER LEU ASN SER GLN ASN PRO SEQRES 13 C 202 GLY GLY GLN ILE VAL GLY LEU MET ASP GLU THR VAL ILE SEQRES 14 C 202 ALA HIS LEU LYS ALA GLN TYR PRO ASN VAL VAL SER GLN SEQRES 15 C 202 MET LEU PRO SER VAL ASN ASP ARG ILE ASN SER LYS ILE SEQRES 16 C 202 PRO VAL ILE LYS LEU PRO LEU HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET FUC E 4 10 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET FUC G 4 10 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG 12(C8 H15 N O6) FORMUL 4 BMA 4(C6 H12 O6) FORMUL 5 FUC 2(C6 H12 O5) FORMUL 10 HOH *228(H2 O) HELIX 1 AA1 ASN A 28 ALA A 32 5 5 HELIX 2 AA2 THR A 33 ASP A 36 5 4 HELIX 3 AA3 SER A 40 GLN A 44 5 5 HELIX 4 AA4 PHE A 64 ASN A 68 5 5 HELIX 5 AA5 ASN B 28 ALA B 32 5 5 HELIX 6 AA6 THR B 33 ASP B 36 5 4 HELIX 7 AA7 SER B 40 GLN B 44 5 5 HELIX 8 AA8 PHE B 64 ASN B 68 5 5 HELIX 9 AA9 ASN C 28 ALA C 32 5 5 HELIX 10 AB1 THR C 33 ILE C 38 5 6 HELIX 11 AB2 SER C 40 GLN C 44 5 5 HELIX 12 AB3 PHE C 64 ASN C 68 5 5 SHEET 1 AA1 6 ILE A 38 TYR A 39 0 SHEET 2 AA1 6 LEU B 126 ILE B 129 -1 O LEU B 126 N TYR A 39 SHEET 3 AA1 6 SER B 95 GLU B 101 -1 N VAL B 97 O PHE B 127 SHEET 4 AA1 6 ALA B 145 LEU B 151 -1 O SER B 150 N LEU B 96 SHEET 5 AA1 6 THR B 73 LEU B 79 -1 N CYS B 77 O PHE B 147 SHEET 6 AA1 6 LEU B 54 THR B 57 -1 N THR B 57 O ARG B 76 SHEET 1 AA2 6 LEU A 54 THR A 57 0 SHEET 2 AA2 6 THR A 73 LEU A 79 -1 O ARG A 76 N THR A 57 SHEET 3 AA2 6 ALA A 145 LEU A 151 -1 O PHE A 147 N CYS A 77 SHEET 4 AA2 6 SER A 95 GLU A 101 -1 N LEU A 96 O SER A 150 SHEET 5 AA2 6 LEU A 126 ILE A 129 -1 O PHE A 127 N VAL A 97 SHEET 6 AA2 6 ILE B 38 TYR B 39 -1 O TYR B 39 N LEU A 126 SHEET 1 AA3 2 PHE A 87 THR A 89 0 SHEET 2 AA3 2 GLN A 159 GLY A 162 -1 O VAL A 161 N PHE A 87 SHEET 1 AA4 3 LEU A 116 LEU A 121 0 SHEET 2 AA4 3 ILE A 104 TYR A 109 -1 N ILE A 104 O LEU A 121 SHEET 3 AA4 3 HIS A 135 ASN A 139 -1 O VAL A 138 N LEU A 105 SHEET 1 AA5 2 ARG B 88 THR B 89 0 SHEET 2 AA5 2 GLN B 159 ILE B 160 -1 O GLN B 159 N THR B 89 SHEET 1 AA6 3 LEU B 116 LEU B 121 0 SHEET 2 AA6 3 ILE B 104 TYR B 109 -1 N ILE B 104 O LEU B 121 SHEET 3 AA6 3 HIS B 135 ASN B 139 -1 O VAL B 138 N LEU B 105 SHEET 1 AA7 5 LEU C 54 VAL C 59 0 SHEET 2 AA7 5 THR C 73 LEU C 79 -1 O ARG C 76 N THR C 57 SHEET 3 AA7 5 ALA C 145 LEU C 151 -1 O ALA C 149 N ASN C 75 SHEET 4 AA7 5 SER C 95 GLU C 101 -1 N LEU C 96 O SER C 150 SHEET 5 AA7 5 LEU C 126 ILE C 129 -1 O PHE C 127 N VAL C 97 SHEET 1 AA8 2 PHE C 87 THR C 89 0 SHEET 2 AA8 2 GLN C 159 GLY C 162 -1 O VAL C 161 N PHE C 87 SHEET 1 AA9 3 LEU C 116 LEU C 121 0 SHEET 2 AA9 3 ILE C 104 TYR C 109 -1 N GLU C 106 O LYS C 119 SHEET 3 AA9 3 HIS C 135 ASN C 139 -1 O VAL C 138 N LEU C 105 LINK ND2 ASN A 55 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 144 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 55 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN B 144 C1 NAG G 1 1555 1555 1.43 LINK ND2 ASN C 55 C1 NAG H 1 1555 1555 1.45 LINK ND2 ASN C 144 C1 NAG I 1 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O3 NAG E 1 C1 FUC E 4 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.45 LINK O3 NAG G 1 C1 FUC G 4 1555 1555 1.45 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.45 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.45 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.46 CRYST1 88.642 88.642 179.094 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011281 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011281 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005584 0.00000