HEADER TRANSFERASE 01-MAY-19 6OS6 TITLE CRYSTAL STRUCTURE OF CYMD PRENYLTRANSFERASE COMPLEXED WITH L- TITLE 2 TRYPTOPHAN AND DMSPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYMD PRENYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALINISPORA ARENICOLA (STRAIN CNS-205); SOURCE 3 ORGANISM_TAXID: 391037; SOURCE 4 STRAIN: CNS-205; SOURCE 5 GENE: SARE_4565; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PRENYLTRANSFERASE, TRYPTOPHAN, INDOLE, BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.W.ROOSE,D.W.CHRISTIANSON REVDAT 5 11-OCT-23 6OS6 1 HETSYN LINK REVDAT 4 01-JAN-20 6OS6 1 REMARK REVDAT 3 02-OCT-19 6OS6 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL SITE ATOM REVDAT 2 14-AUG-19 6OS6 1 JRNL REVDAT 1 17-JUL-19 6OS6 0 JRNL AUTH B.W.ROOSE,D.W.CHRISTIANSON JRNL TITL STRUCTURAL BASIS OF TRYPTOPHAN REVERSE N-PRENYLATION JRNL TITL 2 CATALYZED BY CYMD. JRNL REF BIOCHEMISTRY V. 58 3232 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31251043 JRNL DOI 10.1021/ACS.BIOCHEM.9B00399 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 95019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1253 - 3.1985 1.00 6840 146 0.1628 0.1830 REMARK 3 2 3.1985 - 2.5392 1.00 6718 143 0.1723 0.1653 REMARK 3 3 2.5392 - 2.2184 1.00 6673 145 0.1641 0.1859 REMARK 3 4 2.2184 - 2.0156 1.00 6667 140 0.1591 0.1784 REMARK 3 5 2.0156 - 1.8712 1.00 6657 141 0.1622 0.1691 REMARK 3 6 1.8712 - 1.7609 1.00 6628 141 0.1578 0.1697 REMARK 3 7 1.7609 - 1.6727 1.00 6657 145 0.1561 0.1708 REMARK 3 8 1.6727 - 1.5999 1.00 6626 142 0.1592 0.1814 REMARK 3 9 1.5999 - 1.5383 1.00 6627 143 0.1601 0.1656 REMARK 3 10 1.5383 - 1.4852 1.00 6615 142 0.1673 0.1966 REMARK 3 11 1.4852 - 1.4388 1.00 6632 141 0.1788 0.2031 REMARK 3 12 1.4388 - 1.3977 1.00 6622 142 0.1879 0.2140 REMARK 3 13 1.3977 - 1.3609 1.00 6604 143 0.2023 0.2222 REMARK 3 14 1.3609 - 1.3277 0.97 6460 139 0.2170 0.2501 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6147 -1.9460 34.5718 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.1262 REMARK 3 T33: 0.1290 T12: -0.0001 REMARK 3 T13: 0.0184 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 3.7804 L22: 6.0602 REMARK 3 L33: 4.3018 L12: -4.5705 REMARK 3 L13: -3.5704 L23: 4.6997 REMARK 3 S TENSOR REMARK 3 S11: -0.1918 S12: -0.2589 S13: -0.1597 REMARK 3 S21: 0.3048 S22: 0.0804 S23: 0.1677 REMARK 3 S31: 0.1884 S32: -0.0004 S33: 0.1076 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8244 2.2810 24.6120 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.0788 REMARK 3 T33: 0.1023 T12: 0.0018 REMARK 3 T13: 0.0079 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.1394 L22: 1.2317 REMARK 3 L33: 1.3588 L12: -0.0017 REMARK 3 L13: 0.0388 L23: 0.4369 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.0726 S13: -0.0233 REMARK 3 S21: 0.0496 S22: -0.0214 S23: 0.0656 REMARK 3 S31: 0.0279 S32: -0.0906 S33: 0.0134 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5233 6.7706 14.3803 REMARK 3 T TENSOR REMARK 3 T11: 0.0862 T22: 0.1341 REMARK 3 T33: 0.1160 T12: -0.0158 REMARK 3 T13: -0.0342 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 4.6014 L22: 5.2110 REMARK 3 L33: 2.6936 L12: 0.3389 REMARK 3 L13: -0.6354 L23: -0.8318 REMARK 3 S TENSOR REMARK 3 S11: 0.1170 S12: -0.0276 S13: 0.0429 REMARK 3 S21: -0.1311 S22: 0.0101 S23: 0.4058 REMARK 3 S31: -0.0728 S32: -0.2767 S33: -0.1080 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1902 9.3384 19.0601 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.0889 REMARK 3 T33: 0.0929 T12: 0.0108 REMARK 3 T13: -0.0050 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.3622 L22: 1.3202 REMARK 3 L33: 5.9350 L12: -0.2425 REMARK 3 L13: -2.4344 L23: -0.0332 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: -0.0262 S13: 0.0033 REMARK 3 S21: 0.0042 S22: -0.0090 S23: 0.0968 REMARK 3 S31: -0.1161 S32: -0.2066 S33: -0.0189 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9910 18.7584 5.1603 REMARK 3 T TENSOR REMARK 3 T11: 0.1563 T22: 0.0848 REMARK 3 T33: 0.0744 T12: 0.0189 REMARK 3 T13: -0.0038 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 4.1296 L22: 6.5742 REMARK 3 L33: 2.0818 L12: -4.8535 REMARK 3 L13: -0.5720 L23: -0.1164 REMARK 3 S TENSOR REMARK 3 S11: 0.0904 S12: 0.1364 S13: 0.0259 REMARK 3 S21: -0.2917 S22: -0.1190 S23: -0.0931 REMARK 3 S31: -0.0386 S32: 0.0195 S33: 0.0284 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8493 25.9132 16.8996 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.1302 REMARK 3 T33: 0.1354 T12: 0.0306 REMARK 3 T13: 0.0157 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.6583 L22: 1.2328 REMARK 3 L33: 0.8326 L12: -0.1295 REMARK 3 L13: 0.4302 L23: 0.3657 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0541 S13: 0.1164 REMARK 3 S21: -0.0585 S22: -0.0327 S23: -0.0531 REMARK 3 S31: -0.1605 S32: 0.0409 S33: 0.0292 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7544 27.1398 24.6648 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: 0.1235 REMARK 3 T33: 0.1401 T12: -0.0014 REMARK 3 T13: 0.0234 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.2987 L22: 1.3939 REMARK 3 L33: 1.8711 L12: -0.8331 REMARK 3 L13: 1.0333 L23: -0.0804 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: -0.1149 S13: 0.1429 REMARK 3 S21: -0.0573 S22: -0.0202 S23: -0.1216 REMARK 3 S31: -0.1521 S32: -0.0247 S33: -0.0107 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 271 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.1773 14.4973 31.3817 REMARK 3 T TENSOR REMARK 3 T11: 0.0900 T22: 0.1055 REMARK 3 T33: 0.1076 T12: 0.0099 REMARK 3 T13: 0.0013 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.5890 L22: 0.8930 REMARK 3 L33: 0.9329 L12: -0.1463 REMARK 3 L13: 0.1340 L23: 0.0923 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: -0.0619 S13: 0.0257 REMARK 3 S21: 0.0513 S22: 0.0143 S23: -0.0599 REMARK 3 S31: -0.0124 S32: 0.0310 S33: 0.0061 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 - 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95021 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 29.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.68500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: AUTHOR USED SWISS-MODEL SERVER TO GENERATE A REMARK 200 PHASING MODEL BASED ON THE PROTEIN SEQUENCE. SWISS-MODEL REMARK 200 PRODUCED A PHASING MODEL BASED ON PDB ENTRY 5JXM. AUTHOR USED REMARK 200 THE POLYALA VERSION OF THE MODEL FOR PHASING. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% (W/V) TRYPTONE, 0.05 M HEPES-NA (PH REMARK 280 7.0), 12% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 64.72300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.72300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.88850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 64.72300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.72300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.88850 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 64.72300 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 64.72300 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.88850 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 64.72300 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 64.72300 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.88850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 ALA A 1 REMARK 465 GLY A 364 REMARK 465 GLN A 365 REMARK 465 THR A 366 REMARK 465 THR A 367 REMARK 465 ALA A 368 REMARK 465 ARG A 369 REMARK 465 GLY A 370 REMARK 465 ARG A 371 REMARK 465 THR A 372 REMARK 465 GLU A 373 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LEU A 72 CG CD1 CD2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 251 -76.40 -127.17 REMARK 500 ASP A 267 -97.21 -126.34 REMARK 500 ARG A 333 -72.25 -78.21 REMARK 500 ARG A 333 -72.25 -78.21 REMARK 500 HIS A 347 -136.42 -123.76 REMARK 500 THR A 350 74.98 60.00 REMARK 500 LEU A 354 -50.16 77.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 910 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 911 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 3 OE1 REMARK 620 2 GLU A 3 OE2 54.3 REMARK 620 3 HIS A 126 NE2 29.9 25.9 REMARK 620 4 HIS A 361 NE2 31.1 24.0 2.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 ASP A 50 OD1 95.0 REMARK 620 3 ASP A 50 OD2 83.4 53.3 REMARK 620 4 HIS A 292 ND1 42.7 77.0 42.1 REMARK 620 5 BEZ A 406 O1 148.7 93.7 77.9 111.2 REMARK 620 6 BEZ A 406 O2 98.1 140.5 91.4 87.8 58.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DST A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 406 DBREF 6OS6 A 2 373 UNP A8M6W6 A8M6W6_SALAI 2 373 SEQADV 6OS6 SER A -1 UNP A8M6W6 EXPRESSION TAG SEQADV 6OS6 ASN A 0 UNP A8M6W6 EXPRESSION TAG SEQADV 6OS6 ALA A 1 UNP A8M6W6 EXPRESSION TAG SEQRES 1 A 375 SER ASN ALA THR GLU GLU LEU THR THR VAL ARG ASP ALA SEQRES 2 A 375 CYS ALA ARG THR LEU GLU ASN THR ALA ARG THR LEU HIS SEQRES 3 A 375 LEU GLY ALA SER GLY THR GLU PHE VAL ALA ALA PHE ARG SEQRES 4 A 375 ALA MET THR ASP HIS TRP GLY ALA ALA ARG PRO HIS ASP SEQRES 5 A 375 LEU PRO LEU SER ASP VAL SER PRO ASP GLY SER PRO VAL SEQRES 6 A 375 GLU TYR ALA VAL ASP LEU GLY GLY LEU ALA PRO ALA LEU SEQRES 7 A 375 GLN PHE ALA MET GLU PRO LEU THR ALA GLY VAL PRO ALA SEQRES 8 A 375 ARG ASP PRO LEU ALA ALA ARG ALA ILE MET PRO LEU LEU SEQRES 9 A 375 ALA GLY ARG TYR GLY ALA ASP ALA THR ARG TRP SER ALA SEQRES 10 A 375 LEU ALA ASP ARG LEU LEU PRO ASP ASP ALA HIS GLY PRO SEQRES 11 A 375 HIS VAL SER MET TYR GLY ALA GLU VAL ARG ALA GLY ALA SEQRES 12 A 375 PRO ILE ARG PHE LYS ALA TRP PHE TYR LEU ASN VAL THR SEQRES 13 A 375 GLY PRO ASP GLY ALA PHE ASN LEU LEU TYR SER ALA LEU SEQRES 14 A 375 GLU ARG MET GLY THR THR HIS LEU TRP PRO VAL VAL GLN SEQRES 15 A 375 ALA HIS VAL HIS ARG ALA GLY GLU ASP VAL PRO PHE LEU SEQRES 16 A 375 LEU SER LEU ASP LEU SER ASP ASP PRO ALA ALA ARG VAL SEQRES 17 A 375 LYS VAL TYR PHE ARG HIS PHE ALA ALA ASP VAL GLU GLU SEQRES 18 A 375 VAL ALA ALA VAL LEU LYS ALA TYR PRO GLY PHE GLU PRO SEQRES 19 A 375 GLY GLU VAL ARG ALA PHE CYS LYS VAL MET MET GLY GLY SEQRES 20 A 375 ARG ARG ARG PHE SER ASP GLN PRO ALA VAL THR CYS VAL SEQRES 21 A 375 SER LEU LEU ASP ALA GLN THR PHE ASP ARG THR ALA ALA SEQRES 22 A 375 THR LEU TYR VAL PRO LEU TRP THR TYR ALA GLU HIS ASP SEQRES 23 A 375 GLY GLU VAL ARG GLN ARG VAL HIS ARG THR LEU ALA ALA SEQRES 24 A 375 TRP PRO GLU ALA LEU TYR ARG TYR ASP SER VAL LEU ALA SEQRES 25 A 375 GLY ILE ALA HIS ARG GLY LEU ASP ALA GLY THR GLY ILE SEQRES 26 A 375 HIS ASN TYR ILE SER TRP GLN PRO GLY ARG THR ARG PRO SEQRES 27 A 375 ARG MET LYS VAL TYR LEU SER PRO GLU MET HIS ASP VAL SEQRES 28 A 375 THR PRO PRO PRO LEU GLY VAL SER GLN GLN HIS HIS LEU SEQRES 29 A 375 SER GLY GLN THR THR ALA ARG GLY ARG THR GLU HET DST A 401 23 HET TRP A 402 26 HET ZN A 403 1 HET ZN A 404 1 HET CL A 405 1 HET BEZ A 406 14 HETNAM DST DIMETHYLALLYL S-THIOLODIPHOSPHATE HETNAM TRP TRYPTOPHAN HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM BEZ BENZOIC ACID HETSYN DST DMASPP; DMAPP; DMADP; DIMETHYLALLYL PYROPHOSPHATE; HETSYN 2 DST DIMETHYLALLYL DIPHOSPHATE; ISOPRENYL PYROPHOSPHATE FORMUL 2 DST C5 H12 O6 P2 S FORMUL 3 TRP C11 H12 N2 O2 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 CL CL 1- FORMUL 7 BEZ C7 H6 O2 FORMUL 8 HOH *411(H2 O) HELIX 1 AA1 THR A 7 LEU A 23 1 17 HELIX 2 AA2 LEU A 25 ASP A 41 1 17 HELIX 3 AA3 HIS A 42 GLY A 44 5 3 HELIX 4 AA4 ARG A 47 LEU A 51 5 5 HELIX 5 AA5 PRO A 92 GLY A 107 1 16 HELIX 6 AA6 ALA A 110 LEU A 121 1 12 HELIX 7 AA7 GLY A 158 GLY A 171 1 14 HELIX 8 AA8 THR A 172 HIS A 174 5 3 HELIX 9 AA9 LEU A 175 VAL A 183 1 9 HELIX 10 AB1 ASP A 216 LYS A 225 1 10 HELIX 11 AB2 GLU A 231 MET A 243 1 13 HELIX 12 AB3 LEU A 261 ALA A 263 5 3 HELIX 13 AB4 HIS A 283 ALA A 296 1 14 HELIX 14 AB5 TRP A 298 ALA A 313 1 16 HELIX 15 AB6 GLY A 355 SER A 363 1 9 SHEET 1 AA111 VAL A 63 ASP A 68 0 SHEET 2 AA111 ALA A 75 MET A 80 -1 O GLN A 77 N ALA A 66 SHEET 3 AA111 SER A 131 ARG A 138 -1 O TYR A 133 N MET A 80 SHEET 4 AA111 ARG A 144 TYR A 150 -1 O TRP A 148 N MET A 132 SHEET 5 AA111 ASP A 189 ASP A 197 -1 O LEU A 194 N PHE A 149 SHEET 6 AA111 VAL A 206 HIS A 212 -1 O TYR A 209 N PHE A 192 SHEET 7 AA111 ALA A 254 SER A 259 -1 O THR A 256 N PHE A 210 SHEET 8 AA111 ALA A 271 PRO A 276 -1 O TYR A 274 N VAL A 255 SHEET 9 AA111 HIS A 324 TRP A 329 -1 O ILE A 327 N VAL A 275 SHEET 10 AA111 LYS A 339 LEU A 342 -1 O TYR A 341 N ASN A 325 SHEET 11 AA111 VAL A 63 ASP A 68 -1 N TYR A 65 O LEU A 342 LINK OE1 GLU A 3 ZN ZN A 403 1555 1555 1.88 LINK OE2 GLU A 3 ZN ZN A 403 1555 1555 2.66 LINK NE2 HIS A 49 ZN ZN A 404 1555 1555 2.07 LINK OD1 ASP A 50 ZN ZN A 404 1555 1555 2.01 LINK OD2 ASP A 50 ZN ZN A 404 1555 1555 2.69 LINK NE2 HIS A 126 ZN ZN A 403 1555 8554 2.08 LINK ND1 HIS A 292 ZN ZN A 404 1555 8555 2.07 LINK NE2 HIS A 361 ZN ZN A 403 1555 8554 2.06 LINK ZN ZN A 404 O1 BEZ A 406 1555 1555 2.31 LINK ZN ZN A 404 O2 BEZ A 406 1555 1555 2.15 SITE 1 AC1 15 GLN A 77 ALA A 79 LYS A 146 TRP A 148 SITE 2 AC1 15 ARG A 205 LYS A 207 TYR A 209 TYR A 274 SITE 3 AC1 15 ARG A 337 LYS A 339 TYR A 341 TRP A 402 SITE 4 AC1 15 HOH A 530 HOH A 539 HOH A 541 SITE 1 AC2 11 ASP A 55 VAL A 56 GLU A 64 PHE A 192 SITE 2 AC2 11 TYR A 326 DST A 401 HOH A 527 HOH A 568 SITE 3 AC2 11 HOH A 634 HOH A 646 HOH A 671 SITE 1 AC3 4 GLU A 3 HIS A 126 HIS A 361 CL A 405 SITE 1 AC4 4 HIS A 49 ASP A 50 HIS A 292 BEZ A 406 SITE 1 AC5 5 GLU A 3 HIS A 126 ASN A 152 HIS A 361 SITE 2 AC5 5 ZN A 403 SITE 1 AC6 8 ARG A 47 HIS A 49 ASP A 50 ASP A 157 SITE 2 AC6 8 HIS A 292 ALA A 296 ZN A 404 HOH A 571 CRYST1 129.446 129.446 49.777 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020090 0.00000