HEADER TRANSFERASE/TRANSFERASE INHIBITOR 07-MAY-19 6OVA
TITLE CRYSTAL STRUCTURE OF TYK2 WITH NOVEL PYRROLIDINONE INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 884-1176;
COMPND 5 EC: 2.7.10.2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: TYK2;
SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469
KEYWDS INHIBITOR, COMPLEX, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR R.J.SKENE,I.D.HOFFMAN
REVDAT 2 13-MAR-24 6OVA 1 REMARK
REVDAT 1 12-FEB-20 6OVA 0
JRNL AUTH Y.SASAKI,H.TOKUHARA,Y.OHBA,A.OKABE,M.NAKAYAMA,H.NAKAGAWA,
JRNL AUTH 2 R.SKENE,I.HOFFMAN,H.ZOU,M.YOSHIDA
JRNL TITL EFFICIENT SYNTHESIS OF TERT-BUTYL
JRNL TITL 2 3-CYANO-3-CYCLOPROPYL-2-OXOPYRROLIDINE-4-CARBOXYLATES:
JRNL TITL 3 HIGHLY FUNCTIONALIZED 2-PYRROLIDINONE ENABLING ACCESS TO
JRNL TITL 4 NOVEL MACROCYCLIC TYK2 INHIBITORS.
JRNL REF BIOORG.MED.CHEM.LETT. V. 30 26963 2020
JRNL REFN ESSN 1464-3405
JRNL PMID 31980341
JRNL DOI 10.1016/J.BMCL.2020.126963
REMARK 2
REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0238
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.17
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6
REMARK 3 NUMBER OF REFLECTIONS : 11364
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.200
REMARK 3 R VALUE (WORKING SET) : 0.197
REMARK 3 FREE R VALUE : 0.251
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 574
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57
REMARK 3 REFLECTION IN BIN (WORKING SET) : 542
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.94
REMARK 3 BIN R VALUE (WORKING SET) : 0.4170
REMARK 3 BIN FREE R VALUE SET COUNT : 29
REMARK 3 BIN FREE R VALUE : 0.4200
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2227
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 29
REMARK 3 SOLVENT ATOMS : 50
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.30
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.48000
REMARK 3 B22 (A**2) : 0.48000
REMARK 3 B33 (A**2) : -1.56000
REMARK 3 B12 (A**2) : 0.24000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.531
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.292
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.253
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.673
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2323 ; 0.005 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3146 ; 1.378 ; 1.659
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 6.739 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;36.591 ;21.694
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 401 ;17.453 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;22.181 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.106 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1776 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 888 A 933
REMARK 3 ORIGIN FOR THE GROUP (A): 26.140 -16.325 -5.872
REMARK 3 T TENSOR
REMARK 3 T11: 0.5019 T22: 0.1041
REMARK 3 T33: 0.1866 T12: 0.1374
REMARK 3 T13: -0.0137 T23: -0.0434
REMARK 3 L TENSOR
REMARK 3 L11: 1.1087 L22: 1.2051
REMARK 3 L33: 3.1310 L12: -1.0998
REMARK 3 L13: -0.6636 L23: 1.0678
REMARK 3 S TENSOR
REMARK 3 S11: 0.2146 S12: 0.0735 S13: 0.0864
REMARK 3 S21: -0.2062 S22: -0.1215 S23: -0.0118
REMARK 3 S31: 0.4927 S32: 0.0243 S33: -0.0931
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 942 A 984
REMARK 3 ORIGIN FOR THE GROUP (A): 26.169 -9.905 4.000
REMARK 3 T TENSOR
REMARK 3 T11: 0.3251 T22: 0.1403
REMARK 3 T33: 0.2780 T12: 0.0248
REMARK 3 T13: -0.0054 T23: 0.0020
REMARK 3 L TENSOR
REMARK 3 L11: 0.3387 L22: 0.9502
REMARK 3 L33: 4.3619 L12: -0.4885
REMARK 3 L13: -0.4000 L23: -0.1857
REMARK 3 S TENSOR
REMARK 3 S11: 0.0464 S12: 0.0141 S13: 0.0124
REMARK 3 S21: -0.1943 S22: -0.0724 S23: 0.1043
REMARK 3 S31: 0.0276 S32: 0.2367 S33: 0.0260
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 985 A 1008
REMARK 3 ORIGIN FOR THE GROUP (A): 32.011 -25.645 18.727
REMARK 3 T TENSOR
REMARK 3 T11: 0.6044 T22: 0.4288
REMARK 3 T33: 0.1629 T12: 0.3429
REMARK 3 T13: 0.0037 T23: 0.1703
REMARK 3 L TENSOR
REMARK 3 L11: 2.1466 L22: 0.8525
REMARK 3 L33: 4.8734 L12: 1.3199
REMARK 3 L13: -0.5299 L23: 0.0901
REMARK 3 S TENSOR
REMARK 3 S11: -0.6288 S12: -0.2738 S13: 0.3050
REMARK 3 S21: -0.3603 S22: -0.0486 S23: 0.2561
REMARK 3 S31: 0.9153 S32: 1.4223 S33: 0.6774
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1009 A 1059
REMARK 3 ORIGIN FOR THE GROUP (A): 23.754 -9.534 16.001
REMARK 3 T TENSOR
REMARK 3 T11: 0.3197 T22: 0.1273
REMARK 3 T33: 0.3069 T12: 0.0068
REMARK 3 T13: -0.0167 T23: -0.0444
REMARK 3 L TENSOR
REMARK 3 L11: 0.0351 L22: 0.0977
REMARK 3 L33: 4.7213 L12: 0.0573
REMARK 3 L13: -0.4069 L23: -0.6676
REMARK 3 S TENSOR
REMARK 3 S11: 0.0066 S12: -0.0124 S13: -0.0056
REMARK 3 S21: 0.0031 S22: -0.0403 S23: 0.0190
REMARK 3 S31: -0.1391 S32: 0.1675 S33: 0.0337
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1060 A 1110
REMARK 3 ORIGIN FOR THE GROUP (A): 16.868 -18.359 23.990
REMARK 3 T TENSOR
REMARK 3 T11: 0.3149 T22: 0.3203
REMARK 3 T33: 0.3182 T12: -0.0274
REMARK 3 T13: 0.0035 T23: 0.0180
REMARK 3 L TENSOR
REMARK 3 L11: 0.0135 L22: 0.3778
REMARK 3 L33: 4.5590 L12: -0.0516
REMARK 3 L13: 0.1390 L23: -1.2274
REMARK 3 S TENSOR
REMARK 3 S11: 0.0135 S12: -0.0300 S13: 0.0485
REMARK 3 S21: -0.1882 S22: 0.0744 S23: -0.0835
REMARK 3 S31: 0.5653 S32: -0.5078 S33: -0.0878
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1111 A 1175
REMARK 3 ORIGIN FOR THE GROUP (A): 21.471 -18.215 31.523
REMARK 3 T TENSOR
REMARK 3 T11: 0.2158 T22: 0.3750
REMARK 3 T33: 0.2302 T12: 0.0064
REMARK 3 T13: -0.0140 T23: -0.0662
REMARK 3 L TENSOR
REMARK 3 L11: 0.0247 L22: 0.1725
REMARK 3 L33: 5.4909 L12: -0.0332
REMARK 3 L13: 0.1432 L23: -0.9637
REMARK 3 S TENSOR
REMARK 3 S11: 0.0109 S12: -0.0764 S13: 0.0471
REMARK 3 S21: -0.0628 S22: 0.0401 S23: -0.0065
REMARK 3 S31: 0.3973 S32: -0.0239 S33: -0.0510
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED
REMARK 4
REMARK 4 6OVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-19.
REMARK 100 THE DEPOSITION ID IS D_1000241122.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 06-FEB-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 5.0.3
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.976
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12106
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8
REMARK 200 DATA REDUNDANCY : 9.300
REMARK 200 R MERGE (I) : 0.07800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54
REMARK 200 COMPLETENESS FOR SHELL (%) : 63.7
REMARK 200 DATA REDUNDANCY IN SHELL : 5.60
REMARK 200 R MERGE FOR SHELL (I) : 0.29700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.5.1
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.74
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 5000 MME, AND 100 MM SODIUM
REMARK 280 CITRATE (PH 6.0), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+5/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 158.34167
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 316.68333
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 237.51250
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 395.85417
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.17083
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 158.34167
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 316.68333
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 395.85417
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 237.51250
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 79.17083
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 882
REMARK 465 GLY A 883
REMARK 465 SER A 884
REMARK 465 PRO A 885
REMARK 465 ALA A 886
REMARK 465 SER A 887
REMARK 465 ALA A 934
REMARK 465 ASP A 935
REMARK 465 CYS A 936
REMARK 465 GLY A 937
REMARK 465 PRO A 938
REMARK 465 GLN A 939
REMARK 465 HIS A 940
REMARK 465 ARG A 941
REMARK 465 ASP A 968
REMARK 465 GLN A 969
REMARK 465 GLY A 970
REMARK 465 GLU A 971
REMARK 465 LYS A 972
REMARK 465 GLY A 1113
REMARK 465 ILE A 1114
REMARK 465 TYR A 1176
REMARK 465 HIS A 1177
REMARK 465 HIS A 1178
REMARK 465 HIS A 1179
REMARK 465 HIS A 1180
REMARK 465 HIS A 1181
REMARK 465 HIS A 1182
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A1050 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A1023 41.35 -152.42
REMARK 500 ASP A1041 89.63 38.71
REMARK 500 LYS A1139 1.69 82.63
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue N9G A 1200
DBREF 6OVA A 884 1176 UNP P29597 TYK2_HUMAN 884 1176
SEQADV 6OVA MET A 882 UNP P29597 INITIATING METHIONINE
SEQADV 6OVA GLY A 883 UNP P29597 EXPRESSION TAG
SEQADV 6OVA SER A 1016 UNP P29597 ALA 1016 CONFLICT
SEQADV 6OVA ASN A 1023 UNP P29597 ASP 1023 CONFLICT
SEQADV 6OVA HIS A 1177 UNP P29597 EXPRESSION TAG
SEQADV 6OVA HIS A 1178 UNP P29597 EXPRESSION TAG
SEQADV 6OVA HIS A 1179 UNP P29597 EXPRESSION TAG
SEQADV 6OVA HIS A 1180 UNP P29597 EXPRESSION TAG
SEQADV 6OVA HIS A 1181 UNP P29597 EXPRESSION TAG
SEQADV 6OVA HIS A 1182 UNP P29597 EXPRESSION TAG
SEQRES 1 A 301 MET GLY SER PRO ALA SER ASP PRO THR VAL PHE HIS LYS
SEQRES 2 A 301 ARG TYR LEU LYS LYS ILE ARG ASP LEU GLY GLU GLY HIS
SEQRES 3 A 301 PHE GLY LYS VAL SER LEU TYR CYS TYR ASP PRO THR ASN
SEQRES 4 A 301 ASP GLY THR GLY GLU MET VAL ALA VAL LYS ALA LEU LYS
SEQRES 5 A 301 ALA ASP CYS GLY PRO GLN HIS ARG SER GLY TRP LYS GLN
SEQRES 6 A 301 GLU ILE ASP ILE LEU ARG THR LEU TYR HIS GLU HIS ILE
SEQRES 7 A 301 ILE LYS TYR LYS GLY CYS CYS GLU ASP GLN GLY GLU LYS
SEQRES 8 A 301 SER LEU GLN LEU VAL MET GLU TYR VAL PRO LEU GLY SER
SEQRES 9 A 301 LEU ARG ASP TYR LEU PRO ARG HIS SER ILE GLY LEU ALA
SEQRES 10 A 301 GLN LEU LEU LEU PHE ALA GLN GLN ILE CYS GLU GLY MET
SEQRES 11 A 301 ALA TYR LEU HIS SER GLN HIS TYR ILE HIS ARG ASN LEU
SEQRES 12 A 301 ALA ALA ARG ASN VAL LEU LEU ASP ASN ASP ARG LEU VAL
SEQRES 13 A 301 LYS ILE GLY ASP PHE GLY LEU ALA LYS ALA VAL PRO GLU
SEQRES 14 A 301 GLY HIS GLU TYR TYR ARG VAL ARG GLU ASP GLY ASP SER
SEQRES 15 A 301 PRO VAL PHE TRP TYR ALA PRO GLU CYS LEU LYS GLU TYR
SEQRES 16 A 301 LYS PHE TYR TYR ALA SER ASP VAL TRP SER PHE GLY VAL
SEQRES 17 A 301 THR LEU TYR GLU LEU LEU THR HIS CYS ASP SER SER GLN
SEQRES 18 A 301 SER PRO PRO THR LYS PHE LEU GLU LEU ILE GLY ILE ALA
SEQRES 19 A 301 GLN GLY GLN MET THR VAL LEU ARG LEU THR GLU LEU LEU
SEQRES 20 A 301 GLU ARG GLY GLU ARG LEU PRO ARG PRO ASP LYS CYS PRO
SEQRES 21 A 301 CYS GLU VAL TYR HIS LEU MET LYS ASN CYS TRP GLU THR
SEQRES 22 A 301 GLU ALA SER PHE ARG PRO THR PHE GLU ASN LEU ILE PRO
SEQRES 23 A 301 ILE LEU LYS THR VAL HIS GLU LYS TYR HIS HIS HIS HIS
SEQRES 24 A 301 HIS HIS
HET N9G A1200 29
HETNAM N9G 6-({4-[(3S)-3-CYANO-3-CYCLOPROPYL-2-OXOPYRROLIDIN-1-
HETNAM 2 N9G YL]PYRIDIN-2-YL}AMINO)-N,N-DIMETHYLPYRIDINE-3-
HETNAM 3 N9G CARBOXAMIDE
FORMUL 2 N9G C21 H22 N6 O2
FORMUL 3 HOH *50(H2 O)
HELIX 1 AA1 HIS A 893 ARG A 895 5 3
HELIX 2 AA2 LYS A 945 ARG A 952 1 8
HELIX 3 AA3 LEU A 986 LEU A 990 1 5
HELIX 4 AA4 PRO A 991 HIS A 993 5 3
HELIX 5 AA5 GLY A 996 GLN A 1017 1 22
HELIX 6 AA6 ALA A 1025 ARG A 1027 5 3
HELIX 7 AA7 PRO A 1064 TYR A 1068 5 5
HELIX 8 AA8 ALA A 1069 GLU A 1075 1 7
HELIX 9 AA9 TYR A 1080 THR A 1096 1 17
HELIX 10 AB1 ASP A 1099 GLN A 1102 5 4
HELIX 11 AB2 SER A 1103 LEU A 1111 1 9
HELIX 12 AB3 GLN A 1116 ARG A 1130 1 15
HELIX 13 AB4 PRO A 1141 TRP A 1152 1 12
HELIX 14 AB5 GLU A 1155 ARG A 1159 5 5
HELIX 15 AB6 THR A 1161 LYS A 1175 1 15
SHEET 1 AA1 5 LEU A 897 GLY A 906 0
SHEET 2 AA1 5 GLY A 909 TYR A 916 -1 O CYS A 915 N LYS A 898
SHEET 3 AA1 5 GLU A 925 LEU A 932 -1 O GLU A 925 N TYR A 916
SHEET 4 AA1 5 LEU A 974 GLU A 979 -1 O MET A 978 N ALA A 928
SHEET 5 AA1 5 TYR A 962 CYS A 966 -1 N LYS A 963 O VAL A 977
SHEET 1 AA2 3 GLY A 984 SER A 985 0
SHEET 2 AA2 3 VAL A1029 LEU A1031 -1 O LEU A1031 N GLY A 984
SHEET 3 AA2 3 VAL A1037 ILE A1039 -1 O LYS A1038 N LEU A1030
SHEET 1 AA3 2 TYR A1019 ILE A1020 0
SHEET 2 AA3 2 LYS A1046 ALA A1047 -1 O LYS A1046 N ILE A1020
SHEET 1 AA4 2 TYR A1054 ARG A1056 0
SHEET 2 AA4 2 LYS A1077 TYR A1079 -1 O PHE A1078 N TYR A1055
SITE 1 AC1 15 LEU A 903 GLY A 906 VAL A 911 ALA A 928
SITE 2 AC1 15 LYS A 930 ILE A 960 GLU A 979 TYR A 980
SITE 3 AC1 15 VAL A 981 PRO A 982 GLY A 984 ASP A 988
SITE 4 AC1 15 ARG A1027 ASN A1028 ASP A1041
CRYST1 48.073 48.073 475.025 90.00 90.00 120.00 P 61 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020802 0.012010 0.000000 0.00000
SCALE2 0.000000 0.024020 0.000000 0.00000
SCALE3 0.000000 0.000000 0.002105 0.00000