HEADER ENDOCYTOSIS 07-MAY-19 6OVF TITLE CRYSTAL STRUCTURE OF THE DISABLED-2 (DAB2) DAB HOMOLOGY DOMAIN IN TITLE 2 COMPLEX WITH PEPTIDE STA03 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISABLED HOMOLOG 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADAPTOR MOLECULE DISABLED-2,DIFFERENTIALLY EXPRESSED IN COMPND 5 OVARIAN CARCINOMA 2,DOC-2,DIFFERENTIALLY-EXPRESSED PROTEIN 2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: STA03; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DAB2, DOC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PEPTIDE BINDING, PEPTIDE INHIBITOR, PROTEIN-PROTEIN INTERACTION, KEYWDS 2 ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR M.CHAVEZ,D.R.MADDEN REVDAT 2 11-OCT-23 6OVF 1 REMARK LINK REVDAT 1 13-MAY-20 6OVF 0 JRNL AUTH M.CHAVEZ,D.R.MADDEN JRNL TITL CRYSTAL STRUCTURE OF THE DISABLED-2 (DAB2) DAB HOMOLOGY JRNL TITL 2 DOMAIN IN COMPLEX WITH PEPTIDE STA03 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8501 - 5.7320 1.00 1316 169 0.2018 0.2048 REMARK 3 2 5.7320 - 4.5679 1.00 1259 176 0.1845 0.2005 REMARK 3 3 4.5679 - 3.9958 1.00 1304 93 0.1599 0.1919 REMARK 3 4 3.9958 - 3.6329 1.00 1311 86 0.1564 0.1907 REMARK 3 5 3.6329 - 3.3739 1.00 1228 178 0.1601 0.1963 REMARK 3 6 3.3739 - 3.1758 1.00 1195 179 0.1645 0.1848 REMARK 3 7 3.1758 - 3.0173 1.00 1210 179 0.1640 0.1980 REMARK 3 8 3.0173 - 2.8864 1.00 1371 0 0.1652 0.0000 REMARK 3 9 2.8864 - 2.7756 1.00 1193 180 0.1785 0.2169 REMARK 3 10 2.7756 - 2.6801 1.00 1217 182 0.1864 0.2114 REMARK 3 11 2.6801 - 2.5964 1.00 1195 178 0.1731 0.2146 REMARK 3 12 2.5964 - 2.5224 1.00 1365 20 0.1734 0.2853 REMARK 3 13 2.5224 - 2.4561 1.00 1200 162 0.1832 0.2171 REMARK 3 14 2.4561 - 2.3963 1.00 1189 178 0.1707 0.1942 REMARK 3 15 2.3963 - 2.3419 1.00 1191 178 0.1664 0.1968 REMARK 3 16 2.3419 - 2.2921 1.00 1302 64 0.1714 0.1955 REMARK 3 17 2.2921 - 2.2463 1.00 1251 119 0.1742 0.2094 REMARK 3 18 2.2463 - 2.2040 1.00 1200 181 0.1746 0.2240 REMARK 3 19 2.2040 - 2.1647 1.00 1164 181 0.1723 0.1977 REMARK 3 20 2.1647 - 2.1280 1.00 1277 117 0.1842 0.2401 REMARK 3 21 2.1280 - 2.0937 1.00 1265 64 0.1916 0.2289 REMARK 3 22 2.0937 - 2.0616 1.00 1192 184 0.1884 0.2380 REMARK 3 23 2.0616 - 2.0313 1.00 1192 178 0.2156 0.2630 REMARK 3 24 2.0313 - 2.0027 1.00 1256 95 0.2119 0.2839 REMARK 3 25 2.0027 - 1.9757 1.00 1281 85 0.2107 0.2930 REMARK 3 26 1.9757 - 1.9500 1.00 1176 178 0.2335 0.2752 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2699 REMARK 3 ANGLE : 0.793 3616 REMARK 3 CHIRALITY : 0.057 374 REMARK 3 PLANARITY : 0.005 480 REMARK 3 DIHEDRAL : 4.713 2282 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000239337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.181 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35885 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 19.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.92 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1M7E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM MGCL*6H2O, 5 MM NI(II)CL*6H2O, REMARK 280 0.1 M HEPES PH 7.0, 18% (W/V) PEG3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 385 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 406 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 353 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 359 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 372 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 185 REMARK 465 SER A 186 REMARK 465 LYS A 187 REMARK 465 ALA A 188 REMARK 465 VAL A 189 REMARK 465 GLU A 190 REMARK 465 ASN A 191 REMARK 465 ALA B 185 REMARK 465 SER B 186 REMARK 465 LYS B 187 REMARK 465 ALA B 188 REMARK 465 VAL B 189 REMARK 465 GLU B 190 REMARK 465 ASN B 191 REMARK 465 ACE C 99 REMARK 465 GLN C 100 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 84 CD NE CZ NH1 NH2 REMARK 480 LYS A 179 CG CD CE NZ REMARK 480 LYS A 180 CG CD CE NZ REMARK 480 LYS A 181 CG CD CE NZ REMARK 480 LYS B 179 CG CD CE NZ REMARK 480 LYS B 181 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 86 17.59 -59.95 REMARK 500 GLN B 153 -153.36 -108.64 REMARK 500 ILE B 182 31.11 -89.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 203 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 31 N REMARK 620 2 GLY A 31 O 80.9 REMARK 620 3 GLU A 141 OE1 97.7 66.4 REMARK 620 4 HIS A 144 NE2 95.4 67.9 3.1 REMARK 620 5 HOH A 311 O 99.6 66.9 1.9 4.7 REMARK 620 6 HOH A 350 O 99.4 71.2 4.9 4.7 4.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 59 OD2 REMARK 620 2 GLN A 143 OE1 101.1 REMARK 620 3 HOH A 320 O 87.4 82.0 REMARK 620 4 HOH A 377 O 158.7 86.3 73.8 REMARK 620 5 HOH A 385 O 87.7 40.6 119.6 110.1 REMARK 620 6 HOH A 385 O 87.7 40.6 119.6 110.1 0.0 REMARK 620 7 HOH A 390 O 88.2 107.3 170.3 108.8 68.7 68.7 REMARK 620 8 HOH A 406 O 104.8 21.3 61.6 75.3 61.9 61.9 127.9 REMARK 620 9 HOH A 406 O 104.8 21.3 61.6 75.2 61.9 61.9 127.9 0.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 89 NE2 REMARK 620 2 HOH A 330 O 82.3 REMARK 620 3 HOH A 398 O 95.3 163.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 141 OE1 REMARK 620 2 GLU B 141 OE2 58.3 REMARK 620 3 HOH B 301 O 103.9 55.9 REMARK 620 4 HOH B 304 O 72.4 99.6 84.9 REMARK 620 5 HOH B 305 O 84.1 140.9 156.3 76.2 REMARK 620 6 HOH B 375 O 139.7 142.8 87.1 70.1 73.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 353 O REMARK 620 2 HOH B 353 O 0.0 REMARK 620 3 HOH B 359 O 179.9 179.9 REMARK 620 4 HOH B 359 O 179.9 179.9 0.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 99 and GLN D REMARK 800 100 DBREF 6OVF A 31 191 UNP P98082 DAB2_HUMAN 31 191 DBREF 6OVF B 31 191 UNP P98082 DAB2_HUMAN 31 191 DBREF 6OVF C 99 111 PDB 6OVF 6OVF 99 111 DBREF 6OVF D 99 111 PDB 6OVF 6OVF 99 111 SEQRES 1 A 161 GLY PRO GLU LYS THR ASP GLU TYR LEU LEU ALA ARG PHE SEQRES 2 A 161 LYS GLY ASP GLY VAL LYS TYR LYS ALA LYS LEU ILE GLY SEQRES 3 A 161 ILE ASP ASP VAL PRO ASP ALA ARG GLY ASP LYS MET SER SEQRES 4 A 161 GLN ASP SER MET MET LYS LEU LYS GLY MET ALA ALA ALA SEQRES 5 A 161 GLY ARG SER GLN GLY GLN HIS LYS GLN ARG ILE TRP VAL SEQRES 6 A 161 ASN ILE SER LEU SER GLY ILE LYS ILE ILE ASP GLU LYS SEQRES 7 A 161 THR GLY VAL ILE GLU HIS GLU HIS PRO VAL ASN LYS ILE SEQRES 8 A 161 SER PHE ILE ALA ARG ASP VAL THR ASP ASN ARG ALA PHE SEQRES 9 A 161 GLY TYR VAL CYS GLY GLY GLU GLY GLN HIS GLN PHE PHE SEQRES 10 A 161 ALA ILE LYS THR GLY GLN GLN ALA GLU PRO LEU VAL VAL SEQRES 11 A 161 ASP LEU LYS ASP LEU PHE GLN VAL ILE TYR ASN VAL LYS SEQRES 12 A 161 LYS LYS GLU GLU GLU LYS LYS LYS ILE GLU GLU ALA SER SEQRES 13 A 161 LYS ALA VAL GLU ASN SEQRES 1 B 161 GLY PRO GLU LYS THR ASP GLU TYR LEU LEU ALA ARG PHE SEQRES 2 B 161 LYS GLY ASP GLY VAL LYS TYR LYS ALA LYS LEU ILE GLY SEQRES 3 B 161 ILE ASP ASP VAL PRO ASP ALA ARG GLY ASP LYS MET SER SEQRES 4 B 161 GLN ASP SER MET MET LYS LEU LYS GLY MET ALA ALA ALA SEQRES 5 B 161 GLY ARG SER GLN GLY GLN HIS LYS GLN ARG ILE TRP VAL SEQRES 6 B 161 ASN ILE SER LEU SER GLY ILE LYS ILE ILE ASP GLU LYS SEQRES 7 B 161 THR GLY VAL ILE GLU HIS GLU HIS PRO VAL ASN LYS ILE SEQRES 8 B 161 SER PHE ILE ALA ARG ASP VAL THR ASP ASN ARG ALA PHE SEQRES 9 B 161 GLY TYR VAL CYS GLY GLY GLU GLY GLN HIS GLN PHE PHE SEQRES 10 B 161 ALA ILE LYS THR GLY GLN GLN ALA GLU PRO LEU VAL VAL SEQRES 11 B 161 ASP LEU LYS ASP LEU PHE GLN VAL ILE TYR ASN VAL LYS SEQRES 12 B 161 LYS LYS GLU GLU GLU LYS LYS LYS ILE GLU GLU ALA SER SEQRES 13 B 161 LYS ALA VAL GLU ASN SEQRES 1 C 13 ACE GLN ASN GLY PHE ASP ASN PRO ASN TYR GLN PRO GLN SEQRES 1 D 13 ACE GLN ASN GLY PHE ASP ASN PRO ASN TYR GLN PRO GLN HET ACE D 99 3 HET MG A 201 1 HET NI A 202 1 HET NI A 203 1 HET MG B 201 1 HET MG B 202 1 HETNAM ACE ACETYL GROUP HETNAM MG MAGNESIUM ION HETNAM NI NICKEL (II) ION FORMUL 4 ACE C2 H4 O FORMUL 5 MG 3(MG 2+) FORMUL 6 NI 2(NI 2+) FORMUL 10 HOH *267(H2 O) HELIX 1 AA1 THR A 35 LYS A 44 1 10 HELIX 2 AA2 GLY A 65 GLN A 86 1 22 HELIX 3 AA3 PRO A 117 ASN A 119 5 3 HELIX 4 AA4 ALA A 155 GLU A 184 1 30 HELIX 5 AA5 THR B 35 LYS B 44 1 10 HELIX 6 AA6 GLY B 65 GLN B 86 1 22 HELIX 7 AA7 PRO B 117 ASN B 119 5 3 HELIX 8 AA8 ALA B 155 ILE B 182 1 28 SHEET 1 AA1 8 ILE A 112 HIS A 116 0 SHEET 2 AA1 8 GLY A 101 ASP A 106 -1 N ILE A 104 O HIS A 114 SHEET 3 AA1 8 GLN A 91 SER A 98 -1 N ASN A 96 O LYS A 103 SHEET 4 AA1 8 VAL A 48 ASP A 59 -1 N ALA A 52 O ILE A 93 SHEET 5 AA1 8 GLN A 145 THR A 151 -1 O PHE A 146 N ASP A 58 SHEET 6 AA1 8 ALA A 133 CYS A 138 -1 N PHE A 134 O ILE A 149 SHEET 7 AA1 8 ILE A 121 ARG A 126 -1 N ALA A 125 O GLY A 135 SHEET 8 AA1 8 PHE C 103 ASP C 104 -1 O PHE C 103 N ILE A 124 SHEET 1 AA2 8 ILE B 112 HIS B 116 0 SHEET 2 AA2 8 GLY B 101 ASP B 106 -1 N ILE B 102 O HIS B 116 SHEET 3 AA2 8 GLN B 91 SER B 98 -1 N ASN B 96 O LYS B 103 SHEET 4 AA2 8 VAL B 48 ASP B 59 -1 N ALA B 52 O ILE B 93 SHEET 5 AA2 8 GLN B 145 THR B 151 -1 O LYS B 150 N LYS B 53 SHEET 6 AA2 8 ALA B 133 CYS B 138 -1 N PHE B 134 O ILE B 149 SHEET 7 AA2 8 ILE B 121 ARG B 126 -1 N ALA B 125 O GLY B 135 SHEET 8 AA2 8 PHE D 103 ASP D 104 -1 O PHE D 103 N ILE B 124 LINK C ACE D 99 N GLN D 100 1555 1555 1.34 LINK N GLY A 31 NI NI A 203 1555 3665 2.16 LINK O GLY A 31 NI NI A 203 1555 3665 2.11 LINK OD2 ASP A 59 MG MG A 201 1555 1555 2.20 LINK NE2 HIS A 89 NI NI A 202 1555 1555 2.13 LINK OE1 GLU A 141 NI NI A 203 1555 1555 2.08 LINK OE1 GLN A 143 MG MG A 201 1555 4557 2.29 LINK NE2 HIS A 144 NI NI A 203 1555 1555 2.13 LINK MG MG A 201 O HOH A 320 1555 4557 2.10 LINK MG MG A 201 O HOH A 377 1555 4557 2.29 LINK MG MG A 201 O HOH A 385 1555 1555 2.14 LINK MG MG A 201 O HOH A 385 1555 4557 2.14 LINK MG MG A 201 O HOH A 390 1555 4557 2.24 LINK MG MG A 201 O HOH A 406 1555 1555 2.03 LINK MG MG A 201 O HOH A 406 1555 4557 2.03 LINK NI NI A 202 O HOH A 330 1555 1555 2.01 LINK NI NI A 202 O HOH A 398 1555 1555 2.13 LINK NI NI A 203 O HOH A 311 1555 1555 2.22 LINK NI NI A 203 O HOH A 350 1555 2655 2.02 LINK OE1 GLU B 141 MG MG B 201 1555 1555 1.80 LINK OE2 GLU B 141 MG MG B 201 1555 1555 2.52 LINK MG MG B 201 O HOH B 301 1555 1555 2.14 LINK MG MG B 201 O HOH B 304 1555 1555 2.29 LINK MG MG B 201 O HOH B 305 1555 1555 1.89 LINK MG MG B 201 O HOH B 375 1555 1555 1.81 LINK MG MG B 202 O HOH B 353 1555 1555 2.00 LINK MG MG B 202 O HOH B 353 1555 2655 2.00 LINK MG MG B 202 O HOH B 359 1555 1555 1.85 LINK MG MG B 202 O HOH B 359 1555 3665 1.85 SITE 1 AC1 7 ASP A 59 GLN A 143 HOH A 320 HOH A 377 SITE 2 AC1 7 HOH A 385 HOH A 390 HOH A 406 SITE 1 AC2 3 HIS A 89 HOH A 330 HOH A 398 SITE 1 AC3 5 GLY A 31 GLU A 141 HIS A 144 HOH A 311 SITE 2 AC3 5 HOH A 350 SITE 1 AC4 6 GLU B 141 HIS B 144 HOH B 301 HOH B 304 SITE 2 AC4 6 HOH B 305 HOH B 375 SITE 1 AC5 3 HIS B 89 HOH B 353 HOH B 359 SITE 1 AC6 11 GLU A 33 THR A 35 ARG B 64 GLY B 65 SITE 2 AC6 11 ASP B 66 PHE B 123 ASN D 101 GLY D 102 SITE 3 AC6 11 HOH D 202 HOH D 208 HOH D 209 CRYST1 102.644 102.644 80.202 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009742 0.005625 0.000000 0.00000 SCALE2 0.000000 0.011250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012469 0.00000