HEADER IMMUNE SYSTEM 15-MAY-19 6OZ2 TITLE CRYSTAL STRUCTURE OF THE BROADLY NEUTRALIZING ANTIBODY N49P6 FAB IN TITLE 2 COMPLEX WITH HIV-1 CLADE A/E STRAIN 93TH057 GP120 CORE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLADE A/E 93TH057 HIV-1 GP120 CORE; COMPND 3 CHAIN: G; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: N49P6 ANTIBODY FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: N49P6 ANTIBODY FAB LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: HIV-1 ENV; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL: HEK 293 GNT1-; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL: HEK 293; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL: HEK 293 KEYWDS HIV-1, VRC01-CLASS ANTIBODY, CD4 BINDING SITE, CLADE A/E 93TH057 KEYWDS 2 GP120, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX, N49P6, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.D.TOLBERT,M.PAZGIER REVDAT 4 10-JAN-24 6OZ2 1 REMARK LINK REVDAT 3 11-OCT-23 6OZ2 1 REMARK REVDAT 2 04-AUG-21 6OZ2 1 JRNL REVDAT 1 19-AUG-20 6OZ2 0 JRNL AUTH W.D.TOLBERT,D.N.NGUYEN,Z.R.TEHRANI,M.M.SAJADI,M.PAZGIER JRNL TITL NEAR-PAN-NEUTRALIZING, PLASMA DECONVOLUTED ANTIBODY N49P6 JRNL TITL 2 MIMICS HOST RECEPTOR CD4 IN ITS QUATERNARY INTERACTIONS WITH JRNL TITL 3 THE HIV-1 ENVELOPE TRIMER. JRNL REF MBIO 27421 2021 JRNL REFN ESSN 2150-7511 JRNL PMID 34281393 JRNL DOI 10.1128/MBIO.01274-21 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 31820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3306 - 5.6578 0.89 2824 161 0.1947 0.2233 REMARK 3 2 5.6578 - 4.4940 0.91 2747 152 0.1729 0.2415 REMARK 3 3 4.4940 - 3.9268 0.93 2830 143 0.1811 0.2097 REMARK 3 4 3.9268 - 3.5682 0.94 2803 146 0.2139 0.2675 REMARK 3 5 3.5682 - 3.3127 0.92 2759 140 0.2297 0.3174 REMARK 3 6 3.3127 - 3.1175 0.95 2828 133 0.2393 0.2842 REMARK 3 7 3.1175 - 2.9615 0.96 2851 155 0.2785 0.3935 REMARK 3 8 2.9615 - 2.8326 0.92 2730 136 0.3010 0.3503 REMARK 3 9 2.8326 - 2.7236 0.91 2668 152 0.2974 0.3919 REMARK 3 10 2.7236 - 2.6297 0.91 2704 142 0.3147 0.4072 REMARK 3 11 2.6297 - 2.5475 0.84 2477 139 0.3147 0.3820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6164 REMARK 3 ANGLE : 1.291 8387 REMARK 3 CHIRALITY : 0.070 971 REMARK 3 PLANARITY : 0.007 1078 REMARK 3 DIHEDRAL : 9.350 4018 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'G' AND RESID 43 THROUGH 511) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7881 -9.3021 -12.0161 REMARK 3 T TENSOR REMARK 3 T11: 0.4626 T22: 0.5639 REMARK 3 T33: 0.3439 T12: -0.0084 REMARK 3 T13: -0.0133 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.7528 L22: 1.2664 REMARK 3 L33: 1.1684 L12: 0.2329 REMARK 3 L13: 0.2835 L23: 0.4795 REMARK 3 S TENSOR REMARK 3 S11: -0.0719 S12: -0.1365 S13: 0.0331 REMARK 3 S21: 0.0609 S22: -0.0496 S23: 0.0148 REMARK 3 S31: -0.1642 S32: -0.0484 S33: 0.1037 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'H' AND RESID 2 THROUGH 214) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0096 -42.9653 -30.7775 REMARK 3 T TENSOR REMARK 3 T11: 0.4620 T22: 0.4460 REMARK 3 T33: 0.3104 T12: -0.0266 REMARK 3 T13: 0.0385 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 2.1171 L22: 2.4701 REMARK 3 L33: 0.9336 L12: 1.6738 REMARK 3 L13: 1.1377 L23: 1.2818 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: -0.0639 S13: -0.0311 REMARK 3 S21: 0.0779 S22: -0.0032 S23: 0.0610 REMARK 3 S31: 0.1672 S32: -0.0886 S33: 0.0028 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'L' AND RESID 3 THROUGH 209) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1015 -38.9102 -46.7878 REMARK 3 T TENSOR REMARK 3 T11: 0.4143 T22: 0.4182 REMARK 3 T33: 0.3679 T12: 0.0050 REMARK 3 T13: -0.0074 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 1.2801 L22: 0.7611 REMARK 3 L33: 0.9723 L12: 0.7533 REMARK 3 L13: 0.2909 L23: 0.4161 REMARK 3 S TENSOR REMARK 3 S11: -0.0650 S12: 0.1684 S13: 0.0346 REMARK 3 S21: -0.0984 S22: 0.0773 S23: -0.0008 REMARK 3 S31: -0.0300 S32: -0.0088 S33: -0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.27600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.72700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6BCK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350 0.1 M TRIS-HCL PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.71800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.60700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.40750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.60700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.71800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.40750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL G 42 REMARK 465 ASN G 317 REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 GLY G 324 REMARK 465 GLY G 403 REMARK 465 ASN G 404 REMARK 465 GLU G 405 REMARK 465 THR G 406 REMARK 465 MET G 407 REMARK 465 LYS G 408 REMARK 465 GLY G 409 REMARK 465 GLU G 492 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLN L 1 REMARK 465 SER L 2 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS H 22 SG CYS H 92 1.54 REMARK 500 NH1 ARG H 105 O GLY L 41 1.96 REMARK 500 OE2 GLU G 64 ND2 ASN G 67 2.10 REMARK 500 ND2 ASN G 355 O5 NAG G 511 2.16 REMARK 500 O HOH G 612 O HOH G 617 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS G 378 CB CYS G 378 SG -0.118 REMARK 500 CYS H 140 CB CYS H 140 SG -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS G 378 CA - CB - SG ANGL. DEV. = -11.0 DEGREES REMARK 500 CYS G 395 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 CYS H 92 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 CYS L 23 CA - CB - SG ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP G 57 55.89 -113.35 REMARK 500 PRO G 79 -84.54 -54.04 REMARK 500 THR G 123 -160.62 -128.28 REMARK 500 VAL G 200 114.13 -174.99 REMARK 500 ASP G 211 114.61 -172.20 REMARK 500 PRO G 220 -155.82 -76.36 REMARK 500 GLN G 258 -66.49 65.84 REMARK 500 GLU G 268 -90.00 -122.55 REMARK 500 ILE G 270 136.82 -38.66 REMARK 500 SER G 274 145.08 -174.59 REMARK 500 ASN G 276 121.49 -173.70 REMARK 500 ASN G 289 -61.80 -21.08 REMARK 500 ASN G 355 65.79 36.65 REMARK 500 PHE G 391 60.18 -112.99 REMARK 500 ASN G 411 45.94 -102.39 REMARK 500 GLN G 428 47.11 -91.64 REMARK 500 THR G 430 -109.71 10.72 REMARK 500 ALA H 16 167.68 63.74 REMARK 500 TYR H 32 128.85 76.83 REMARK 500 TYR H 32 128.85 75.80 REMARK 500 ASN H 58 107.19 -163.82 REMARK 500 ALA H 88 -178.56 -170.80 REMARK 500 ARG H 100C 59.59 -92.33 REMARK 500 GLU H 100F 74.42 84.79 REMARK 500 SER H 115 -145.17 115.68 REMARK 500 THR H 116 -90.16 -139.66 REMARK 500 LYS H 117 105.87 74.08 REMARK 500 SER H 127 -114.01 -162.99 REMARK 500 THR H 135 -149.73 -65.00 REMARK 500 ASP H 144 79.37 61.89 REMARK 500 SER H 187 31.41 -84.11 REMARK 500 SER H 188 16.74 -142.03 REMARK 500 THR H 191 -47.99 -131.61 REMARK 500 THR L 5 -88.20 -58.74 REMARK 500 GLN L 6 142.36 77.60 REMARK 500 PHE L 51 -50.80 75.42 REMARK 500 PHE L 91 -124.09 66.13 REMARK 500 PRO L 120 109.67 -49.64 REMARK 500 ASP L 138 42.03 80.47 REMARK 500 ASP L 151 -106.88 53.96 REMARK 500 LYS L 186 35.24 -79.62 REMARK 500 HIS L 188 -19.69 -145.26 REMARK 500 ARG L 189 -27.23 71.79 REMARK 500 GLU L 198 52.64 39.88 REMARK 500 PRO L 208 83.57 -56.22 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6OZ2 G 44 492 UNP A0A0M3KKW9_9HIV1 DBREF2 6OZ2 G A0A0M3KKW9 1 353 DBREF 6OZ2 H 2 214 PDB 6OZ2 6OZ2 2 214 DBREF 6OZ2 L 1 212 PDB 6OZ2 6OZ2 1 212 SEQADV 6OZ2 VAL G 42 UNP A0A0M3KKW EXPRESSION TAG SEQADV 6OZ2 PRO G 43 UNP A0A0M3KKW EXPRESSION TAG SEQADV 6OZ2 SER G 375 UNP A0A0M3KKW HIS 242 ENGINEERED MUTATION SEQRES 1 G 355 VAL PRO VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS SEQRES 2 G 355 ALA SER ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN SEQRES 3 G 355 VAL TRP ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN SEQRES 4 G 355 PRO GLN GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE SEQRES 5 G 355 ASN MET TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU SEQRES 6 G 355 ASP VAL ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS SEQRES 7 G 355 VAL LYS LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS SEQRES 8 G 355 PRO LYS ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS SEQRES 9 G 355 THR PRO ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS SEQRES 10 G 355 ASN PHE ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER SEQRES 11 G 355 VAL GLN CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR SEQRES 12 G 355 GLN LEU LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE SEQRES 13 G 355 ILE ILE ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR SEQRES 14 G 355 ILE ILE VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS SEQRES 15 G 355 THR ARG PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP SEQRES 16 G 355 ILE ARG LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP SEQRES 17 G 355 ASN LYS VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU SEQRES 18 G 355 HIS PHE ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER SEQRES 19 G 355 GLY GLY ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS SEQRES 20 G 355 ARG GLY GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE SEQRES 21 G 355 ASN ASN THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS SEQRES 22 G 355 ASN GLY THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE SEQRES 23 G 355 ILE ASN MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA SEQRES 24 G 355 PRO PRO ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE SEQRES 25 G 355 THR GLY ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN SEQRES 26 G 355 THR SER ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE SEQRES 27 G 355 LYS ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL SEQRES 28 G 355 VAL GLN ILE GLU SEQRES 1 H 229 ALA GLY LEU MET GLN SER GLY ALA VAL MET LYS ASN SER SEQRES 2 H 229 GLY ALA SER VAL ARG VAL SER CYS GLN ALA ASP GLY TYR SEQRES 3 H 229 ASP PHE ILE ASP TYR VAL ILE HIS TRP PHE ARG GLN ARG SEQRES 4 H 229 ARG GLY GLU GLY LEU GLU TRP LEU GLY TRP MET ASN PRO SEQRES 5 H 229 SER GLY GLY GLY THR ASN TYR PRO ARG PRO PHE GLN GLY SEQRES 6 H 229 LYS VAL THR MET THR ARG ASP THR SER THR GLU THR ALA SEQRES 7 H 229 TYR LEU ASP VAL ARG GLY LEU THR TYR ASP ASP THR ALA SEQRES 8 H 229 VAL TYR TYR CYS VAL ARG ASP ARG ALA ASN GLY SER GLY SEQRES 9 H 229 ARG ARG ARG PHE GLU SER VAL ASN TRP PHE LEU ASP LEU SEQRES 10 H 229 TRP GLY ARG GLY THR GLN ILE THR VAL VAL SER ALA SER SEQRES 11 H 229 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 12 H 229 LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 13 H 229 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 14 H 229 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 H 229 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 H 229 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 H 229 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 H 229 VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 1 L 205 GLN SER ALA LEU THR GLN PRO ARG SER VAL SER ALA SER SEQRES 2 L 205 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR HIS SEQRES 3 L 205 ASN TYR VAL SER TRP CYS GLN GLN LYS PRO GLY GLN ALA SEQRES 4 L 205 PRO LYS LEU LEU ILE TYR ASP PHE ASN LYS ARG PRO SER SEQRES 5 L 205 GLY VAL SER ASP ARG PHE SER GLY SER THR SER GLY ASN SEQRES 6 L 205 THR ALA SER LEU THR ILE SER GLY LEU GLN ALA ASP ASP SEQRES 7 L 205 GLU GLY HIS TYR PHE CYS TRP ALA PHE GLU ASN ILE GLY SEQRES 8 L 205 GLY GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA SEQRES 9 L 205 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 10 L 205 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 11 L 205 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 12 L 205 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 13 L 205 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 14 L 205 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SEQRES 15 L 205 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 16 L 205 GLU LYS THR VAL ALA PRO THR GLU CYS SER HET NAG G 501 14 HET NAG G 502 14 HET NAG G 503 14 HET NAG G 504 14 HET NAG G 505 14 HET NAG G 506 14 HET NAG G 507 14 HET NAG G 508 14 HET NAG G 509 14 HET NAG G 510 14 HET NAG G 511 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 11(C8 H15 N O6) FORMUL 15 HOH *39(H2 O) HELIX 1 AA1 GLU G 64 CYS G 74 1 11 HELIX 2 AA2 ASN G 98 LEU G 116 1 19 HELIX 3 AA3 GLY G 335 PHE G 353 1 19 HELIX 4 AA4 ASP G 368 MET G 373 1 6 HELIX 5 AA5 THR G 387 ASN G 392 5 6 HELIX 6 AA6 ASN G 474 TYR G 484 1 11 HELIX 7 AA7 PRO H 60 GLN H 64 5 5 HELIX 8 AA8 SER H 156 ALA H 158 5 3 HELIX 9 AA9 PRO H 185 LEU H 189 5 5 HELIX 10 AB1 GLN L 79 GLU L 83 5 5 HELIX 11 AB2 SER L 121 GLN L 126 1 6 HELIX 12 AB3 THR L 181 LYS L 186 1 6 SHEET 1 AA1 5 LYS G 46 ASP G 47 0 SHEET 2 AA1 5 TYR G 486 GLN G 490 -1 O GLN G 490 N LYS G 46 SHEET 3 AA1 5 TYR G 223 CYS G 228 -1 N LEU G 226 O LYS G 487 SHEET 4 AA1 5 VAL G 242 VAL G 245 -1 O VAL G 245 N ILE G 225 SHEET 5 AA1 5 ILE G 84 HIS G 85 -1 N ILE G 84 O SER G 244 SHEET 1 AA2 3 VAL G 75 PRO G 76 0 SHEET 2 AA2 3 PHE G 53 SER G 56 1 N SER G 56 O VAL G 75 SHEET 3 AA2 3 ILE G 215 CYS G 218 -1 O HIS G 216 N ALA G 55 SHEET 1 AA3 2 GLU G 91 ASN G 92 0 SHEET 2 AA3 2 PRO G 238 CYS G 239 -1 O CYS G 239 N GLU G 91 SHEET 1 AA4 4 ILE G 201 LYS G 202 0 SHEET 2 AA4 4 VAL G 120 LEU G 122 -1 N LYS G 121 O ILE G 201 SHEET 3 AA4 4 GLN G 432 MET G 434 -1 O GLN G 432 N LEU G 122 SHEET 4 AA4 4 ILE G 423 ASN G 425 -1 N ILE G 424 O ALA G 433 SHEET 1 AA5 5 LEU G 259 LEU G 261 0 SHEET 2 AA5 5 ILE G 443 ARG G 456 -1 O GLY G 451 N LEU G 260 SHEET 3 AA5 5 ILE G 284 ARG G 298 -1 N CYS G 296 O CYS G 445 SHEET 4 AA5 5 ASN G 465 PRO G 470 0 SHEET 5 AA5 5 THR G 358 PHE G 361 1 N THR G 358 O GLU G 466 SHEET 1 AA6 7 ILE G 271 ARG G 273 0 SHEET 2 AA6 7 ILE G 284 ARG G 298 -1 O HIS G 287 N ILE G 271 SHEET 3 AA6 7 ILE G 443 ARG G 456 -1 O CYS G 445 N CYS G 296 SHEET 4 AA6 7 LYS G 328 ASN G 334 0 SHEET 5 AA6 7 THR G 413 LYS G 421 -1 O ILE G 414 N ILE G 333 SHEET 6 AA6 7 GLU G 381 CYS G 385 -1 N PHE G 382 O LYS G 421 SHEET 7 AA6 7 HIS G 374 CYS G 378 -1 N CYS G 378 O GLU G 381 SHEET 1 AA7 4 GLY H 3 GLN H 6 0 SHEET 2 AA7 4 GLY H 15 ASP H 25 -1 O GLN H 23 N MET H 5 SHEET 3 AA7 4 THR H 77 LEU H 82C-1 O LEU H 82C N GLY H 15 SHEET 4 AA7 4 VAL H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AA8 6 VAL H 10 LYS H 12 0 SHEET 2 AA8 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA8 6 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA8 6 VAL H 33 GLN H 39 -1 N PHE H 37 O TYR H 91 SHEET 5 AA8 6 LEU H 45 ASN H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA8 6 GLY H 56 ASN H 58 -1 O GLY H 56 N ASN H 52 SHEET 1 AA9 4 VAL H 10 LYS H 12 0 SHEET 2 AA9 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA9 4 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA9 4 LEU H 100L TRP H 103 -1 O LEU H 102 N ARG H 94 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 ALA H 136 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AB1 4 TYR H 176 VAL H 184 -1 O TYR H 176 N TYR H 145 SHEET 4 AB1 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB2 4 SER H 120 LEU H 124 0 SHEET 2 AB2 4 ALA H 136 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AB2 4 TYR H 176 VAL H 184 -1 O TYR H 176 N TYR H 145 SHEET 4 AB2 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB3 3 THR H 151 TRP H 154 0 SHEET 2 AB3 3 TYR H 194 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AB3 3 THR H 205 VAL H 211 -1 O LYS H 209 N CYS H 196 SHEET 1 AB4 5 SER L 9 ALA L 13 0 SHEET 2 AB4 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AB4 5 GLY L 84 ALA L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AB4 5 SER L 34 GLN L 38 -1 N GLN L 38 O HIS L 85 SHEET 5 AB4 5 LYS L 45 ILE L 48 -1 O ILE L 48 N TRP L 35 SHEET 1 AB5 4 SER L 9 ALA L 13 0 SHEET 2 AB5 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AB5 4 GLY L 84 ALA L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AB5 4 ASN L 97 ILE L 98 -1 O ASN L 97 N ALA L 90 SHEET 1 AB6 3 VAL L 19 THR L 24 0 SHEET 2 AB6 3 THR L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 3 AB6 3 PHE L 62 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 AB7 4 SER L 114 PHE L 118 0 SHEET 2 AB7 4 ALA L 130 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB7 4 TYR L 172 LEU L 180 -1 O TYR L 172 N PHE L 139 SHEET 4 AB7 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB8 4 SER L 114 PHE L 118 0 SHEET 2 AB8 4 ALA L 130 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB8 4 TYR L 172 LEU L 180 -1 O TYR L 172 N PHE L 139 SHEET 4 AB8 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB9 4 SER L 153 PRO L 154 0 SHEET 2 AB9 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB9 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AB9 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.05 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.06 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.08 SSBOND 4 CYS G 228 CYS G 239 1555 1555 2.04 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.05 SSBOND 6 CYS G 378 CYS G 445 1555 1555 1.94 SSBOND 7 CYS G 385 CYS G 418 1555 1555 2.04 SSBOND 8 CYS G 395 CYS G 410 1555 1555 2.10 SSBOND 9 CYS H 140 CYS H 196 1555 1555 2.10 SSBOND 10 CYS L 23 CYS L 88 1555 1555 2.08 SSBOND 11 CYS L 134 CYS L 193 1555 1555 2.06 LINK ND2 ASN G 234 C1 NAG G 501 1555 1555 1.44 LINK ND2 ASN G 241 C1 NAG G 502 1555 1555 1.43 LINK ND2 ASN G 262 C1 NAG G 503 1555 1555 1.44 LINK ND2 ASN G 276 C1 NAG G 504 1555 1555 1.46 LINK ND2 ASN G 289 C1 NAG G 505 1555 1555 1.44 LINK ND2 ASN G 295 C1 NAG G 506 1555 1555 1.43 LINK ND2 ASN G 334 C1 NAG G 507 1555 1555 1.44 LINK ND2 ASN G 355 C1 NAG G 511 1555 1555 1.44 LINK ND2 ASN G 386 C1 NAG G 508 1555 1555 1.44 LINK ND2 ASN G 392 C1 NAG G 509 1555 1555 1.45 LINK ND2 ASN G 448 C1 NAG G 510 1555 1555 1.45 CISPEP 1 PHE H 146 PRO H 147 0 0.56 CISPEP 2 GLU H 148 PRO H 149 0 4.10 CISPEP 3 TYR L 140 PRO L 141 0 -4.38 CRYST1 65.436 80.815 195.214 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005123 0.00000