HEADER BIOSYNTHETIC PROTEIN 16-MAY-19 6OZV TITLE THE STRUCTURE OF CONDENSATION AND ADENYLATION DOMAINS OF TEIXOBACTIN- TITLE 2 PRODUCING NONRIBOSOMAL PEPTIDE SYNTHETASE TXO1 SERINE MODULE IN TITLE 3 COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TXO1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CONDENSATION AND ADENYLATION DOMAIN (UNP RESIDUES 2140- COMPND 5 3009); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ELEFTHERIA TERRAE; SOURCE 3 ORGANISM_TAXID: 1597781; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: PGRO7-K CELL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS NONRIBOSOMAL PEPTIDE SYNTHETASE, TEIXOBACTIN, TXO1, CONDENSATION KEYWDS 2 DOMAIN, ADENYLATION DOMAIN, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, BIOSYNTHETIC KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.ZHOU,R.JEDRZEJCZAK,G.BABNIGG,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 11-OCT-23 6OZV 1 REMARK REVDAT 3 25-MAR-20 6OZV 1 JRNL REVDAT 2 18-DEC-19 6OZV 1 REMARK REVDAT 1 29-MAY-19 6OZV 0 JRNL AUTH K.TAN,M.ZHOU,R.P.JEDRZEJCZAK,R.WU,R.A.HIGUERA,D.BOREK, JRNL AUTH 2 G.BABNIGG,A.JOACHIMIAK JRNL TITL STRUCTURES OF TEIXOBACTIN-PRODUCING NONRIBOSOMAL PEPTIDE JRNL TITL 2 SYNTHETASE CONDENSATION AND ADENYLATION DOMAINS. JRNL REF CURR RES STRUCT BIOL V. 2 14 2020 JRNL REFN ESSN 2665-928X JRNL DOI 10.1016/J.CRSTBI.2020.01.002 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.1 REMARK 3 NUMBER OF REFLECTIONS : 57192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0284 - 5.9139 0.99 3282 178 0.1879 0.2080 REMARK 3 2 5.9139 - 4.6954 0.99 3226 147 0.1658 0.1892 REMARK 3 3 4.6954 - 4.1023 0.99 3221 171 0.1494 0.1617 REMARK 3 4 4.1023 - 3.7274 1.00 3221 177 0.1595 0.1958 REMARK 3 5 3.7274 - 3.4603 0.98 3162 184 0.1796 0.2142 REMARK 3 6 3.4603 - 3.2563 0.99 3227 152 0.1856 0.2177 REMARK 3 7 3.2563 - 3.0933 0.99 3230 134 0.2035 0.1978 REMARK 3 8 3.0933 - 2.9587 1.00 3213 172 0.2002 0.2260 REMARK 3 9 2.9587 - 2.8448 1.00 3184 179 0.2164 0.2996 REMARK 3 10 2.8448 - 2.7466 0.97 3157 140 0.2208 0.2185 REMARK 3 11 2.7466 - 2.6608 0.94 3026 163 0.2193 0.2557 REMARK 3 12 2.6608 - 2.5847 0.89 2845 158 0.2217 0.2535 REMARK 3 13 2.5847 - 2.5167 0.83 2686 126 0.2245 0.2850 REMARK 3 14 2.5167 - 2.4553 0.78 2508 139 0.2256 0.2749 REMARK 3 15 2.4553 - 2.3995 0.73 2341 141 0.2254 0.2210 REMARK 3 16 2.3995 - 2.3484 0.67 2143 121 0.2243 0.2638 REMARK 3 17 2.3484 - 2.3014 0.61 1978 90 0.2225 0.2432 REMARK 3 18 2.3014 - 2.2580 0.54 1756 91 0.2244 0.2369 REMARK 3 19 2.2580 - 2.2177 0.49 1562 85 0.2203 0.2614 REMARK 3 20 2.2177 - 2.1801 0.44 1414 62 0.2306 0.2838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6573 REMARK 3 ANGLE : 0.512 8966 REMARK 3 CHIRALITY : 0.038 992 REMARK 3 PLANARITY : 0.003 1180 REMARK 3 DIHEDRAL : 21.256 3899 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2140 THROUGH 2214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2665 -76.3516 49.1740 REMARK 3 T TENSOR REMARK 3 T11: 1.2272 T22: 1.2964 REMARK 3 T33: 0.8385 T12: 0.4059 REMARK 3 T13: 0.3314 T23: 0.2229 REMARK 3 L TENSOR REMARK 3 L11: 1.4465 L22: 0.7745 REMARK 3 L33: 1.1607 L12: 0.7901 REMARK 3 L13: 0.2105 L23: 0.7363 REMARK 3 S TENSOR REMARK 3 S11: 0.0580 S12: 0.3133 S13: -0.2788 REMARK 3 S21: 0.1239 S22: -0.5551 S23: -0.4192 REMARK 3 S31: 1.7441 S32: 0.7661 S33: 0.4702 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2215 THROUGH 2272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9972 -83.9697 42.1989 REMARK 3 T TENSOR REMARK 3 T11: 1.3893 T22: 1.0848 REMARK 3 T33: 0.8155 T12: 0.3518 REMARK 3 T13: 0.2469 T23: 0.1192 REMARK 3 L TENSOR REMARK 3 L11: 0.3973 L22: 8.0052 REMARK 3 L33: 3.2151 L12: -0.2546 REMARK 3 L13: -0.0383 L23: 4.8395 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: 0.3890 S13: -0.7618 REMARK 3 S21: -0.1216 S22: 0.2641 S23: -0.3634 REMARK 3 S31: 1.4638 S32: -0.2075 S33: 0.1180 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2273 THROUGH 2367 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1722 -62.7698 45.9483 REMARK 3 T TENSOR REMARK 3 T11: 0.4873 T22: 1.3635 REMARK 3 T33: 0.6506 T12: 0.2081 REMARK 3 T13: -0.0239 T23: 0.3931 REMARK 3 L TENSOR REMARK 3 L11: 1.1123 L22: 0.5460 REMARK 3 L33: 2.4837 L12: 0.1371 REMARK 3 L13: 0.9573 L23: -0.4451 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: -0.5387 S13: -0.3736 REMARK 3 S21: 0.1478 S22: -0.3267 S23: -0.4506 REMARK 3 S31: 0.5293 S32: 1.2074 S33: 0.1535 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2368 THROUGH 2589 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8647 -54.0670 31.8118 REMARK 3 T TENSOR REMARK 3 T11: 0.2500 T22: 1.0006 REMARK 3 T33: 0.5276 T12: -0.0045 REMARK 3 T13: -0.0578 T23: 0.3204 REMARK 3 L TENSOR REMARK 3 L11: 1.7054 L22: 0.9726 REMARK 3 L33: 2.4142 L12: -0.7108 REMARK 3 L13: -0.0145 L23: -0.5990 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: -0.6820 S13: -0.1452 REMARK 3 S21: 0.0796 S22: -0.4154 S23: -0.4742 REMARK 3 S31: 0.0372 S32: 1.2669 S33: 0.3003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2590 THROUGH 2797 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.6935 -27.7051 -5.1165 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.1391 REMARK 3 T33: 0.1694 T12: 0.0327 REMARK 3 T13: -0.0292 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 1.4435 L22: 3.1073 REMARK 3 L33: 0.9955 L12: -0.1311 REMARK 3 L13: 0.3271 L23: -0.5414 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.1154 S13: 0.0667 REMARK 3 S21: -0.1421 S22: -0.0311 S23: 0.1115 REMARK 3 S31: -0.0376 S32: -0.0136 S33: -0.0327 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2798 THROUGH 3002 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3109 -40.9771 10.1469 REMARK 3 T TENSOR REMARK 3 T11: 0.1923 T22: 0.1022 REMARK 3 T33: 0.1678 T12: 0.0114 REMARK 3 T13: -0.0204 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 2.6932 L22: 0.9292 REMARK 3 L33: 0.8907 L12: 0.3949 REMARK 3 L13: 0.0438 L23: -0.3145 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: -0.1736 S13: -0.0371 REMARK 3 S21: 0.0446 S22: -0.0908 S23: 0.0256 REMARK 3 S31: 0.0023 S32: 0.0609 S33: 0.0253 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65631 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: PDB ENTRY 6OYF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES/SOLDIUM CHLORIDE, 1.26 M REMARK 280 AMMONIUM SULFATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.33500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.42950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.33500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.42950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A3379 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2137 REMARK 465 ASN A 2138 REMARK 465 ALA A 2139 REMARK 465 LEU A 2255 REMARK 465 GLY A 2256 REMARK 465 ALA A 2257 REMARK 465 GLY A 2294 REMARK 465 THR A 2295 REMARK 465 ALA A 2296 REMARK 465 ASP A 2300 REMARK 465 PRO A 2301 REMARK 465 LEU A 2302 REMARK 465 PRO A 2494 REMARK 465 PRO A 2495 REMARK 465 HIS A 2496 REMARK 465 ALA A 2497 REMARK 465 LEU A 2498 REMARK 465 GLN A 2499 REMARK 465 MET A 2500 REMARK 465 SER A 2501 REMARK 465 PRO A 2502 REMARK 465 LEU A 2503 REMARK 465 ARG A 2504 REMARK 465 ALA A 2505 REMARK 465 ARG A 2506 REMARK 465 PRO A 2507 REMARK 465 LEU A 2508 REMARK 465 ALA A 2509 REMARK 465 HIS A 3003 REMARK 465 GLN A 3004 REMARK 465 VAL A 3005 REMARK 465 LYS A 3006 REMARK 465 ILE A 3007 REMARK 465 ARG A 3008 REMARK 465 GLY A 3009 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A2153 OE1 NE2 REMARK 470 SER A2155 OG REMARK 470 ARG A2156 CG CD NE CZ NH1 NH2 REMARK 470 GLU A2157 CG CD OE1 OE2 REMARK 470 SER A2159 OG REMARK 470 LEU A2168 CG CD1 CD2 REMARK 470 ARG A2169 CG CD NE CZ NH1 NH2 REMARK 470 LEU A2170 CG CD1 CD2 REMARK 470 ARG A2171 CG CD NE CZ NH1 NH2 REMARK 470 GLU A2173 CG CD OE1 OE2 REMARK 470 LEU A2174 CG CD1 CD2 REMARK 470 LEU A2179 CG CD1 CD2 REMARK 470 ARG A2180 CG CD NE CZ NH1 NH2 REMARK 470 ARG A2185 CG CD NE CZ NH1 NH2 REMARK 470 ILE A2186 CG1 CG2 CD1 REMARK 470 ARG A2196 CG CD NE CZ NH1 NH2 REMARK 470 GLU A2201 CG CD OE1 OE2 REMARK 470 ILE A2208 CG1 CG2 CD1 REMARK 470 GLU A2211 CG CD OE1 OE2 REMARK 470 ARG A2213 CG CD NE CZ NH1 NH2 REMARK 470 GLN A2219 CG CD OE1 NE2 REMARK 470 LEU A2221 CG CD1 CD2 REMARK 470 GLU A2222 CG CD OE1 OE2 REMARK 470 GLU A2224 CG CD OE1 OE2 REMARK 470 GLU A2227 CG CD OE1 OE2 REMARK 470 HIS A2230 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A2233 CG CD OE1 NE2 REMARK 470 GLU A2235 CG CD OE1 OE2 REMARK 470 ARG A2237 CG CD NE CZ NH1 NH2 REMARK 470 LEU A2242 CG CD1 CD2 REMARK 470 LYS A2254 CG CD CE NZ REMARK 470 GLN A2258 CG CD OE1 NE2 REMARK 470 GLU A2259 CG CD OE1 OE2 REMARK 470 VAL A2261 CG1 CG2 REMARK 470 LEU A2262 CG CD1 CD2 REMARK 470 LEU A2283 CG CD1 CD2 REMARK 470 ARG A2288 CG CD NE CZ NH1 NH2 REMARK 470 GLU A2293 CG CD OE1 OE2 REMARK 470 LEU A2305 CG CD1 CD2 REMARK 470 GLN A2308 CG CD OE1 NE2 REMARK 470 LYS A2473 CG CD CE NZ REMARK 470 GLU A2491 CG CD OE1 OE2 REMARK 470 VAL A2511 CG1 CG2 REMARK 470 ARG A2597 CG CD NE CZ NH1 NH2 REMARK 470 ASP A3002 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A2174 96.14 -62.33 REMARK 500 ASP A2175 68.00 -117.34 REMARK 500 GLU A2201 71.96 61.43 REMARK 500 ALA A2210 -75.91 -92.31 REMARK 500 GLN A2219 -157.23 -150.25 REMARK 500 GLU A2220 113.76 -176.96 REMARK 500 GLU A2224 -95.48 -94.78 REMARK 500 ASP A2272 -159.40 -161.89 REMARK 500 SER A2344 46.93 -98.05 REMARK 500 ARG A2415 60.04 -110.57 REMARK 500 GLU A2475 84.39 -62.98 REMARK 500 VAL A2483 -52.04 70.99 REMARK 500 SER A2492 -169.41 -104.26 REMARK 500 ASP A2529 5.75 -65.67 REMARK 500 VAL A2586 -60.71 -105.46 REMARK 500 ASP A2649 -6.86 72.63 REMARK 500 SER A2756 -117.33 -146.57 REMARK 500 CYS A2859 49.93 -88.58 REMARK 500 THR A2899 75.02 59.67 REMARK 500 VAL A2900 -75.75 71.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3476 DISTANCE = 5.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 3101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 3102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 3103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 3104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 3105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 3106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP95646 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 6OYF RELATED DB: PDB REMARK 900 WILD TYPE TXO1 DBREF1 6OZV A 2140 3009 UNP A0A0B5GUD2_9BURK DBREF2 6OZV A A0A0B5GUD2 2140 3009 SEQADV 6OZV SER A 2137 UNP A0A0B5GUD EXPRESSION TAG SEQADV 6OZV ASN A 2138 UNP A0A0B5GUD EXPRESSION TAG SEQADV 6OZV ALA A 2139 UNP A0A0B5GUD EXPRESSION TAG SEQRES 1 A 873 SER ASN ALA PRO LEU SER PHE ALA GLN GLN ARG LEU TRP SEQRES 2 A 873 PHE ILE ALA GLN MET SER ARG GLU ALA SER GLY ALA TYR SEQRES 3 A 873 HIS VAL PRO GLY GLY LEU ARG LEU ARG GLY GLU LEU ASP SEQRES 4 A 873 GLU VAL ALA LEU ARG ALA ALA LEU ASP ARG ILE MET ALA SEQRES 5 A 873 ARG HIS GLU VAL LEU ARG THR ARG PHE GLU TRP HIS GLU SEQRES 6 A 873 GLY GLU PRO VAL GLN CYS ILE ASP ALA GLU ALA ARG PHE SEQRES 7 A 873 PRO LEU VAL ARG GLN GLU LEU GLU GLY GLU ALA ALA GLU SEQRES 8 A 873 LEU ALA HIS TRP GLN GLN VAL GLU ALA ARG SER PRO PHE SEQRES 9 A 873 ASP LEU GLY THR GLY PRO LEU ILE ARG GLY ARG LEU LEU SEQRES 10 A 873 LYS LEU GLY ALA GLN GLU HIS VAL LEU LEU LEU THR MET SEQRES 11 A 873 HIS HIS ILE VAL SER ASP GLY TRP SER MET SER VAL LEU SEQRES 12 A 873 ALA HIS GLU LEU GLY THR LEU TYR ARG ALA TYR ALA GLN SEQRES 13 A 873 GLU GLY THR ALA PRO GLU VAL ASP PRO LEU PRO ALA LEU SEQRES 14 A 873 PRO LEU GLN TYR ALA ASP TYR ALA LEU TRP GLN ARG ARG SEQRES 15 A 873 TRP LEU ASP GLY GLU ARG GLN GLN ARG GLN LEU ALA TYR SEQRES 16 A 873 TRP GLN GLN GLN LEU ALA GLY ALA PRO ALA LEU VAL SER SEQRES 17 A 873 LEU PRO THR ASP ARG PRO ARG PRO ALA LEU GLN ASP TYR SEQRES 18 A 873 ARG GLY ASP SER ILE GLU LEU THR PHE ASP ALA GLY LEU SEQRES 19 A 873 SER GLN GLY LEU ARG ALA LEU SER GLN ARG HIS GLY THR SEQRES 20 A 873 THR LEU TYR MET THR VAL LEU ALA ALA TRP ALA ALA LEU SEQRES 21 A 873 VAL ALA ARG LEU ALA GLY GLN PRO GLU VAL VAL ILE GLY SEQRES 22 A 873 THR PRO VAL ALA ASN ARG GLN ARG ALA GLU LEU GLU GLY SEQRES 23 A 873 LEU ILE GLY PHE PHE VAL ASN THR LEU ALA LEU ARG VAL SEQRES 24 A 873 ASP LEU GLY GLY GLU PRO SER VAL ALA GLY LEU LEU ALA SEQRES 25 A 873 GLN VAL ARG GLU ARG VAL LEU ALA ALA GLN SER HIS GLN SEQRES 26 A 873 ASP LEU PRO PHE GLU GLN VAL VAL GLU ALA LEU LYS PRO SEQRES 27 A 873 GLU ARG SER LEU SER HIS SER PRO VAL PHE GLN LEU MET SEQRES 28 A 873 LEU SER TRP GLU SER SER PRO PRO HIS ALA LEU GLN MET SEQRES 29 A 873 SER PRO LEU ARG ALA ARG PRO LEU ALA PRO VAL ARG GLU SEQRES 30 A 873 ARG SER ALA GLN PHE ASP LEU SER LEU HIS LEU HIS GLU SEQRES 31 A 873 ALA ALA ASP GLY THR VAL ALA GLY SER LEU THR TYR ALA SEQRES 32 A 873 SER ALA LEU TYR GLU ARG GLU THR VAL GLN ARG HIS ALA SEQRES 33 A 873 GLY TYR LEU LYS ALA LEU LEU ALA GLY MET VAL ALA ASP SEQRES 34 A 873 ASP THR GLN PRO VAL GLN ARG ILE GLY ILE LEU GLY GLU SEQRES 35 A 873 ALA GLU ARG HIS ARG LEU LEU VAL GLU TRP ASN ASP THR SEQRES 36 A 873 ALA ARG GLU HIS PRO ARG THR VAL CYS VAL HIS GLU LEU SEQRES 37 A 873 PHE GLU GLN GLN VAL GLU ARG SER PRO ASP ALA VAL ALA SEQRES 38 A 873 LEU VAL TYR GLU GLY GLN GLN LEU SER TYR ARG GLU LEU SEQRES 39 A 873 ASP ARG GLN ALA ASN ARG LEU ALA ARG GLN LEU LYS ALA SEQRES 40 A 873 LEU GLY VAL GLY PRO ASP GLU ARG VAL ALA VAL CYS THR SEQRES 41 A 873 GLU ARG CYS LEU GLU MET VAL VAL ALA LEU LEU ALA VAL SEQRES 42 A 873 LEU LYS ALA GLY GLY ALA TYR VAL PRO LEU ASP PRO GLY SEQRES 43 A 873 TYR PRO ALA GLU ARG LEU GLU TYR MET LEU ALA ASP SER SEQRES 44 A 873 ALA PRO LYS VAL LEU LEU ARG GLN SER GLY GLN THR LEU SEQRES 45 A 873 GLU PRO GLY ALA GLY VAL ALA VAL LEU ALA LEU ASP GLY SEQRES 46 A 873 GLU ALA SER GLN PRO TRP GLN ALA GLN PRO ALA GLN ARG SEQRES 47 A 873 LEU SER ARG ASP ASP SER GLY VAL GLN PRO HIS HIS LEU SEQRES 48 A 873 ALA TYR VAL ILE TYR THR SER GLY SER THR GLY ARG PRO SEQRES 49 A 873 LYS GLY VAL MET VAL GLU HIS ALA GLY VAL VAL ASN ARG SEQRES 50 A 873 LEU LEU TRP MET GLN ARG ALA TYR GLY LEU GLN PRO GLN SEQRES 51 A 873 GLU ALA VAL LEU GLN LYS THR PRO PHE GLY PHE ASP VAL SEQRES 52 A 873 SER VAL TRP GLU PHE PHE TRP PRO LEU ALA VAL GLY ALA SEQRES 53 A 873 ARG LEU VAL MET ALA ARG PRO GLN GLY GLN GLN ASP PRO SEQRES 54 A 873 ALA TYR LEU VAL GLU THR ILE VAL GLY GLN ASP ILE GLY SEQRES 55 A 873 THR LEU HIS PHE VAL PRO SER MET LEU GLN ALA PHE VAL SEQRES 56 A 873 ASP SER GLU GLY VAL GLN ARG CYS ARG GLY VAL ARG ARG SEQRES 57 A 873 ILE VAL CYS SER GLY GLU ALA LEU PRO GLY ALA LEU ALA SEQRES 58 A 873 ARG ARG LEU ARG GLN GLN LEU PRO GLN VAL GLU LEU HIS SEQRES 59 A 873 ASN LEU TYR GLY PRO THR GLU ALA THR VAL ASP VAL THR SEQRES 60 A 873 ALA TRP ALA CYS ASP ALA ALA GLU LEU PRO ASP ASN ILE SEQRES 61 A 873 PRO ILE GLY ARG PRO VAL ASP ASN THR THR MET TYR VAL SEQRES 62 A 873 LEU ASP ALA HIS GLY GLN PRO VAL PRO THR GLY VAL ALA SEQRES 63 A 873 GLY GLU ILE HIS ILE GLY GLY VAL GLN VAL ALA ARG GLY SEQRES 64 A 873 TYR LEU GLY ARG PRO GLU LEU THR ARG GLU ARG PHE VAL SEQRES 65 A 873 PRO ASP PRO TYR ALA GLY ARG PRO GLY ALA ARG LEU TYR SEQRES 66 A 873 LYS THR GLY ASP LEU GLY ARG TRP LEU LEU ASP GLY THR SEQRES 67 A 873 LEU GLU TYR LEU GLY ARG ASN ASP HIS GLN VAL LYS ILE SEQRES 68 A 873 ARG GLY HET AMP A3101 23 HET SO4 A3102 5 HET SO4 A3103 5 HET SO4 A3104 5 HET SO4 A3105 5 HET GOL A3106 6 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *276(H2 O) HELIX 1 AA1 SER A 2142 GLY A 2160 1 19 HELIX 2 AA2 LEU A 2179 HIS A 2190 1 12 HELIX 3 AA3 GLU A 2224 SER A 2238 1 15 HELIX 4 AA4 ILE A 2269 SER A 2271 5 3 HELIX 5 AA5 ASP A 2272 GLU A 2293 1 22 HELIX 6 AA6 GLN A 2308 GLY A 2322 1 15 HELIX 7 AA7 GLY A 2322 LEU A 2336 1 15 HELIX 8 AA8 ASP A 2367 HIS A 2381 1 15 HELIX 9 AA9 THR A 2384 GLY A 2402 1 19 HELIX 10 AB1 SER A 2442 HIS A 2460 1 19 HELIX 11 AB2 PRO A 2464 LYS A 2473 1 10 HELIX 12 AB3 GLU A 2544 ASP A 2565 1 22 HELIX 13 AB4 PRO A 2569 ILE A 2573 5 5 HELIX 14 AB5 GLY A 2577 VAL A 2586 1 10 HELIX 15 AB6 GLU A 2587 ASP A 2590 5 4 HELIX 16 AB7 CYS A 2600 SER A 2612 1 13 HELIX 17 AB8 TYR A 2627 ALA A 2643 1 17 HELIX 18 AB9 CYS A 2659 ALA A 2672 1 14 HELIX 19 AC1 PRO A 2684 ALA A 2696 1 13 HELIX 20 AC2 GLY A 2721 GLN A 2730 5 10 HELIX 21 AC3 SER A 2736 GLY A 2741 1 6 HELIX 22 AC4 HIS A 2767 GLY A 2782 1 16 HELIX 23 AC5 ASP A 2798 GLY A 2811 1 14 HELIX 24 AC6 GLN A 2820 GLN A 2823 5 4 HELIX 25 AC7 ASP A 2824 GLN A 2835 1 12 HELIX 26 AC8 VAL A 2843 ASP A 2852 1 10 HELIX 27 AC9 GLY A 2855 CYS A 2859 5 5 HELIX 28 AD1 PRO A 2873 LEU A 2884 1 12 HELIX 29 AD2 PRO A 2895 THR A 2899 5 5 HELIX 30 AD3 ARG A 2959 ARG A 2966 1 8 SHEET 1 AA1 4 HIS A2163 LEU A2168 0 SHEET 2 AA1 4 LEU A2262 HIS A2267 -1 O MET A2266 N VAL A2164 SHEET 3 AA1 4 ILE A2248 LYS A2254 -1 N ARG A2251 O LEU A2263 SHEET 4 AA1 4 LEU A2216 GLU A2220 1 N VAL A2217 O GLY A2250 SHEET 1 AA2 2 THR A2195 TRP A2199 0 SHEET 2 AA2 2 PRO A2204 ILE A2208 -1 O CYS A2207 N ARG A2196 SHEET 1 AA3 4 GLY A2359 PHE A2366 0 SHEET 2 AA3 4 VAL A2532 ALA A2539 -1 O VAL A2532 N PHE A2366 SHEET 3 AA3 4 LEU A2520 GLU A2526 -1 N HIS A2525 O ALA A2533 SHEET 4 AA3 4 LEU A2486 GLU A2491 1 N MET A2487 O LEU A2522 SHEET 1 AA4 2 GLU A2405 VAL A2412 0 SHEET 2 AA4 2 ASN A2429 ASP A2436 -1 O ASN A2429 N VAL A2412 SHEET 1 AA5 4 GLN A2623 SER A2626 0 SHEET 2 AA5 4 VAL A2616 TYR A2620 -1 N ALA A2617 O LEU A2625 SHEET 3 AA5 4 ARG A2813 MET A2816 1 O MET A2816 N VAL A2619 SHEET 4 AA5 4 ALA A2788 GLN A2791 1 N VAL A2789 O VAL A2815 SHEET 1 AA6 4 ALA A2675 LEU A2679 0 SHEET 2 AA6 4 ARG A2651 CYS A2655 1 N VAL A2654 O LEU A2679 SHEET 3 AA6 4 VAL A2699 ARG A2702 1 O LEU A2701 N ALA A2653 SHEET 4 AA6 4 ALA A2715 ALA A2718 1 O ALA A2715 N LEU A2700 SHEET 1 AA7 3 LEU A2747 THR A2753 0 SHEET 2 AA7 3 LYS A2761 GLU A2766 -1 O VAL A2765 N ALA A2748 SHEET 3 AA7 3 GLY A2955 TYR A2956 -1 O GLY A2955 N MET A2764 SHEET 1 AA8 5 THR A2839 PHE A2842 0 SHEET 2 AA8 5 ARG A2864 CYS A2867 1 O VAL A2866 N LEU A2840 SHEET 3 AA8 5 GLU A2888 TYR A2893 1 O LEU A2892 N CYS A2867 SHEET 4 AA8 5 THR A2903 ALA A2906 -1 O TRP A2905 N ASN A2891 SHEET 5 AA8 5 ARG A2920 PRO A2921 -1 O ARG A2920 N ALA A2904 SHEET 1 AA9 4 THR A2925 LEU A2930 0 SHEET 2 AA9 4 GLY A2943 GLY A2949 -1 O HIS A2946 N TYR A2928 SHEET 3 AA9 4 ARG A2979 TRP A2989 -1 O ASP A2985 N ILE A2945 SHEET 4 AA9 4 PHE A2967 PRO A2969 -1 N VAL A2968 O LEU A2980 SHEET 1 AB1 4 THR A2925 LEU A2930 0 SHEET 2 AB1 4 GLY A2943 GLY A2949 -1 O HIS A2946 N TYR A2928 SHEET 3 AB1 4 ARG A2979 TRP A2989 -1 O ASP A2985 N ILE A2945 SHEET 4 AB1 4 LEU A2995 ARG A3000 -1 O GLY A2999 N LEU A2986 SITE 1 AC1 20 GLY A2869 GLU A2870 ALA A2871 ASN A2891 SITE 2 AC1 20 LEU A2892 TYR A2893 PRO A2895 THR A2896 SITE 3 AC1 20 ASP A2985 TYR A2997 HOH A3202 HOH A3210 SITE 4 AC1 20 HOH A3258 HOH A3268 HOH A3270 HOH A3340 SITE 5 AC1 20 HOH A3351 HOH A3359 HOH A3376 HOH A3408 SITE 1 AC2 9 ARG A2658 PRO A2794 PRO A2819 GLN A2820 SITE 2 AC2 9 GLN A2822 HOH A3235 HOH A3255 HOH A3257 SITE 3 AC2 9 HOH A3260 SITE 1 AC3 3 ARG A2632 GLN A2633 ARG A2636 SITE 1 AC4 2 ARG A2734 SER A2736 SITE 1 AC5 5 ARG A2651 MET A2764 LEU A2957 HOH A3201 SITE 2 AC5 5 HOH A3384 SITE 1 AC6 6 PRO A2794 PHE A2797 HIS A2841 VAL A2843 SITE 2 AC6 6 HOH A3313 HOH A3398 CRYST1 154.670 90.859 98.184 90.00 106.72 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006465 0.000000 0.001942 0.00000 SCALE2 0.000000 0.011006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010634 0.00000