HEADER TRANSFERASE/ANTIBIOTIC 16-MAY-19 6P06 TITLE TERNARY STRUCTURE OF THE E52D MUTANT OF ANT-4 WITH NEOMYCIN AND AMPCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: KANAMYCIN NUCLEOTIDYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP.; SOURCE 3 ORGANISM_TAXID: 1409; SOURCE 4 GENE: KNT, KAN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 6 PPPARG4; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS AMINOGLYCOSIDE NUCELOTIDYL TRANSFERASE (ANT), AMINOGLYCOSIDE KEYWDS 2 MODIFYING ENZYMES (AGMES), DNA POLYMERASE, ANTIBIOTIC, TRANSFERASE- KEYWDS 3 ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.SELVARAJ,M.J.CUNEO REVDAT 4 13-MAR-24 6P06 1 LINK REVDAT 3 20-MAY-20 6P06 1 JRNL REVDAT 2 06-MAY-20 6P06 1 JRNL REVDAT 1 29-JAN-20 6P06 0 JRNL AUTH B.SELVARAJ,S.KOCAMAN,M.TRIFAS,E.H.SERPERSU,M.J.CUNEO JRNL TITL "CATCH AND RELEASE": A VARIATION OF THE ARCHETYPAL JRNL TITL 2 NUCLEOTIDYL TRANSFER REACTION JRNL REF ACS CATALYSIS V. 10 3548 2020 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.9B05201 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 25609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.450 REMARK 3 FREE R VALUE TEST SET COUNT : 1396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9861 - 4.9537 0.99 2627 158 0.1541 0.1603 REMARK 3 2 4.9537 - 3.9324 0.99 2503 160 0.1347 0.1785 REMARK 3 3 3.9324 - 3.4355 0.99 2484 153 0.1590 0.1852 REMARK 3 4 3.4355 - 3.1214 0.98 2414 159 0.1824 0.2449 REMARK 3 5 3.1214 - 2.8977 0.97 2412 149 0.2031 0.2390 REMARK 3 6 2.8977 - 2.7269 0.97 2393 125 0.2119 0.3274 REMARK 3 7 2.7269 - 2.5904 0.96 2359 148 0.2313 0.2625 REMARK 3 8 2.5904 - 2.4776 0.93 2329 101 0.2260 0.3033 REMARK 3 9 2.4776 - 2.3822 0.95 2345 111 0.2270 0.2864 REMARK 3 10 2.3822 - 2.3000 0.95 2347 132 0.2428 0.3110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4357 REMARK 3 ANGLE : 1.219 5941 REMARK 3 CHIRALITY : 0.061 663 REMARK 3 PLANARITY : 0.007 738 REMARK 3 DIHEDRAL : 5.705 3442 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25660 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.52800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8000, 0.1 M MGCL2, 0.1 M TRIS REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.35500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.97500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.35500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.97500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3G APC B 301 O HOH B 401 1.95 REMARK 500 O HOH A 443 O HOH A 495 2.05 REMARK 500 O PHE B 104 O HOH B 402 2.09 REMARK 500 OG1 THR B 187 O HOH B 403 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 494 O HOH B 436 3445 2.09 REMARK 500 O HOH A 406 O HOH B 408 4545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 197 CA - CB - CG ANGL. DEV. = -13.2 DEGREES REMARK 500 LYS A 197 CG - CD - CE ANGL. DEV. = 19.5 DEGREES REMARK 500 GLU A 239 CB - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 GLU A 239 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 37 -164.09 -125.21 REMARK 500 GLU A 63 89.75 -157.17 REMARK 500 ASP A 200 44.42 72.20 REMARK 500 PRO A 252 31.67 -91.68 REMARK 500 TYR B 37 -166.31 -128.42 REMARK 500 ASP B 111 115.90 -160.04 REMARK 500 ASP B 200 40.01 76.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 50 OD1 REMARK 620 2 ASP A 50 OD2 43.4 REMARK 620 3 ASP A 52 OD1 85.1 89.4 REMARK 620 4 NMY A 301 O4 143.7 149.8 117.9 REMARK 620 5 APC A 302 O2A 70.8 114.2 85.1 83.0 REMARK 620 6 HOH A 408 O 125.4 82.4 88.8 85.1 162.2 REMARK 620 7 GLU B 145 OE1 98.2 75.3 152.5 74.4 121.9 66.9 REMARK 620 8 GLU B 145 OE2 68.9 80.5 151.1 80.5 74.8 116.2 49.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 50 OD1 REMARK 620 2 ASP A 52 OD2 101.1 REMARK 620 3 APC A 302 O1G 96.7 161.4 REMARK 620 4 APC A 302 O1B 162.1 94.0 67.6 REMARK 620 5 APC A 302 O2A 93.1 79.4 94.3 80.2 REMARK 620 6 HOH A 409 O 101.4 90.3 91.6 88.0 163.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 145 OE1 REMARK 620 2 GLU A 145 OE2 45.2 REMARK 620 3 NMY A 305 O4 76.5 81.9 REMARK 620 4 ASP B 50 OD1 103.9 76.1 146.7 REMARK 620 5 ASP B 50 OD2 77.7 81.4 154.1 44.6 REMARK 620 6 ASP B 52 OD1 152.2 160.9 107.2 88.0 94.8 REMARK 620 7 APC B 301 O2A 116.2 73.2 80.8 69.1 112.9 91.5 REMARK 620 8 HOH B 406 O 68.3 113.5 85.7 126.0 82.9 84.3 164.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 50 OD1 REMARK 620 2 ASP B 52 OD2 97.2 REMARK 620 3 APC B 301 O3G 93.5 169.3 REMARK 620 4 APC B 301 O1B 155.6 106.8 62.8 REMARK 620 5 APC B 301 O2A 85.5 94.7 87.6 87.7 REMARK 620 6 HOH B 401 O 58.8 151.3 37.6 99.2 98.4 REMARK 620 7 HOH B 415 O 104.9 85.0 90.8 82.4 169.5 86.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NMY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NMY A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 DBREF 6P06 A 1 253 UNP P05058 KANU_BACSP 1 253 DBREF 6P06 B 1 253 UNP P05058 KANU_BACSP 1 253 SEQADV 6P06 GLY A -2 UNP P05058 EXPRESSION TAG SEQADV 6P06 SER A -1 UNP P05058 EXPRESSION TAG SEQADV 6P06 HIS A 0 UNP P05058 EXPRESSION TAG SEQADV 6P06 ASP A 52 UNP P05058 GLU 52 ENGINEERED MUTATION SEQADV 6P06 GLY B -2 UNP P05058 EXPRESSION TAG SEQADV 6P06 SER B -1 UNP P05058 EXPRESSION TAG SEQADV 6P06 HIS B 0 UNP P05058 EXPRESSION TAG SEQADV 6P06 ASP B 52 UNP P05058 GLU 52 ENGINEERED MUTATION SEQRES 1 A 256 GLY SER HIS MET ASN GLY PRO ILE ILE MET THR ARG GLU SEQRES 2 A 256 GLU ARG MET LYS ILE VAL HIS GLU ILE LYS GLU ARG ILE SEQRES 3 A 256 LEU ASP LYS TYR GLY ASP ASP VAL LYS ALA ILE GLY VAL SEQRES 4 A 256 TYR GLY SER LEU GLY ARG GLN THR ASP GLY PRO TYR SER SEQRES 5 A 256 ASP ILE ASP MET MET CYS VAL MET SER THR GLU GLU ALA SEQRES 6 A 256 GLU PHE SER HIS GLU TRP THR THR GLY GLU TRP LYS VAL SEQRES 7 A 256 GLU VAL ASN PHE ASP SER GLU GLU ILE LEU LEU ASP TYR SEQRES 8 A 256 ALA SER GLN VAL GLU SER ASP TRP PRO LEU THR HIS GLY SEQRES 9 A 256 GLN PHE PHE SER ILE LEU PRO ILE TYR ASP SER GLY GLY SEQRES 10 A 256 TYR LEU GLU LYS VAL TYR GLN THR ALA LYS SER VAL GLU SEQRES 11 A 256 ALA GLN LYS PHE HIS ASP ALA ILE CYS ALA LEU ILE VAL SEQRES 12 A 256 GLU GLU LEU PHE GLU TYR ALA GLY LYS TRP ARG ASN ILE SEQRES 13 A 256 ARG VAL GLN GLY PRO THR THR PHE LEU PRO SER LEU THR SEQRES 14 A 256 VAL GLN VAL ALA MET ALA GLY ALA MET LEU ILE GLY LEU SEQRES 15 A 256 HIS HIS ARG ILE CYS TYR THR THR SER ALA SER VAL LEU SEQRES 16 A 256 THR GLU ALA VAL LYS GLN SER ASP LEU PRO SER GLY TYR SEQRES 17 A 256 ASP HIS LEU CYS GLN PHE VAL MET SER GLY GLN LEU SER SEQRES 18 A 256 ASP SER GLU LYS LEU LEU GLU SER LEU GLU ASN PHE TRP SEQRES 19 A 256 ASN GLY ILE GLN GLU TRP THR GLU ARG HIS GLY TYR ILE SEQRES 20 A 256 VAL ASP VAL SER LYS ARG ILE PRO PHE SEQRES 1 B 256 GLY SER HIS MET ASN GLY PRO ILE ILE MET THR ARG GLU SEQRES 2 B 256 GLU ARG MET LYS ILE VAL HIS GLU ILE LYS GLU ARG ILE SEQRES 3 B 256 LEU ASP LYS TYR GLY ASP ASP VAL LYS ALA ILE GLY VAL SEQRES 4 B 256 TYR GLY SER LEU GLY ARG GLN THR ASP GLY PRO TYR SER SEQRES 5 B 256 ASP ILE ASP MET MET CYS VAL MET SER THR GLU GLU ALA SEQRES 6 B 256 GLU PHE SER HIS GLU TRP THR THR GLY GLU TRP LYS VAL SEQRES 7 B 256 GLU VAL ASN PHE ASP SER GLU GLU ILE LEU LEU ASP TYR SEQRES 8 B 256 ALA SER GLN VAL GLU SER ASP TRP PRO LEU THR HIS GLY SEQRES 9 B 256 GLN PHE PHE SER ILE LEU PRO ILE TYR ASP SER GLY GLY SEQRES 10 B 256 TYR LEU GLU LYS VAL TYR GLN THR ALA LYS SER VAL GLU SEQRES 11 B 256 ALA GLN LYS PHE HIS ASP ALA ILE CYS ALA LEU ILE VAL SEQRES 12 B 256 GLU GLU LEU PHE GLU TYR ALA GLY LYS TRP ARG ASN ILE SEQRES 13 B 256 ARG VAL GLN GLY PRO THR THR PHE LEU PRO SER LEU THR SEQRES 14 B 256 VAL GLN VAL ALA MET ALA GLY ALA MET LEU ILE GLY LEU SEQRES 15 B 256 HIS HIS ARG ILE CYS TYR THR THR SER ALA SER VAL LEU SEQRES 16 B 256 THR GLU ALA VAL LYS GLN SER ASP LEU PRO SER GLY TYR SEQRES 17 B 256 ASP HIS LEU CYS GLN PHE VAL MET SER GLY GLN LEU SER SEQRES 18 B 256 ASP SER GLU LYS LEU LEU GLU SER LEU GLU ASN PHE TRP SEQRES 19 B 256 ASN GLY ILE GLN GLU TRP THR GLU ARG HIS GLY TYR ILE SEQRES 20 B 256 VAL ASP VAL SER LYS ARG ILE PRO PHE HET NMY A 301 42 HET APC A 302 31 HET CA A 303 1 HET CA A 304 1 HET NMY A 305 42 HET CA A 306 1 HET APC B 301 31 HET CA B 302 1 HETNAM NMY NEOMYCIN HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM CA CALCIUM ION HETSYN NMY MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 3 NMY 2(C23 H46 N6 O13) FORMUL 4 APC 2(C11 H18 N5 O12 P3) FORMUL 5 CA 4(CA 2+) FORMUL 11 HOH *199(H2 O) HELIX 1 AA1 THR A 8 GLY A 28 1 21 HELIX 2 AA2 GLY A 38 ARG A 42 1 5 HELIX 3 AA3 GLU A 82 SER A 90 1 9 HELIX 4 AA4 ASP A 95 HIS A 100 1 6 HELIX 5 AA5 GLY A 101 PHE A 104 5 4 HELIX 6 AA6 GLY A 114 SER A 125 1 12 HELIX 7 AA7 GLU A 127 GLU A 142 1 16 HELIX 8 AA8 GLU A 142 GLY A 157 1 16 HELIX 9 AA9 PRO A 158 THR A 160 5 3 HELIX 10 AB1 PHE A 161 ARG A 182 1 22 HELIX 11 AB2 THR A 187 ALA A 189 5 3 HELIX 12 AB3 SER A 190 VAL A 196 1 7 HELIX 13 AB4 GLY A 204 GLY A 215 1 12 HELIX 14 AB5 ASP A 219 HIS A 241 1 23 HELIX 15 AB6 THR B 8 GLY B 28 1 21 HELIX 16 AB7 GLY B 38 ARG B 42 1 5 HELIX 17 AB8 GLU B 82 SER B 90 1 9 HELIX 18 AB9 ASP B 95 HIS B 100 1 6 HELIX 19 AC1 GLY B 101 SER B 105 5 5 HELIX 20 AC2 GLY B 114 SER B 125 1 12 HELIX 21 AC3 GLU B 127 GLU B 142 1 16 HELIX 22 AC4 GLU B 142 GLY B 157 1 16 HELIX 23 AC5 PRO B 158 THR B 160 5 3 HELIX 24 AC6 PHE B 161 ARG B 182 1 22 HELIX 25 AC7 THR B 187 ALA B 189 5 3 HELIX 26 AC8 SER B 190 VAL B 196 1 7 HELIX 27 AC9 GLY B 204 GLY B 215 1 12 HELIX 28 AD1 ASP B 219 GLY B 242 1 24 SHEET 1 AA1 5 GLU A 63 THR A 69 0 SHEET 2 AA1 5 LYS A 74 SER A 81 -1 O PHE A 79 N PHE A 64 SHEET 3 AA1 5 ILE A 51 MET A 57 1 N MET A 53 O GLU A 76 SHEET 4 AA1 5 VAL A 31 TYR A 37 -1 N LYS A 32 O VAL A 56 SHEET 5 AA1 5 LEU A 107 ASP A 111 -1 O TYR A 110 N ILE A 34 SHEET 1 AA2 5 GLU B 63 THR B 69 0 SHEET 2 AA2 5 LYS B 74 SER B 81 -1 O PHE B 79 N PHE B 64 SHEET 3 AA2 5 ILE B 51 MET B 57 1 N CYS B 55 O ASN B 78 SHEET 4 AA2 5 VAL B 31 TYR B 37 -1 N LYS B 32 O VAL B 56 SHEET 5 AA2 5 LEU B 107 ASP B 111 -1 O LEU B 107 N VAL B 36 LINK OD1 ASP A 50 CA CA A 303 1555 1555 3.20 LINK OD2 ASP A 50 CA CA A 303 1555 1555 2.62 LINK OD1 ASP A 50 CA CA A 304 1555 1555 2.36 LINK OD1 ASP A 52 CA CA A 303 1555 1555 2.38 LINK OD2 ASP A 52 CA CA A 304 1555 1555 2.33 LINK OE1 GLU A 145 CA CA A 306 1555 1555 3.12 LINK OE2 GLU A 145 CA CA A 306 1555 1555 2.35 LINK O4 NMY A 301 CA CA A 303 1555 1555 2.41 LINK O2A APC A 302 CA CA A 303 1555 1555 2.57 LINK O1G APC A 302 CA CA A 304 1555 1555 2.67 LINK O1B APC A 302 CA CA A 304 1555 1555 2.31 LINK O2A APC A 302 CA CA A 304 1555 1555 2.29 LINK CA CA A 303 O HOH A 408 1555 1555 2.39 LINK CA CA A 303 OE1 GLU B 145 1555 1555 2.81 LINK CA CA A 303 OE2 GLU B 145 1555 1555 2.30 LINK CA CA A 304 O HOH A 409 1555 1555 2.32 LINK O4 NMY A 305 CA CA A 306 1555 1555 2.30 LINK CA CA A 306 OD1 ASP B 50 1555 1555 3.06 LINK CA CA A 306 OD2 ASP B 50 1555 1555 2.42 LINK CA CA A 306 OD1 ASP B 52 1555 1555 2.29 LINK CA CA A 306 O2A APC B 301 1555 1555 2.43 LINK CA CA A 306 O HOH B 406 1555 1555 2.41 LINK OD1 ASP B 50 CA CA B 302 1555 1555 2.35 LINK OD2 ASP B 52 CA CA B 302 1555 1555 2.26 LINK O3G APC B 301 CA CA B 302 1555 1555 3.15 LINK O1B APC B 301 CA CA B 302 1555 1555 2.38 LINK O2A APC B 301 CA CA B 302 1555 1555 2.29 LINK CA CA B 302 O HOH B 401 1555 1555 2.17 LINK CA CA B 302 O HOH B 415 1555 1555 2.39 CISPEP 1 GLY A 157 PRO A 158 0 -0.42 CISPEP 2 GLY B 157 PRO B 158 0 1.52 SITE 1 AC1 17 TYR A 37 ASP A 52 GLU A 63 GLU A 67 SITE 2 AC1 17 GLU A 76 ASP A 80 TYR A 88 GLN A 102 SITE 3 AC1 17 APC A 302 CA A 303 HOH A 434 HOH A 465 SITE 4 AC1 17 HOH A 480 GLU B 141 GLU B 145 HOH B 405 SITE 5 AC1 17 HOH B 440 SITE 1 AC2 21 TYR A 37 GLY A 38 SER A 39 ARG A 42 SITE 2 AC2 21 SER A 49 ASP A 50 ASP A 52 LEU A 98 SITE 3 AC2 21 THR A 99 GLN A 102 THR A 186 THR A 187 SITE 4 AC2 21 NMY A 301 CA A 303 CA A 304 HOH A 404 SITE 5 AC2 21 HOH A 405 HOH A 429 GLU B 145 LYS B 149 SITE 6 AC2 21 HOH B 426 SITE 1 AC3 6 ASP A 50 ASP A 52 NMY A 301 APC A 302 SITE 2 AC3 6 HOH A 408 GLU B 145 SITE 1 AC4 4 ASP A 50 ASP A 52 APC A 302 HOH A 409 SITE 1 AC5 19 GLU A 141 GLU A 145 CA A 306 HOH A 402 SITE 2 AC5 19 HOH A 410 HOH A 411 HOH A 413 HOH A 436 SITE 3 AC5 19 HOH A 457 HOH A 458 TYR B 37 ASP B 52 SITE 4 AC5 19 GLU B 63 GLU B 67 GLU B 76 ASP B 80 SITE 5 AC5 19 TYR B 88 GLN B 102 APC B 301 SITE 1 AC6 7 GLU A 145 NMY A 305 ASP B 50 ASP B 52 SITE 2 AC6 7 APC B 301 CA B 302 HOH B 406 SITE 1 AC7 24 GLU A 145 LYS A 149 NMY A 305 CA A 306 SITE 2 AC7 24 HOH A 433 GLY B 38 SER B 39 ARG B 42 SITE 3 AC7 24 SER B 49 ASP B 50 ASP B 52 LEU B 98 SITE 4 AC7 24 THR B 99 GLY B 101 GLN B 102 THR B 187 SITE 5 AC7 24 CA B 302 HOH B 401 HOH B 403 HOH B 409 SITE 6 AC7 24 HOH B 425 HOH B 428 HOH B 433 HOH B 481 SITE 1 AC8 6 CA A 306 ASP B 50 ASP B 52 APC B 301 SITE 2 AC8 6 HOH B 401 HOH B 415 CRYST1 58.710 97.950 100.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017033 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009930 0.00000