HEADER TRANSFERASE 17-MAY-19 6P0Y TITLE CRYPTOSPORIDIUM PARVUM PYRUVATE KINASE IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.40; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM PARVUM (STRAIN IOWA II); SOURCE 3 ORGANISM_TAXID: 353152; SOURCE 4 STRAIN: IOWA II; SOURCE 5 VARIANT: IOWA II; SOURCE 6 GENE: CGD1_2040; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS PYRUVATE, KINASE, GLYCOLYSIS, CRYPTOSPORIDIUM, TRANSFERASE, KEYWDS 2 ALLOSTERIC ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHORMANN,D.CHATTOPADHYAY REVDAT 3 11-OCT-23 6P0Y 1 LINK REVDAT 2 25-SEP-19 6P0Y 1 JRNL REVDAT 1 21-AUG-19 6P0Y 0 JRNL AUTH N.SCHORMANN,K.L.HAYDEN,P.LEE,S.BANERJEE,D.CHATTOPADHYAY JRNL TITL AN OVERVIEW OF STRUCTURE, FUNCTION, AND REGULATION OF JRNL TITL 2 PYRUVATE KINASES. JRNL REF PROTEIN SCI. V. 28 1771 2019 JRNL REFN ESSN 1469-896X JRNL PMID 31342570 JRNL DOI 10.1002/PRO.3691 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1835 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2563 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.822 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.335 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.083 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7648 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7303 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10356 ; 1.252 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17032 ; 1.083 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 995 ; 6.116 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 313 ;34.197 ;23.674 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1380 ;15.390 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1097 ; 0.041 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8503 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1347 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 22 526 B 22 526 14689 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 6P0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION NOV. 11, 2013 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36773 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.18500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 4DRS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG 8000, 0.1M HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 66.73250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.65250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.73250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.65250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -210.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 133.46500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 105.30500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 ASP A 5 REMARK 465 HIS A 6 REMARK 465 LEU A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 SER A 14 REMARK 465 ALA A 15 REMARK 465 VAL A 16 REMARK 465 MET A 17 REMARK 465 SER A 18 REMARK 465 CYS A 19 REMARK 465 THR A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 37 REMARK 465 ASP A 38 REMARK 465 LYS A 207 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 ASP B 5 REMARK 465 HIS B 6 REMARK 465 LEU B 7 REMARK 465 LYS B 8 REMARK 465 ARG B 9 REMARK 465 LEU B 10 REMARK 465 ALA B 11 REMARK 465 SER B 12 REMARK 465 THR B 13 REMARK 465 SER B 14 REMARK 465 ALA B 15 REMARK 465 VAL B 16 REMARK 465 MET B 17 REMARK 465 SER B 18 REMARK 465 CYS B 19 REMARK 465 THR B 20 REMARK 465 LEU B 21 REMARK 465 ALA B 37 REMARK 465 ASP B 38 REMARK 465 ILE B 126 REMARK 465 GLU B 127 REMARK 465 LYS B 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 56 39.62 -148.16 REMARK 500 PRO A 113 38.26 -82.10 REMARK 500 LYS A 124 128.47 72.19 REMARK 500 ASN A 145 -164.37 -129.84 REMARK 500 LEU A 155 31.47 -96.33 REMARK 500 ALA A 169 75.06 59.85 REMARK 500 PHE A 224 -65.77 -136.99 REMARK 500 LEU A 297 9.69 -63.61 REMARK 500 MET A 299 143.43 80.30 REMARK 500 GLU A 300 -33.84 73.29 REMARK 500 SER A 362 -95.61 -111.15 REMARK 500 ASP B 40 108.55 116.04 REMARK 500 CYS B 56 39.60 -147.96 REMARK 500 PRO B 113 38.85 -81.20 REMARK 500 ASN B 145 -165.05 -129.52 REMARK 500 LEU B 155 30.65 -95.22 REMARK 500 ALA B 169 76.12 59.02 REMARK 500 GLU B 197 104.17 98.63 REMARK 500 ARG B 198 50.36 38.25 REMARK 500 HIS B 209 56.11 -91.92 REMARK 500 PHE B 224 -65.94 -137.02 REMARK 500 MET B 299 -75.89 -64.02 REMARK 500 SER B 362 -95.88 -110.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 76 OD1 REMARK 620 2 SER A 78 OG 68.4 REMARK 620 3 ASP A 109 OD1 97.6 158.3 REMARK 620 4 THR A 110 O 124.5 101.5 72.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 601 O3B REMARK 620 2 ADP A 601 O2A 87.5 REMARK 620 3 HOH A 760 O 75.6 74.4 REMARK 620 4 HOH A 789 O 113.5 90.1 162.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 76 OD1 REMARK 620 2 SER B 78 OG 68.6 REMARK 620 3 ASP B 109 OD1 99.9 162.3 REMARK 620 4 THR B 110 O 127.0 102.7 72.9 REMARK 620 5 HOH B 780 O 69.1 70.3 119.3 160.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 601 O2B REMARK 620 2 ADP B 601 O1A 72.3 REMARK 620 3 HOH B 709 O 80.1 66.3 REMARK 620 4 HOH B 774 O 82.5 70.8 136.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DRS RELATED DB: PDB REMARK 900 4DRS CONTAINS THE SAME PROTEIN IN THE 'APO' STATE. DBREF 6P0Y A 1 526 UNP Q5CSM7 Q5CSM7_CRYPI 7 532 DBREF 6P0Y B 1 526 UNP Q5CSM7 Q5CSM7_CRYPI 7 532 SEQRES 1 A 526 MET ILE SER ASN ASP HIS LEU LYS ARG LEU ALA SER THR SEQRES 2 A 526 SER ALA VAL MET SER CYS THR LEU GLY LYS ALA THR CYS SEQRES 3 A 526 LEU GLY MET ASP LYS ILE CYS SER PRO LEU ALA ASP ASN SEQRES 4 A 526 ASP VAL THR GLN ARG LYS THR GLN ILE ILE CYS THR ILE SEQRES 5 A 526 GLY PRO SER CYS ASN ASN VAL GLU SER LEU ILE GLY LEU SEQRES 6 A 526 ILE ASP LYS GLY MET SER VAL ALA ARG LEU ASN PHE SER SEQRES 7 A 526 HIS GLY ASP HIS GLU SER HIS PHE LYS THR LEU GLN ASN SEQRES 8 A 526 ILE ARG GLU ALA ALA LYS ALA ARG PRO HIS SER THR VAL SEQRES 9 A 526 GLY ILE MET LEU ASP THR LYS GLY PRO GLU ILE ARG THR SEQRES 10 A 526 GLY MET LEU GLU GLY GLY LYS PRO ILE GLU LEU LYS ALA SEQRES 11 A 526 GLY GLN THR LEU LYS ILE THR THR ASP TYR SER MET LEU SEQRES 12 A 526 GLY ASN SER GLU CYS ILE SER CYS SER TYR SER LEU LEU SEQRES 13 A 526 PRO LYS SER VAL GLN ILE GLY SER THR VAL LEU ILE ALA SEQRES 14 A 526 ASP GLY SER LEU SER THR GLN VAL LEU GLU ILE GLY ASP SEQRES 15 A 526 ASP PHE ILE VAL CYS LYS VAL LEU ASN SER VAL THR ILE SEQRES 16 A 526 GLY GLU ARG LYS ASN MET ASN LEU PRO GLY CYS LYS VAL SEQRES 17 A 526 HIS LEU PRO ILE ILE GLY ASP LYS ASP ARG HIS ASP ILE SEQRES 18 A 526 VAL ASP PHE ALA LEU LYS TYR ASN LEU ASP PHE ILE ALA SEQRES 19 A 526 LEU SER PHE VAL GLN ASN GLY ALA ASP VAL GLN LEU CYS SEQRES 20 A 526 ARG GLN ILE ILE SER GLU ASN THR GLN TYR SER ASN GLY SEQRES 21 A 526 ILE PRO SER SER ILE LYS ILE ILE SER LYS ILE GLU ASN SEQRES 22 A 526 LEU GLU GLY VAL ILE ASN PHE ASP SER ILE CYS SER GLU SEQRES 23 A 526 SER ASP GLY ILE MET VAL ALA ARG GLY ASP LEU GLY MET SEQRES 24 A 526 GLU ILE PRO PRO GLU LYS ILE PHE VAL ALA GLN LYS CYS SEQRES 25 A 526 MET ILE SER LYS CYS ASN VAL ALA GLY LYS PRO VAL VAL SEQRES 26 A 526 THR ALA THR GLN MET LEU GLU SER MET ILE LYS SER ASN SEQRES 27 A 526 ARG PRO THR ARG ALA GLU MET THR ASP VAL ALA ASN ALA SEQRES 28 A 526 VAL LEU ASP GLY SER ASP CYS VAL MET LEU SER GLY GLU SEQRES 29 A 526 THR ALA ASN GLY ALA PHE PRO PHE ASP ALA VAL ASN VAL SEQRES 30 A 526 MET SER ARG VAL CYS ALA GLN ALA GLU THR CYS ILE ASP SEQRES 31 A 526 TYR PRO VAL LEU TYR HIS ALA ILE HIS SER SER VAL PRO SEQRES 32 A 526 LYS PRO VAL ALA VAL PRO GLU ALA ILE ALA CYS SER ALA SEQRES 33 A 526 VAL GLU SER ALA HIS ASP VAL ASN ALA LYS LEU ILE ILE SEQRES 34 A 526 THR ILE THR GLU THR GLY ASN THR ALA ARG LEU ILE SER SEQRES 35 A 526 LYS TYR ARG PRO SER GLN THR ILE ILE ALA CYS THR ALA SEQRES 36 A 526 LYS PRO GLU VAL ALA ARG GLY LEU LYS ILE ALA ARG GLY SEQRES 37 A 526 VAL LYS THR TYR VAL LEU ASN SER ILE HIS HIS SER GLU SEQRES 38 A 526 VAL VAL ILE SER ASN ALA LEU ALA LEU ALA LYS GLU GLU SEQRES 39 A 526 SER LEU ILE GLU SER GLY ASP PHE ALA ILE ALA VAL HIS SEQRES 40 A 526 GLY VAL LYS GLU SER CYS PRO GLY SER CYS ASN LEU MET SEQRES 41 A 526 LYS ILE VAL ARG CYS PRO SEQRES 1 B 526 MET ILE SER ASN ASP HIS LEU LYS ARG LEU ALA SER THR SEQRES 2 B 526 SER ALA VAL MET SER CYS THR LEU GLY LYS ALA THR CYS SEQRES 3 B 526 LEU GLY MET ASP LYS ILE CYS SER PRO LEU ALA ASP ASN SEQRES 4 B 526 ASP VAL THR GLN ARG LYS THR GLN ILE ILE CYS THR ILE SEQRES 5 B 526 GLY PRO SER CYS ASN ASN VAL GLU SER LEU ILE GLY LEU SEQRES 6 B 526 ILE ASP LYS GLY MET SER VAL ALA ARG LEU ASN PHE SER SEQRES 7 B 526 HIS GLY ASP HIS GLU SER HIS PHE LYS THR LEU GLN ASN SEQRES 8 B 526 ILE ARG GLU ALA ALA LYS ALA ARG PRO HIS SER THR VAL SEQRES 9 B 526 GLY ILE MET LEU ASP THR LYS GLY PRO GLU ILE ARG THR SEQRES 10 B 526 GLY MET LEU GLU GLY GLY LYS PRO ILE GLU LEU LYS ALA SEQRES 11 B 526 GLY GLN THR LEU LYS ILE THR THR ASP TYR SER MET LEU SEQRES 12 B 526 GLY ASN SER GLU CYS ILE SER CYS SER TYR SER LEU LEU SEQRES 13 B 526 PRO LYS SER VAL GLN ILE GLY SER THR VAL LEU ILE ALA SEQRES 14 B 526 ASP GLY SER LEU SER THR GLN VAL LEU GLU ILE GLY ASP SEQRES 15 B 526 ASP PHE ILE VAL CYS LYS VAL LEU ASN SER VAL THR ILE SEQRES 16 B 526 GLY GLU ARG LYS ASN MET ASN LEU PRO GLY CYS LYS VAL SEQRES 17 B 526 HIS LEU PRO ILE ILE GLY ASP LYS ASP ARG HIS ASP ILE SEQRES 18 B 526 VAL ASP PHE ALA LEU LYS TYR ASN LEU ASP PHE ILE ALA SEQRES 19 B 526 LEU SER PHE VAL GLN ASN GLY ALA ASP VAL GLN LEU CYS SEQRES 20 B 526 ARG GLN ILE ILE SER GLU ASN THR GLN TYR SER ASN GLY SEQRES 21 B 526 ILE PRO SER SER ILE LYS ILE ILE SER LYS ILE GLU ASN SEQRES 22 B 526 LEU GLU GLY VAL ILE ASN PHE ASP SER ILE CYS SER GLU SEQRES 23 B 526 SER ASP GLY ILE MET VAL ALA ARG GLY ASP LEU GLY MET SEQRES 24 B 526 GLU ILE PRO PRO GLU LYS ILE PHE VAL ALA GLN LYS CYS SEQRES 25 B 526 MET ILE SER LYS CYS ASN VAL ALA GLY LYS PRO VAL VAL SEQRES 26 B 526 THR ALA THR GLN MET LEU GLU SER MET ILE LYS SER ASN SEQRES 27 B 526 ARG PRO THR ARG ALA GLU MET THR ASP VAL ALA ASN ALA SEQRES 28 B 526 VAL LEU ASP GLY SER ASP CYS VAL MET LEU SER GLY GLU SEQRES 29 B 526 THR ALA ASN GLY ALA PHE PRO PHE ASP ALA VAL ASN VAL SEQRES 30 B 526 MET SER ARG VAL CYS ALA GLN ALA GLU THR CYS ILE ASP SEQRES 31 B 526 TYR PRO VAL LEU TYR HIS ALA ILE HIS SER SER VAL PRO SEQRES 32 B 526 LYS PRO VAL ALA VAL PRO GLU ALA ILE ALA CYS SER ALA SEQRES 33 B 526 VAL GLU SER ALA HIS ASP VAL ASN ALA LYS LEU ILE ILE SEQRES 34 B 526 THR ILE THR GLU THR GLY ASN THR ALA ARG LEU ILE SER SEQRES 35 B 526 LYS TYR ARG PRO SER GLN THR ILE ILE ALA CYS THR ALA SEQRES 36 B 526 LYS PRO GLU VAL ALA ARG GLY LEU LYS ILE ALA ARG GLY SEQRES 37 B 526 VAL LYS THR TYR VAL LEU ASN SER ILE HIS HIS SER GLU SEQRES 38 B 526 VAL VAL ILE SER ASN ALA LEU ALA LEU ALA LYS GLU GLU SEQRES 39 B 526 SER LEU ILE GLU SER GLY ASP PHE ALA ILE ALA VAL HIS SEQRES 40 B 526 GLY VAL LYS GLU SER CYS PRO GLY SER CYS ASN LEU MET SEQRES 41 B 526 LYS ILE VAL ARG CYS PRO HET ADP A 601 27 HET MG A 602 1 HET K A 603 1 HET CL A 604 1 HET ADP B 601 27 HET MG B 602 1 HET K B 603 1 HET CL B 604 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 5 K 2(K 1+) FORMUL 6 CL 2(CL 1-) FORMUL 11 HOH *225(H2 O) HELIX 1 AA1 LYS A 23 CYS A 33 1 11 HELIX 2 AA2 GLY A 53 ASN A 57 5 5 HELIX 3 AA3 ASN A 58 GLY A 69 1 12 HELIX 4 AA4 ASP A 81 ALA A 98 1 18 HELIX 5 AA5 LEU A 156 VAL A 160 5 5 HELIX 6 AA6 GLY A 214 PHE A 224 1 11 HELIX 7 AA7 ASN A 240 ASN A 254 1 15 HELIX 8 AA8 THR A 255 ASN A 259 5 5 HELIX 9 AA9 ASN A 273 ASN A 279 1 7 HELIX 10 AB1 ASN A 279 SER A 287 1 9 HELIX 11 AB2 PRO A 302 GLU A 304 5 3 HELIX 12 AB3 LYS A 305 GLY A 321 1 17 HELIX 13 AB4 LEU A 331 LYS A 336 5 6 HELIX 14 AB5 THR A 341 ASP A 354 1 14 HELIX 15 AB6 SER A 362 ASN A 367 1 6 HELIX 16 AB7 PHE A 370 CYS A 388 1 19 HELIX 17 AB8 ASP A 390 SER A 400 1 11 HELIX 18 AB9 ALA A 407 VAL A 423 1 17 HELIX 19 AC1 GLY A 435 TYR A 444 1 10 HELIX 20 AC2 LYS A 456 LEU A 463 1 8 HELIX 21 AC3 HIS A 479 GLU A 494 1 16 HELIX 22 AC4 LYS B 23 CYS B 33 1 11 HELIX 23 AC5 GLY B 53 ASN B 57 5 5 HELIX 24 AC6 ASN B 58 GLY B 69 1 12 HELIX 25 AC7 ASP B 81 ALA B 98 1 18 HELIX 26 AC8 LEU B 156 VAL B 160 5 5 HELIX 27 AC9 GLY B 214 PHE B 224 1 11 HELIX 28 AD1 ASN B 240 ASN B 254 1 15 HELIX 29 AD2 THR B 255 ASN B 259 5 5 HELIX 30 AD3 ASN B 273 ASN B 279 1 7 HELIX 31 AD4 ASN B 279 SER B 287 1 9 HELIX 32 AD5 ALA B 293 GLY B 298 1 6 HELIX 33 AD6 PRO B 302 GLU B 304 5 3 HELIX 34 AD7 LYS B 305 GLY B 321 1 17 HELIX 35 AD8 LEU B 331 LYS B 336 5 6 HELIX 36 AD9 THR B 341 ASP B 354 1 14 HELIX 37 AE1 SER B 362 ASN B 367 1 6 HELIX 38 AE2 PHE B 370 CYS B 388 1 19 HELIX 39 AE3 ASP B 390 SER B 400 1 11 HELIX 40 AE4 ALA B 407 VAL B 423 1 17 HELIX 41 AE5 GLY B 435 TYR B 444 1 10 HELIX 42 AE6 LYS B 456 LEU B 463 1 8 HELIX 43 AE7 HIS B 479 GLU B 494 1 16 SHEET 1 AA1 9 GLN A 47 THR A 51 0 SHEET 2 AA1 9 VAL A 72 ASN A 76 1 O VAL A 72 N CYS A 50 SHEET 3 AA1 9 GLY A 105 ASP A 109 1 O GLY A 105 N ALA A 73 SHEET 4 AA1 9 PHE A 232 LEU A 235 1 O PHE A 232 N LEU A 108 SHEET 5 AA1 9 LYS A 266 ILE A 271 1 O LYS A 270 N LEU A 235 SHEET 6 AA1 9 GLY A 289 VAL A 292 1 O MET A 291 N SER A 269 SHEET 7 AA1 9 VAL A 324 THR A 326 1 O VAL A 325 N ILE A 290 SHEET 8 AA1 9 CYS A 358 LEU A 361 1 O CYS A 358 N THR A 326 SHEET 9 AA1 9 GLN A 47 THR A 51 1 N ILE A 49 O LEU A 361 SHEET 1 AA2 7 ILE A 115 ARG A 116 0 SHEET 2 AA2 7 ASN A 200 ASN A 202 -1 O MET A 201 N ILE A 115 SHEET 3 AA2 7 THR A 165 ILE A 168 -1 N LEU A 167 O ASN A 202 SHEET 4 AA2 7 LEU A 173 ILE A 180 -1 O THR A 175 N VAL A 166 SHEET 5 AA2 7 PHE A 184 VAL A 189 -1 O LYS A 188 N GLN A 176 SHEET 6 AA2 7 THR A 133 THR A 137 -1 N LEU A 134 O CYS A 187 SHEET 7 AA2 7 CYS A 148 SER A 150 1 O ILE A 149 N LYS A 135 SHEET 1 AA3 2 ILE A 126 LEU A 128 0 SHEET 2 AA3 2 VAL A 193 ILE A 195 -1 O VAL A 193 N LEU A 128 SHEET 1 AA4 5 VAL A 469 VAL A 473 0 SHEET 2 AA4 5 THR A 449 THR A 454 1 N ILE A 450 O LYS A 470 SHEET 3 AA4 5 LEU A 427 ILE A 431 1 N THR A 430 O CYS A 453 SHEET 4 AA4 5 PHE A 502 VAL A 509 1 O ILE A 504 N ILE A 429 SHEET 5 AA4 5 CYS A 517 ARG A 524 -1 O LYS A 521 N ALA A 505 SHEET 1 AA5 9 GLN B 47 THR B 51 0 SHEET 2 AA5 9 VAL B 72 ASN B 76 1 O VAL B 72 N CYS B 50 SHEET 3 AA5 9 GLY B 105 ASP B 109 1 O GLY B 105 N ALA B 73 SHEET 4 AA5 9 PHE B 232 LEU B 235 1 O PHE B 232 N LEU B 108 SHEET 5 AA5 9 LYS B 266 ILE B 271 1 O LYS B 270 N LEU B 235 SHEET 6 AA5 9 GLY B 289 VAL B 292 1 O MET B 291 N SER B 269 SHEET 7 AA5 9 VAL B 324 THR B 326 1 O VAL B 325 N ILE B 290 SHEET 8 AA5 9 CYS B 358 LEU B 361 1 O CYS B 358 N THR B 326 SHEET 9 AA5 9 GLN B 47 THR B 51 1 N ILE B 49 O LEU B 361 SHEET 1 AA6 7 ILE B 115 ARG B 116 0 SHEET 2 AA6 7 ASN B 200 ASN B 202 -1 O MET B 201 N ILE B 115 SHEET 3 AA6 7 THR B 165 ILE B 168 -1 N LEU B 167 O ASN B 202 SHEET 4 AA6 7 LEU B 173 ILE B 180 -1 O THR B 175 N VAL B 166 SHEET 5 AA6 7 PHE B 184 VAL B 189 -1 O LYS B 188 N GLN B 176 SHEET 6 AA6 7 THR B 133 THR B 137 -1 N LEU B 134 O CYS B 187 SHEET 7 AA6 7 CYS B 148 SER B 150 1 O ILE B 149 N LYS B 135 SHEET 1 AA7 5 VAL B 469 VAL B 473 0 SHEET 2 AA7 5 THR B 449 THR B 454 1 N ILE B 450 O LYS B 470 SHEET 3 AA7 5 LEU B 427 ILE B 431 1 N THR B 430 O CYS B 453 SHEET 4 AA7 5 PHE B 502 VAL B 509 1 O ILE B 504 N ILE B 429 SHEET 5 AA7 5 CYS B 517 ARG B 524 -1 O LYS B 521 N ALA B 505 SSBOND 1 CYS A 26 CYS B 312 1555 1555 2.04 SSBOND 2 CYS A 312 CYS B 26 1555 1555 2.04 SSBOND 3 CYS A 513 CYS A 517 1555 1555 2.03 SSBOND 4 CYS B 513 CYS B 517 1555 1555 2.02 LINK OD1 ASN A 76 K K A 603 1555 1555 2.81 LINK OG SER A 78 K K A 603 1555 1555 2.76 LINK OD1 ASP A 109 K K A 603 1555 1555 2.90 LINK O THR A 110 K K A 603 1555 1555 2.81 LINK O3B ADP A 601 MG MG A 602 1555 1555 2.48 LINK O2A ADP A 601 MG MG A 602 1555 1555 2.37 LINK MG MG A 602 O HOH A 760 1555 1555 2.56 LINK MG MG A 602 O HOH A 789 1555 1555 2.33 LINK OD1 ASN B 76 K K B 603 1555 1555 2.77 LINK OG SER B 78 K K B 603 1555 1555 2.83 LINK OD1 ASP B 109 K K B 603 1555 1555 2.86 LINK O THR B 110 K K B 603 1555 1555 2.77 LINK O2B ADP B 601 MG MG B 602 1555 1555 2.28 LINK O1A ADP B 601 MG MG B 602 1555 1555 2.52 LINK MG MG B 602 O HOH B 709 1555 1555 1.96 LINK MG MG B 602 O HOH B 774 1555 1555 2.50 LINK K K B 603 O HOH B 780 1555 1555 2.83 CISPEP 1 LYS A 404 PRO A 405 0 -2.76 CISPEP 2 CYS A 513 PRO A 514 0 9.31 CISPEP 3 LYS B 404 PRO B 405 0 -2.49 CISPEP 4 CYS B 513 PRO B 514 0 8.98 SITE 1 AC1 13 THR A 51 PRO A 54 ARG A 74 ASN A 76 SITE 2 AC1 13 HIS A 79 ARG A 116 SER A 362 GLY A 363 SITE 3 AC1 13 ALA A 366 ASN A 367 MG A 602 HOH A 718 SITE 4 AC1 13 HOH A 760 SITE 1 AC2 4 ASP A 170 ADP A 601 HOH A 760 HOH A 789 SITE 1 AC3 5 ASN A 76 SER A 78 ASP A 109 THR A 110 SITE 2 AC3 5 SER A 236 SITE 1 AC4 3 THR A 103 LYS A 464 THR A 471 SITE 1 AC5 17 THR B 51 ILE B 52 PRO B 54 ARG B 74 SITE 2 AC5 17 ASN B 76 HIS B 79 GLY B 80 ARG B 116 SITE 3 AC5 17 SER B 362 ALA B 366 ASN B 367 MG B 602 SITE 4 AC5 17 HOH B 709 HOH B 744 HOH B 746 HOH B 774 SITE 5 AC5 17 HOH B 775 SITE 1 AC6 4 ASP B 170 ADP B 601 HOH B 709 HOH B 774 SITE 1 AC7 6 ASN B 76 SER B 78 ASP B 109 THR B 110 SITE 2 AC7 6 SER B 236 HOH B 780 SITE 1 AC8 3 THR B 103 LYS B 464 THR B 471 CRYST1 133.465 105.305 83.453 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007493 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011983 0.00000