HEADER DNA BINDING PROTEIN/DNA 19-MAY-19 6P1H TITLE CRYO-EM STRUCTURE OF DNA POLYMERASE DELTA HOLOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE DELTA CATALYTIC SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA POLYMERASE III; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA POLYMERASE DELTA SMALL SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: HYDROXYUREA-SENSITIVE PROTEIN 2; COMPND 11 EC: 2.7.7.7; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA POLYMERASE DELTA SUBUNIT 3; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (30-MER); COMPND 19 CHAIN: P, T; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 VARIANT: ATCC 204508 / S288C; SOURCE 8 GENE: POL3, CDC2, TEX1, YDL102W, D2366; SOURCE 9 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 13 S288C); SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 VARIANT: ATCC 204508 / S288C; SOURCE 18 GENE: POL31, HUS2, HYS2, SDP5, YJR006W, J1427, YJR83.7; SOURCE 19 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 23 S288C); SOURCE 24 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 25 ORGANISM_TAXID: 559292; SOURCE 26 STRAIN: ATCC 204508 / S288C; SOURCE 27 VARIANT: ATCC 204508 / S288C; SOURCE 28 GENE: POL32, YJR043C, J1626; SOURCE 29 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 31 MOL_ID: 4; SOURCE 32 SYNTHETIC: YES; SOURCE 33 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 34 ORGANISM_TAXID: 32630 KEYWDS DNA BINDING, ENZYME, CATALYSIS, REGULATION, DNA BINDING PROTEIN, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR R.JAIN,W.RICE,A.K.AGGARWAL REVDAT 4 20-MAR-24 6P1H 1 LINK REVDAT 3 18-DEC-19 6P1H 1 CRYST1 SCALE REVDAT 2 16-OCT-19 6P1H 1 JRNL REVDAT 1 02-OCT-19 6P1H 0 JRNL AUTH R.JAIN,W.J.RICE,R.MALIK,R.E.JOHNSON,L.PRAKASH,S.PRAKASH, JRNL AUTH 2 I.UBARRETXENA-BELANDIA,A.K.AGGARWAL JRNL TITL CRYO-EM STRUCTURE AND DYNAMICS OF EUKARYOTIC DNA POLYMERASE JRNL TITL 2 DELTA HOLOENZYME. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 955 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31582849 JRNL DOI 10.1038/S41594-019-0305-Z REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : LEGINON, CTFFIND, PHENIX, RELION, REMARK 3 PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 166444 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6P1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241726. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ENZYMATIC COMPLEX WITH LIGANDS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.20 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6400.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -147.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 ASP A -20 REMARK 465 TYR A -19 REMARK 465 LYS A -18 REMARK 465 ASP A -17 REMARK 465 ASP A -16 REMARK 465 ASP A -15 REMARK 465 ASP A -14 REMARK 465 LYS A -13 REMARK 465 GLY A -12 REMARK 465 ASP A -11 REMARK 465 HIS A -10 REMARK 465 ASN A -9 REMARK 465 HIS A -8 REMARK 465 ARG A -7 REMARK 465 HIS A -6 REMARK 465 LYS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 PRO A 8 REMARK 465 MET A 9 REMARK 465 VAL A 10 REMARK 465 ASP A 11 REMARK 465 VAL A 12 REMARK 465 LYS A 13 REMARK 465 ILE A 14 REMARK 465 ASP A 15 REMARK 465 ASP A 16 REMARK 465 GLU A 17 REMARK 465 ASP A 18 REMARK 465 THR A 19 REMARK 465 PRO A 20 REMARK 465 GLN A 21 REMARK 465 LEU A 22 REMARK 465 GLU A 23 REMARK 465 LYS A 24 REMARK 465 LYS A 25 REMARK 465 ILE A 26 REMARK 465 LYS A 27 REMARK 465 ARG A 28 REMARK 465 GLN A 29 REMARK 465 SER A 30 REMARK 465 ILE A 31 REMARK 465 ASP A 32 REMARK 465 HIS A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 GLU A 38 REMARK 465 PRO A 39 REMARK 465 VAL A 40 REMARK 465 SER A 41 REMARK 465 THR A 42 REMARK 465 ILE A 43 REMARK 465 GLU A 44 REMARK 465 ILE A 45 REMARK 465 ILE A 46 REMARK 465 PRO A 47 REMARK 465 SER A 48 REMARK 465 ASP A 49 REMARK 465 SER A 50 REMARK 465 PHE A 51 REMARK 465 ARG A 52 REMARK 465 LYS A 53 REMARK 465 TYR A 54 REMARK 465 ASN A 55 REMARK 465 SER A 56 REMARK 465 GLN A 57 REMARK 465 GLY A 58 REMARK 465 PHE A 59 REMARK 465 LYS A 60 REMARK 465 ALA A 61 REMARK 465 LYS A 62 REMARK 465 ASP A 63 REMARK 465 THR A 64 REMARK 465 ASP A 65 REMARK 465 LEU A 66 REMARK 465 MET A 67 REMARK 465 GLY A 68 REMARK 465 THR A 69 REMARK 465 GLN A 70 REMARK 465 LEU A 71 REMARK 465 GLU A 72 REMARK 465 SER A 73 REMARK 465 THR A 74 REMARK 465 PHE A 75 REMARK 465 GLU A 76 REMARK 465 GLN A 77 REMARK 465 GLU A 78 REMARK 465 LEU A 79 REMARK 465 SER A 80 REMARK 465 GLN A 81 REMARK 465 MET A 82 REMARK 465 GLU A 83 REMARK 465 HIS A 84 REMARK 465 ASP A 85 REMARK 465 MET A 86 REMARK 465 ALA A 87 REMARK 465 ASP A 88 REMARK 465 GLN A 89 REMARK 465 GLU A 90 REMARK 465 GLU A 91 REMARK 465 HIS A 92 REMARK 465 ASP A 93 REMARK 465 VAL A 985 REMARK 465 LYS A 986 REMARK 465 SER A 987 REMARK 465 ILE A 988 REMARK 465 LYS A 989 REMARK 465 ILE A 990 REMARK 465 ASN A 991 REMARK 465 THR A 992 REMARK 465 GLY A 993 REMARK 465 SER A 994 REMARK 465 GLN A 995 REMARK 465 LYS A 996 REMARK 465 GLY A 997 REMARK 465 GLY A 998 REMARK 465 LEU A 999 REMARK 465 MET A 1000 REMARK 465 SER A 1001 REMARK 465 PHE A 1002 REMARK 465 ILE A 1003 REMARK 465 LYS A 1004 REMARK 465 LYS A 1005 REMARK 465 VAL A 1006 REMARK 465 GLU A 1007 REMARK 465 ALA A 1008 REMARK 465 CYS A 1009 REMARK 465 LYS A 1010 REMARK 465 SER A 1011 REMARK 465 CYS A 1012 REMARK 465 LYS A 1013 REMARK 465 GLY A 1014 REMARK 465 PRO A 1015 REMARK 465 LEU A 1016 REMARK 465 ARG A 1017 REMARK 465 LYS A 1018 REMARK 465 GLY A 1019 REMARK 465 GLU A 1020 REMARK 465 GLY A 1021 REMARK 465 PRO A 1022 REMARK 465 LEU A 1023 REMARK 465 CYS A 1024 REMARK 465 SER A 1025 REMARK 465 ASN A 1026 REMARK 465 CYS A 1027 REMARK 465 LEU A 1028 REMARK 465 ALA A 1029 REMARK 465 GLY B -6 REMARK 465 PRO B -5 REMARK 465 GLY B -4 REMARK 465 GLY B -3 REMARK 465 ASP B -2 REMARK 465 LEU B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 ILE B 205 REMARK 465 ALA B 206 REMARK 465 THR B 207 REMARK 465 CYS B 208 REMARK 465 PRO B 209 REMARK 465 GLY B 374 REMARK 465 GLU B 375 REMARK 465 SER B 376 REMARK 465 GLU B 377 REMARK 465 ASN B 378 REMARK 465 LYS B 379 REMARK 465 VAL B 380 REMARK 465 GLU B 381 REMARK 465 ILE B 487 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 GLN C 3 REMARK 465 LYS C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 117 REMARK 465 SER C 118 REMARK 465 GLU C 119 REMARK 465 SER C 120 REMARK 465 SER C 121 REMARK 465 LYS C 122 REMARK 465 ILE C 123 REMARK 465 ILE C 124 REMARK 465 GLU C 125 REMARK 465 ARG C 126 REMARK 465 THR C 127 REMARK 465 LYS C 128 REMARK 465 THR C 129 REMARK 465 LEU C 130 REMARK 465 GLU C 131 REMARK 465 GLU C 132 REMARK 465 LYS C 133 REMARK 465 SER C 134 REMARK 465 LYS C 135 REMARK 465 PRO C 136 REMARK 465 LEU C 137 REMARK 465 VAL C 138 REMARK 465 ARG C 139 REMARK 465 PRO C 140 REMARK 465 THR C 141 REMARK 465 ALA C 142 REMARK 465 ARG C 143 REMARK 465 SER C 144 REMARK 465 LYS C 145 REMARK 465 THR C 146 REMARK 465 THR C 147 REMARK 465 PRO C 148 REMARK 465 GLU C 149 REMARK 465 GLU C 150 REMARK 465 THR C 151 REMARK 465 THR C 152 REMARK 465 GLY C 153 REMARK 465 ARG C 154 REMARK 465 LYS C 155 REMARK 465 SER C 156 REMARK 465 LYS C 157 REMARK 465 SER C 158 REMARK 465 LYS C 159 REMARK 465 ASP C 160 REMARK 465 MET C 161 REMARK 465 GLY C 162 REMARK 465 LEU C 163 REMARK 465 ARG C 164 REMARK 465 SER C 165 REMARK 465 THR C 166 REMARK 465 ALA C 167 REMARK 465 LEU C 168 REMARK 465 LEU C 169 REMARK 465 ALA C 170 REMARK 465 LYS C 171 REMARK 465 MET C 172 REMARK 465 LYS C 173 REMARK 465 LYS C 174 REMARK 465 ASP C 175 REMARK 465 ARG C 176 REMARK 465 ASP C 177 REMARK 465 ASP C 178 REMARK 465 LYS C 179 REMARK 465 GLU C 180 REMARK 465 THR C 181 REMARK 465 SER C 182 REMARK 465 ARG C 183 REMARK 465 GLN C 184 REMARK 465 ASN C 185 REMARK 465 GLU C 186 REMARK 465 LEU C 187 REMARK 465 ARG C 188 REMARK 465 LYS C 189 REMARK 465 ARG C 190 REMARK 465 LYS C 191 REMARK 465 GLU C 192 REMARK 465 GLU C 193 REMARK 465 ASN C 194 REMARK 465 LEU C 195 REMARK 465 GLN C 196 REMARK 465 LYS C 197 REMARK 465 ILE C 198 REMARK 465 ASN C 199 REMARK 465 LYS C 200 REMARK 465 GLN C 201 REMARK 465 ASN C 202 REMARK 465 PRO C 203 REMARK 465 GLU C 204 REMARK 465 ARG C 205 REMARK 465 GLU C 206 REMARK 465 ALA C 207 REMARK 465 GLN C 208 REMARK 465 MET C 209 REMARK 465 LYS C 210 REMARK 465 GLU C 211 REMARK 465 LEU C 212 REMARK 465 ASN C 213 REMARK 465 ASN C 214 REMARK 465 LEU C 215 REMARK 465 PHE C 216 REMARK 465 VAL C 217 REMARK 465 GLU C 218 REMARK 465 ASP C 219 REMARK 465 ASP C 220 REMARK 465 LEU C 221 REMARK 465 ASP C 222 REMARK 465 THR C 223 REMARK 465 GLU C 224 REMARK 465 GLU C 225 REMARK 465 VAL C 226 REMARK 465 ASN C 227 REMARK 465 GLY C 228 REMARK 465 GLY C 229 REMARK 465 SER C 230 REMARK 465 LYS C 231 REMARK 465 PRO C 232 REMARK 465 ASN C 233 REMARK 465 SER C 234 REMARK 465 PRO C 235 REMARK 465 LYS C 236 REMARK 465 GLU C 237 REMARK 465 THR C 238 REMARK 465 ASP C 239 REMARK 465 SER C 240 REMARK 465 ASN C 241 REMARK 465 ASP C 242 REMARK 465 LYS C 243 REMARK 465 ASP C 244 REMARK 465 LYS C 245 REMARK 465 ASN C 246 REMARK 465 ASN C 247 REMARK 465 ASP C 248 REMARK 465 ASP C 249 REMARK 465 LEU C 250 REMARK 465 GLU C 251 REMARK 465 ASP C 252 REMARK 465 LEU C 253 REMARK 465 LEU C 254 REMARK 465 GLU C 255 REMARK 465 THR C 256 REMARK 465 THR C 257 REMARK 465 ALA C 258 REMARK 465 GLU C 259 REMARK 465 ASP C 260 REMARK 465 SER C 261 REMARK 465 LEU C 262 REMARK 465 MET C 263 REMARK 465 ASP C 264 REMARK 465 VAL C 265 REMARK 465 PRO C 266 REMARK 465 LYS C 267 REMARK 465 ILE C 268 REMARK 465 GLN C 269 REMARK 465 GLN C 270 REMARK 465 THR C 271 REMARK 465 LYS C 272 REMARK 465 PRO C 273 REMARK 465 SER C 274 REMARK 465 GLU C 275 REMARK 465 THR C 276 REMARK 465 GLU C 277 REMARK 465 HIS C 278 REMARK 465 SER C 279 REMARK 465 LYS C 280 REMARK 465 GLU C 281 REMARK 465 PRO C 282 REMARK 465 LYS C 283 REMARK 465 SER C 284 REMARK 465 GLU C 285 REMARK 465 GLU C 286 REMARK 465 GLU C 287 REMARK 465 PRO C 288 REMARK 465 SER C 289 REMARK 465 SER C 290 REMARK 465 PHE C 291 REMARK 465 ILE C 292 REMARK 465 ASP C 293 REMARK 465 GLU C 294 REMARK 465 ASP C 295 REMARK 465 GLY C 296 REMARK 465 TYR C 297 REMARK 465 ILE C 298 REMARK 465 VAL C 299 REMARK 465 THR C 300 REMARK 465 LYS C 301 REMARK 465 ARG C 302 REMARK 465 PRO C 303 REMARK 465 ALA C 304 REMARK 465 THR C 305 REMARK 465 SER C 306 REMARK 465 THR C 307 REMARK 465 PRO C 308 REMARK 465 PRO C 309 REMARK 465 ARG C 310 REMARK 465 LYS C 311 REMARK 465 PRO C 312 REMARK 465 SER C 313 REMARK 465 PRO C 314 REMARK 465 VAL C 315 REMARK 465 VAL C 316 REMARK 465 LYS C 317 REMARK 465 ARG C 318 REMARK 465 ALA C 319 REMARK 465 LEU C 320 REMARK 465 SER C 321 REMARK 465 SER C 322 REMARK 465 SER C 323 REMARK 465 LYS C 324 REMARK 465 LYS C 325 REMARK 465 GLN C 326 REMARK 465 GLU C 327 REMARK 465 THR C 328 REMARK 465 PRO C 329 REMARK 465 SER C 330 REMARK 465 SER C 331 REMARK 465 ASN C 332 REMARK 465 LYS C 333 REMARK 465 ARG C 334 REMARK 465 LEU C 335 REMARK 465 LYS C 336 REMARK 465 LYS C 337 REMARK 465 GLN C 338 REMARK 465 GLY C 339 REMARK 465 THR C 340 REMARK 465 LEU C 341 REMARK 465 GLU C 342 REMARK 465 SER C 343 REMARK 465 PHE C 344 REMARK 465 PHE C 345 REMARK 465 LYS C 346 REMARK 465 ARG C 347 REMARK 465 LYS C 348 REMARK 465 ALA C 349 REMARK 465 LYS C 350 REMARK 465 DT P 1 REMARK 465 DA P 2 REMARK 465 DA P 3 REMARK 465 DT P 4 REMARK 465 DG P 5 REMARK 465 DG P 6 REMARK 465 DT P 7 REMARK 465 DA P 8 REMARK 465 DG P 9 REMARK 465 DG P 10 REMARK 465 DG P 11 REMARK 465 DG P 12 REMARK 465 DA P 13 REMARK 465 DG P 14 REMARK 465 DG P 15 REMARK 465 DA P 16 REMARK 465 DA P 17 REMARK 465 DA P 18 REMARK 465 DT T 1 REMARK 465 DA T 2 REMARK 465 DA T 18 REMARK 465 DT T 19 REMARK 465 DT T 20 REMARK 465 DC T 21 REMARK 465 DC T 22 REMARK 465 DT T 23 REMARK 465 DC T 24 REMARK 465 DC T 25 REMARK 465 DC T 26 REMARK 465 DC T 27 REMARK 465 DT T 28 REMARK 465 DA T 29 REMARK 465 DC T 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A1087 CG CD1 CD2 REMARK 470 DC P 30 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 832 OG SER A 837 2.02 REMARK 500 OD2 ASP B 297 OH TYR B 347 2.17 REMARK 500 OH TYR B 44 OD1 ASP B 307 2.18 REMARK 500 O ASP A 337 OH TYR A 410 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 95 -7.82 70.98 REMARK 500 LEU A 110 -4.09 67.80 REMARK 500 ASN A 132 -0.54 70.70 REMARK 500 ASP A 585 -65.97 -101.10 REMARK 500 GLN A 586 161.84 178.12 REMARK 500 ASP A 641 -1.03 64.53 REMARK 500 PRO A 648 -6.14 -56.38 REMARK 500 LEU A 721 49.19 -80.64 REMARK 500 TYR A 730 -12.07 81.67 REMARK 500 TYR A 760 -165.76 -160.60 REMARK 500 THR A 763 -22.46 74.05 REMARK 500 ASP A 764 -25.27 -146.19 REMARK 500 ALA A 836 0.72 -62.44 REMARK 500 TYR A1078 -11.30 70.42 REMARK 500 ASP B 16 58.92 35.05 REMARK 500 ASN B 18 -5.66 79.88 REMARK 500 LEU B 19 -68.21 -102.16 REMARK 500 SER B 20 -34.73 62.28 REMARK 500 GLN B 21 160.09 159.91 REMARK 500 PRO B 22 -76.16 -75.37 REMARK 500 ARG B 23 60.82 24.29 REMARK 500 LEU B 86 -75.14 -44.20 REMARK 500 VAL B 87 29.02 -141.85 REMARK 500 LEU B 88 -57.03 -22.64 REMARK 500 LYS B 89 -176.69 -175.00 REMARK 500 ASP B 131 42.11 -105.59 REMARK 500 THR B 133 59.36 34.39 REMARK 500 ALA B 180 -60.83 -93.82 REMARK 500 ALA B 182 -7.08 71.02 REMARK 500 PRO B 193 171.91 -59.57 REMARK 500 ASP B 228 -5.47 75.64 REMARK 500 ASN B 245 -169.16 -126.54 REMARK 500 ASP B 249 -8.22 75.31 REMARK 500 PRO B 305 69.94 -69.14 REMARK 500 PRO B 311 56.92 -69.98 REMARK 500 LEU B 338 70.64 59.06 REMARK 500 PHE B 388 60.02 64.89 REMARK 500 ASP B 390 -78.84 -82.94 REMARK 500 ASP B 391 92.33 -173.06 REMARK 500 ILE B 392 -63.62 -137.34 REMARK 500 TRP B 405 108.97 -55.61 REMARK 500 PRO B 420 83.13 -69.31 REMARK 500 ASP B 423 -1.69 78.00 REMARK 500 SER B 465 -60.51 -91.20 REMARK 500 ASN C 10 -55.11 -126.00 REMARK 500 LEU C 13 -54.65 -121.99 REMARK 500 VAL C 17 -28.80 -34.62 REMARK 500 HIS C 28 -60.74 -96.33 REMARK 500 HIS C 69 -7.62 63.71 REMARK 500 ASP C 70 -2.05 57.30 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 20 GLN B 21 142.93 REMARK 500 GLN B 21 PRO B 22 147.82 REMARK 500 PRO B 22 ARG B 23 131.31 REMARK 500 GLN B 85 LEU B 86 -139.58 REMARK 500 VAL B 87 LEU B 88 -122.71 REMARK 500 ASP B 390 ASP B 391 146.31 REMARK 500 ILE C 9 ASN C 10 147.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1106 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 321 OD1 REMARK 620 2 ASP A 321 OD2 55.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 608 OD2 REMARK 620 2 PHE A 609 O 99.4 REMARK 620 3 ASP A 764 OD2 123.6 102.3 REMARK 620 4 DCP A1102 O1A 120.0 139.3 65.5 REMARK 620 5 DCP A1102 O1B 143.4 93.1 86.3 49.3 REMARK 620 6 DCP A1102 O1G 99.2 66.3 137.2 95.6 55.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 608 OD1 REMARK 620 2 GLU A 800 OE1 104.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1101 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1056 SG REMARK 620 2 SF4 A1101 S1 138.2 REMARK 620 3 SF4 A1101 S2 106.4 104.0 REMARK 620 4 SF4 A1101 S4 95.6 104.0 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1101 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1059 SG REMARK 620 2 SF4 A1101 S1 117.6 REMARK 620 3 SF4 A1101 S2 96.3 104.2 REMARK 620 4 SF4 A1101 S3 127.0 104.0 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1069 SG REMARK 620 2 SF4 A1101 S2 136.6 REMARK 620 3 SF4 A1101 S3 94.7 104.0 REMARK 620 4 SF4 A1101 S4 108.7 104.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1074 SG REMARK 620 2 SF4 A1101 S1 90.0 REMARK 620 3 SF4 A1101 S3 104.0 104.0 REMARK 620 4 SF4 A1101 S4 144.3 104.0 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA T 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG T 10 OP2 REMARK 620 2 HOH T 201 O 140.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCP A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA T 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-20235 RELATED DB: EMDB REMARK 900 STRUCTURE OF A COMPLEX DBREF 6P1H A 1 1097 UNP P15436 DPOD_YEAST 1 1097 DBREF 6P1H B 1 487 UNP P46957 DPOD2_YEAST 1 487 DBREF 6P1H C 1 350 UNP P47110 DPOD3_YEAST 1 350 DBREF 6P1H P 1 30 PDB 6P1H 6P1H 1 30 DBREF 6P1H T 1 30 PDB 6P1H 6P1H 1 30 SEQADV 6P1H MET A -21 UNP P15436 INITIATING METHIONINE SEQADV 6P1H ASP A -20 UNP P15436 EXPRESSION TAG SEQADV 6P1H TYR A -19 UNP P15436 EXPRESSION TAG SEQADV 6P1H LYS A -18 UNP P15436 EXPRESSION TAG SEQADV 6P1H ASP A -17 UNP P15436 EXPRESSION TAG SEQADV 6P1H ASP A -16 UNP P15436 EXPRESSION TAG SEQADV 6P1H ASP A -15 UNP P15436 EXPRESSION TAG SEQADV 6P1H ASP A -14 UNP P15436 EXPRESSION TAG SEQADV 6P1H LYS A -13 UNP P15436 EXPRESSION TAG SEQADV 6P1H GLY A -12 UNP P15436 EXPRESSION TAG SEQADV 6P1H ASP A -11 UNP P15436 EXPRESSION TAG SEQADV 6P1H HIS A -10 UNP P15436 EXPRESSION TAG SEQADV 6P1H ASN A -9 UNP P15436 EXPRESSION TAG SEQADV 6P1H HIS A -8 UNP P15436 EXPRESSION TAG SEQADV 6P1H ARG A -7 UNP P15436 EXPRESSION TAG SEQADV 6P1H HIS A -6 UNP P15436 EXPRESSION TAG SEQADV 6P1H LYS A -5 UNP P15436 EXPRESSION TAG SEQADV 6P1H HIS A -4 UNP P15436 EXPRESSION TAG SEQADV 6P1H GLY A -3 UNP P15436 EXPRESSION TAG SEQADV 6P1H ASP A -2 UNP P15436 EXPRESSION TAG SEQADV 6P1H PRO A -1 UNP P15436 EXPRESSION TAG SEQADV 6P1H HIS A 0 UNP P15436 EXPRESSION TAG SEQADV 6P1H GLY B -6 UNP P46957 EXPRESSION TAG SEQADV 6P1H PRO B -5 UNP P46957 EXPRESSION TAG SEQADV 6P1H GLY B -4 UNP P46957 EXPRESSION TAG SEQADV 6P1H GLY B -3 UNP P46957 EXPRESSION TAG SEQADV 6P1H ASP B -2 UNP P46957 EXPRESSION TAG SEQADV 6P1H LEU B -1 UNP P46957 EXPRESSION TAG SEQADV 6P1H HIS B 0 UNP P46957 EXPRESSION TAG SEQRES 1 A 1119 MET ASP TYR LYS ASP ASP ASP ASP LYS GLY ASP HIS ASN SEQRES 2 A 1119 HIS ARG HIS LYS HIS GLY ASP PRO HIS MET SER GLU LYS SEQRES 3 A 1119 ARG SER LEU PRO MET VAL ASP VAL LYS ILE ASP ASP GLU SEQRES 4 A 1119 ASP THR PRO GLN LEU GLU LYS LYS ILE LYS ARG GLN SER SEQRES 5 A 1119 ILE ASP HIS GLY VAL GLY SER GLU PRO VAL SER THR ILE SEQRES 6 A 1119 GLU ILE ILE PRO SER ASP SER PHE ARG LYS TYR ASN SER SEQRES 7 A 1119 GLN GLY PHE LYS ALA LYS ASP THR ASP LEU MET GLY THR SEQRES 8 A 1119 GLN LEU GLU SER THR PHE GLU GLN GLU LEU SER GLN MET SEQRES 9 A 1119 GLU HIS ASP MET ALA ASP GLN GLU GLU HIS ASP LEU SER SEQRES 10 A 1119 SER PHE GLU ARG LYS LYS LEU PRO THR ASP PHE ASP PRO SEQRES 11 A 1119 SER LEU TYR ASP ILE SER PHE GLN GLN ILE ASP ALA GLU SEQRES 12 A 1119 GLN SER VAL LEU ASN GLY ILE LYS ASP GLU ASN THR SER SEQRES 13 A 1119 THR VAL VAL ARG PHE PHE GLY VAL THR SER GLU GLY HIS SEQRES 14 A 1119 SER VAL LEU CYS ASN VAL THR GLY PHE LYS ASN TYR LEU SEQRES 15 A 1119 TYR VAL PRO ALA PRO ASN SER SER ASP ALA ASN ASP GLN SEQRES 16 A 1119 GLU GLN ILE ASN LYS PHE VAL HIS TYR LEU ASN GLU THR SEQRES 17 A 1119 PHE ASP HIS ALA ILE ASP SER ILE GLU VAL VAL SER LYS SEQRES 18 A 1119 GLN SER ILE TRP GLY TYR SER GLY ASP THR LYS LEU PRO SEQRES 19 A 1119 PHE TRP LYS ILE TYR VAL THR TYR PRO HIS MET VAL ASN SEQRES 20 A 1119 LYS LEU ARG THR ALA PHE GLU ARG GLY HIS LEU SER PHE SEQRES 21 A 1119 ASN SER TRP PHE SER ASN GLY THR THR THR TYR ASP ASN SEQRES 22 A 1119 ILE ALA TYR THR LEU ARG LEU MET VAL ASP CYS GLY ILE SEQRES 23 A 1119 VAL GLY MET SER TRP ILE THR LEU PRO LYS GLY LYS TYR SEQRES 24 A 1119 SER MET ILE GLU PRO ASN ASN ARG VAL SER SER CYS GLN SEQRES 25 A 1119 LEU GLU VAL SER ILE ASN TYR ARG ASN LEU ILE ALA HIS SEQRES 26 A 1119 PRO ALA GLU GLY ASP TRP SER HIS THR ALA PRO LEU ARG SEQRES 27 A 1119 ILE MET SER PHE ASP ILE GLU CYS ALA GLY ARG ILE GLY SEQRES 28 A 1119 VAL PHE PRO GLU PRO GLU TYR ASP PRO VAL ILE GLN ILE SEQRES 29 A 1119 ALA ASN VAL VAL SER ILE ALA GLY ALA LYS LYS PRO PHE SEQRES 30 A 1119 ILE ARG ASN VAL PHE THR LEU ASN THR CYS SER PRO ILE SEQRES 31 A 1119 THR GLY SER MET ILE PHE SER HIS ALA THR GLU GLU GLU SEQRES 32 A 1119 MET LEU SER ASN TRP ARG ASN PHE ILE ILE LYS VAL ASP SEQRES 33 A 1119 PRO ASP VAL ILE ILE GLY TYR ASN THR THR ASN PHE ASP SEQRES 34 A 1119 ILE PRO TYR LEU LEU ASN ARG ALA LYS ALA LEU LYS VAL SEQRES 35 A 1119 ASN ASP PHE PRO TYR PHE GLY ARG LEU LYS THR VAL LYS SEQRES 36 A 1119 GLN GLU ILE LYS GLU SER VAL PHE SER SER LYS ALA TYR SEQRES 37 A 1119 GLY THR ARG GLU THR LYS ASN VAL ASN ILE ASP GLY ARG SEQRES 38 A 1119 LEU GLN LEU ASP LEU LEU GLN PHE ILE GLN ARG GLU TYR SEQRES 39 A 1119 LYS LEU ARG SER TYR THR LEU ASN ALA VAL SER ALA HIS SEQRES 40 A 1119 PHE LEU GLY GLU GLN LYS GLU ASP VAL HIS TYR SER ILE SEQRES 41 A 1119 ILE SER ASP LEU GLN ASN GLY ASP SER GLU THR ARG ARG SEQRES 42 A 1119 ARG LEU ALA VAL TYR CYS LEU LYS ASP ALA TYR LEU PRO SEQRES 43 A 1119 LEU ARG LEU MET GLU LYS LEU MET ALA LEU VAL ASN TYR SEQRES 44 A 1119 THR GLU MET ALA ARG VAL THR GLY VAL PRO PHE SER TYR SEQRES 45 A 1119 LEU LEU ALA ARG GLY GLN GLN ILE LYS VAL VAL SER GLN SEQRES 46 A 1119 LEU PHE ARG LYS CYS LEU GLU ILE ASP THR VAL ILE PRO SEQRES 47 A 1119 ASN MET GLN SER GLN ALA SER ASP ASP GLN TYR GLU GLY SEQRES 48 A 1119 ALA THR VAL ILE GLU PRO ILE ARG GLY TYR TYR ASP VAL SEQRES 49 A 1119 PRO ILE ALA THR LEU ASP PHE ASN SER LEU TYR PRO SER SEQRES 50 A 1119 ILE MET MET ALA HIS ASN LEU CYS TYR THR THR LEU CYS SEQRES 51 A 1119 ASN LYS ALA THR VAL GLU ARG LEU ASN LEU LYS ILE ASP SEQRES 52 A 1119 GLU ASP TYR VAL ILE THR PRO ASN GLY ASP TYR PHE VAL SEQRES 53 A 1119 THR THR LYS ARG ARG ARG GLY ILE LEU PRO ILE ILE LEU SEQRES 54 A 1119 ASP GLU LEU ILE SER ALA ARG LYS ARG ALA LYS LYS ASP SEQRES 55 A 1119 LEU ARG ASP GLU LYS ASP PRO PHE LYS ARG ASP VAL LEU SEQRES 56 A 1119 ASN GLY ARG GLN LEU ALA LEU LYS ILE SER ALA ASN SER SEQRES 57 A 1119 VAL TYR GLY PHE THR GLY ALA THR VAL GLY LYS LEU PRO SEQRES 58 A 1119 CYS LEU ALA ILE SER SER SER VAL THR ALA TYR GLY ARG SEQRES 59 A 1119 THR MET ILE LEU LYS THR LYS THR ALA VAL GLN GLU LYS SEQRES 60 A 1119 TYR CYS ILE LYS ASN GLY TYR LYS HIS ASP ALA VAL VAL SEQRES 61 A 1119 VAL TYR GLY ASP THR ASP SER VAL MET VAL LYS PHE GLY SEQRES 62 A 1119 THR THR ASP LEU LYS GLU ALA MET ASP LEU GLY THR GLU SEQRES 63 A 1119 ALA ALA LYS TYR VAL SER THR LEU PHE LYS HIS PRO ILE SEQRES 64 A 1119 ASN LEU GLU PHE GLU LYS ALA TYR PHE PRO TYR LEU LEU SEQRES 65 A 1119 ILE ASN LYS LYS ARG TYR ALA GLY LEU PHE TRP THR ASN SEQRES 66 A 1119 PRO ASP LYS PHE ASP LYS LEU ASP GLN LYS GLY LEU ALA SEQRES 67 A 1119 SER VAL ARG ARG ASP SER CYS SER LEU VAL SER ILE VAL SEQRES 68 A 1119 MET ASN LYS VAL LEU LYS LYS ILE LEU ILE GLU ARG ASN SEQRES 69 A 1119 VAL ASP GLY ALA LEU ALA PHE VAL ARG GLU THR ILE ASN SEQRES 70 A 1119 ASP ILE LEU HIS ASN ARG VAL ASP ILE SER LYS LEU ILE SEQRES 71 A 1119 ILE SER LYS THR LEU ALA PRO ASN TYR THR ASN PRO GLN SEQRES 72 A 1119 PRO HIS ALA VAL LEU ALA GLU ARG MET LYS ARG ARG GLU SEQRES 73 A 1119 GLY VAL GLY PRO ASN VAL GLY ASP ARG VAL ASP TYR VAL SEQRES 74 A 1119 ILE ILE GLY GLY ASN ASP LYS LEU TYR ASN ARG ALA GLU SEQRES 75 A 1119 ASP PRO LEU PHE VAL LEU GLU ASN ASN ILE GLN VAL ASP SEQRES 76 A 1119 SER ARG TYR TYR LEU THR ASN GLN LEU GLN ASN PRO ILE SEQRES 77 A 1119 ILE SER ILE VAL ALA PRO ILE ILE GLY ASP LYS GLN ALA SEQRES 78 A 1119 ASN GLY MET PHE VAL VAL LYS SER ILE LYS ILE ASN THR SEQRES 79 A 1119 GLY SER GLN LYS GLY GLY LEU MET SER PHE ILE LYS LYS SEQRES 80 A 1119 VAL GLU ALA CYS LYS SER CYS LYS GLY PRO LEU ARG LYS SEQRES 81 A 1119 GLY GLU GLY PRO LEU CYS SER ASN CYS LEU ALA ARG SER SEQRES 82 A 1119 GLY GLU LEU TYR ILE LYS ALA LEU TYR ASP VAL ARG ASP SEQRES 83 A 1119 LEU GLU GLU LYS TYR SER ARG LEU TRP THR GLN CYS GLN SEQRES 84 A 1119 ARG CYS ALA GLY ASN LEU HIS SER GLU VAL LEU CYS SER SEQRES 85 A 1119 ASN LYS ASN CYS ASP ILE PHE TYR MET ARG VAL LYS VAL SEQRES 86 A 1119 LYS LYS GLU LEU GLN GLU LYS VAL GLU GLN LEU SER LYS SEQRES 87 A 1119 TRP SEQRES 1 B 494 GLY PRO GLY GLY ASP LEU HIS MET ASP ALA LEU LEU THR SEQRES 2 B 494 LYS PHE ASN GLU ASP ARG SER LEU GLN ASP GLU ASN LEU SEQRES 3 B 494 SER GLN PRO ARG THR ARG VAL ARG ILE VAL ASP ASP ASN SEQRES 4 B 494 LEU TYR ASN LYS SER ASN PRO PHE GLN LEU CYS TYR LYS SEQRES 5 B 494 LYS ARG ASP TYR GLY SER GLN TYR TYR HIS ILE TYR GLN SEQRES 6 B 494 TYR ARG LEU LYS THR PHE ARG GLU ARG VAL LEU LYS GLU SEQRES 7 B 494 CYS ASP LYS ARG TRP ASP ALA GLY PHE THR LEU ASN GLY SEQRES 8 B 494 GLN LEU VAL LEU LYS LYS ASP LYS VAL LEU ASP ILE GLN SEQRES 9 B 494 GLY ASN GLN PRO CYS TRP CYS VAL GLY SER ILE TYR CYS SEQRES 10 B 494 GLU MET LYS TYR LYS PRO ASN VAL LEU ASP GLU VAL ILE SEQRES 11 B 494 ASN ASP THR TYR GLY ALA PRO ASP LEU THR LYS SER TYR SEQRES 12 B 494 THR ASP LYS GLU GLY GLY SER ASP GLU ILE MET LEU GLU SEQRES 13 B 494 ASP GLU SER GLY ARG VAL LEU LEU VAL GLY ASP PHE ILE SEQRES 14 B 494 ARG SER THR PRO PHE ILE THR GLY VAL VAL VAL GLY ILE SEQRES 15 B 494 LEU GLY MET GLU ALA GLU ALA GLY THR PHE GLN VAL LEU SEQRES 16 B 494 ASP ILE CYS TYR PRO THR PRO LEU PRO GLN ASN PRO PHE SEQRES 17 B 494 PRO ALA PRO ILE ALA THR CYS PRO THR ARG GLY LYS ILE SEQRES 18 B 494 ALA LEU VAL SER GLY LEU ASN LEU ASN ASN THR SER PRO SEQRES 19 B 494 ASP ARG LEU LEU ARG LEU GLU ILE LEU ARG GLU PHE LEU SEQRES 20 B 494 MET GLY ARG ILE ASN ASN LYS ILE ASP ASP ILE SER LEU SEQRES 21 B 494 ILE GLY ARG LEU LEU ILE CYS GLY ASN SER VAL ASP PHE SEQRES 22 B 494 ASP ILE LYS SER VAL ASN LYS ASP GLU LEU MET ILE SER SEQRES 23 B 494 LEU THR GLU PHE SER LYS PHE LEU HIS ASN ILE LEU PRO SEQRES 24 B 494 SER ILE SER VAL ASP ILE MET PRO GLY THR ASN ASP PRO SEQRES 25 B 494 SER ASP LYS SER LEU PRO GLN GLN PRO PHE HIS LYS SER SEQRES 26 B 494 LEU PHE ASP LYS SER LEU GLU SER TYR PHE ASN GLY SER SEQRES 27 B 494 ASN LYS GLU ILE LEU ASN LEU VAL THR ASN PRO TYR GLU SEQRES 28 B 494 PHE SER TYR ASN GLY VAL ASP VAL LEU ALA VAL SER GLY SEQRES 29 B 494 LYS ASN ILE ASN ASP ILE CYS LYS TYR VAL ILE PRO SER SEQRES 30 B 494 ASN ASP ASN GLY GLU SER GLU ASN LYS VAL GLU GLU GLY SEQRES 31 B 494 GLU SER ASN ASP PHE LYS ASP ASP ILE GLU HIS ARG LEU SEQRES 32 B 494 ASP LEU MET GLU CYS THR MET LYS TRP GLN ASN ILE ALA SEQRES 33 B 494 PRO THR ALA PRO ASP THR LEU TRP CYS TYR PRO TYR THR SEQRES 34 B 494 ASP LYS ASP PRO PHE VAL LEU ASP LYS TRP PRO HIS VAL SEQRES 35 B 494 TYR ILE VAL ALA ASN GLN PRO TYR PHE GLY THR ARG VAL SEQRES 36 B 494 VAL GLU ILE GLY GLY LYS ASN ILE LYS ILE ILE SER VAL SEQRES 37 B 494 PRO GLU PHE SER SER THR GLY MET ILE ILE LEU LEU ASP SEQRES 38 B 494 LEU GLU THR LEU GLU ALA GLU THR VAL LYS ILE ASP ILE SEQRES 1 C 350 MET ASP GLN LYS ALA SER TYR PHE ILE ASN GLU LYS LEU SEQRES 2 C 350 PHE THR GLU VAL LYS PRO VAL LEU PHE THR ASP LEU ILE SEQRES 3 C 350 HIS HIS LEU LYS ILE GLY PRO SER MET ALA LYS LYS LEU SEQRES 4 C 350 MET PHE ASP TYR TYR LYS GLN THR THR ASN ALA LYS TYR SEQRES 5 C 350 ASN CYS VAL VAL ILE CYS CYS TYR LYS ASP GLN THR ILE SEQRES 6 C 350 LYS ILE ILE HIS ASP LEU SER ASN ILE PRO GLN GLN ASP SEQRES 7 C 350 SER ILE ILE ASP CYS PHE ILE TYR ALA PHE ASN PRO MET SEQRES 8 C 350 ASP SER PHE ILE PRO TYR TYR ASP ILE ILE ASP GLN LYS SEQRES 9 C 350 ASP CYS LEU THR ILE LYS ASN SER TYR GLU LEU LYS VAL SEQRES 10 C 350 SER GLU SER SER LYS ILE ILE GLU ARG THR LYS THR LEU SEQRES 11 C 350 GLU GLU LYS SER LYS PRO LEU VAL ARG PRO THR ALA ARG SEQRES 12 C 350 SER LYS THR THR PRO GLU GLU THR THR GLY ARG LYS SER SEQRES 13 C 350 LYS SER LYS ASP MET GLY LEU ARG SER THR ALA LEU LEU SEQRES 14 C 350 ALA LYS MET LYS LYS ASP ARG ASP ASP LYS GLU THR SER SEQRES 15 C 350 ARG GLN ASN GLU LEU ARG LYS ARG LYS GLU GLU ASN LEU SEQRES 16 C 350 GLN LYS ILE ASN LYS GLN ASN PRO GLU ARG GLU ALA GLN SEQRES 17 C 350 MET LYS GLU LEU ASN ASN LEU PHE VAL GLU ASP ASP LEU SEQRES 18 C 350 ASP THR GLU GLU VAL ASN GLY GLY SER LYS PRO ASN SER SEQRES 19 C 350 PRO LYS GLU THR ASP SER ASN ASP LYS ASP LYS ASN ASN SEQRES 20 C 350 ASP ASP LEU GLU ASP LEU LEU GLU THR THR ALA GLU ASP SEQRES 21 C 350 SER LEU MET ASP VAL PRO LYS ILE GLN GLN THR LYS PRO SEQRES 22 C 350 SER GLU THR GLU HIS SER LYS GLU PRO LYS SER GLU GLU SEQRES 23 C 350 GLU PRO SER SER PHE ILE ASP GLU ASP GLY TYR ILE VAL SEQRES 24 C 350 THR LYS ARG PRO ALA THR SER THR PRO PRO ARG LYS PRO SEQRES 25 C 350 SER PRO VAL VAL LYS ARG ALA LEU SER SER SER LYS LYS SEQRES 26 C 350 GLN GLU THR PRO SER SER ASN LYS ARG LEU LYS LYS GLN SEQRES 27 C 350 GLY THR LEU GLU SER PHE PHE LYS ARG LYS ALA LYS SEQRES 1 P 30 DT DA DA DT DG DG DT DA DG DG DG DG DA SEQRES 2 P 30 DG DG DA DA DA DT DT DC DC DT DC DC DC SEQRES 3 P 30 DC DT DA DC SEQRES 1 T 30 DT DA DA DT DG DG DT DA DG DG DG DG DA SEQRES 2 T 30 DG DG DA DA DA DT DT DC DC DT DC DC DC SEQRES 3 T 30 DC DT DA DC HET SF4 A1101 8 HET DCP A1102 28 HET CA A1103 1 HET CA A1104 1 HET CA A1105 1 HET CA A1106 1 HET CA T 101 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 6 SF4 FE4 S4 FORMUL 7 DCP C9 H16 N3 O13 P3 FORMUL 8 CA 5(CA 2+) FORMUL 13 HOH *44(H2 O) HELIX 1 AA1 SER A 168 ASN A 171 5 4 HELIX 2 AA2 ASP A 172 PHE A 187 1 16 HELIX 3 AA3 HIS A 222 GLY A 234 1 13 HELIX 4 AA4 ALA A 253 GLY A 263 1 11 HELIX 5 AA5 THR A 378 ASP A 394 1 17 HELIX 6 AA6 PHE A 406 LEU A 418 1 13 HELIX 7 AA7 ASP A 463 TYR A 472 1 10 HELIX 8 AA8 THR A 478 PHE A 486 1 9 HELIX 9 AA9 SER A 497 ASN A 504 1 8 HELIX 10 AB1 ASP A 506 MET A 532 1 27 HELIX 11 AB2 MET A 532 THR A 544 1 13 HELIX 12 AB3 PRO A 547 LEU A 552 1 6 HELIX 13 AB4 GLN A 556 ASP A 572 1 17 HELIX 14 AB5 SER A 611 HIS A 620 1 10 HELIX 15 AB6 CYS A 623 THR A 625 5 3 HELIX 16 AB7 ASN A 629 ASN A 637 1 9 HELIX 17 AB8 GLY A 661 ARG A 682 1 22 HELIX 18 AB9 PHE A 688 VAL A 692 5 5 HELIX 19 AC1 LEU A 693 LEU A 698 1 6 HELIX 20 AC2 ALA A 704 ALA A 713 1 10 HELIX 21 AC3 MET A 734 TYR A 746 1 13 HELIX 22 AC4 ASP A 774 THR A 791 1 18 HELIX 23 AC5 CYS A 843 ILE A 859 1 17 HELIX 24 AC6 ASN A 862 HIS A 879 1 18 HELIX 25 AC7 ASP A 883 LEU A 887 5 5 HELIX 26 AC8 GLN A 901 GLY A 915 1 15 HELIX 27 AC9 ASP A 941 ASN A 949 1 9 HELIX 28 AD1 ASP A 953 GLN A 961 1 9 HELIX 29 AD2 LEU A 962 GLY A 975 1 14 HELIX 30 AD3 GLY A 975 VAL A 984 1 10 HELIX 31 AD4 SER A 1031 LYS A 1037 1 7 HELIX 32 AD5 ASP A 1041 GLY A 1061 1 21 HELIX 33 AD6 MET A 1079 SER A 1095 1 17 HELIX 34 AD7 THR B 6 SER B 13 1 8 HELIX 35 AD8 TYR B 54 ASP B 73 1 20 HELIX 36 AD9 ASN B 117 ASN B 124 1 8 HELIX 37 AE1 ASP B 160 SER B 164 5 5 HELIX 38 AE2 ASP B 228 MET B 241 1 14 HELIX 39 AE3 ASP B 274 LEU B 291 1 18 HELIX 40 AE4 HIS B 316 PHE B 320 5 5 HELIX 41 AE5 ASP B 321 TYR B 327 5 7 HELIX 42 AE6 GLY B 357 ILE B 368 1 12 HELIX 43 AE7 GLU B 393 TRP B 405 1 13 HELIX 44 AE8 THR B 411 LEU B 416 1 6 HELIX 45 AE9 LEU C 21 LYS C 30 1 10 HELIX 46 AF1 GLY C 32 GLN C 46 1 15 SHEET 1 AA1 5 GLU A 121 VAL A 124 0 SHEET 2 AA1 5 THR A 135 THR A 143 -1 O VAL A 136 N SER A 123 SHEET 3 AA1 5 SER A 148 THR A 154 -1 O CYS A 151 N PHE A 139 SHEET 4 AA1 5 VAL A 293 ASN A 296 1 O ILE A 295 N ASN A 152 SHEET 5 AA1 5 SER A 278 MET A 279 -1 N SER A 278 O SER A 294 SHEET 1 AA2 5 GLU A 121 VAL A 124 0 SHEET 2 AA2 5 THR A 135 THR A 143 -1 O VAL A 136 N SER A 123 SHEET 3 AA2 5 SER A 114 GLN A 117 -1 N GLN A 116 O VAL A 142 SHEET 4 AA2 5 TRP A 269 THR A 271 -1 O ILE A 270 N PHE A 115 SHEET 5 AA2 5 ILE A 301 ALA A 302 -1 O ILE A 301 N THR A 271 SHEET 1 AA3 4 TYR A 159 PRO A 163 0 SHEET 2 AA3 4 LEU A 211 VAL A 218 -1 O TRP A 214 N VAL A 162 SHEET 3 AA3 4 ILE A 191 SER A 201 -1 N VAL A 197 O PHE A 213 SHEET 4 AA3 4 THR A 573 VAL A 574 1 O VAL A 574 N GLN A 200 SHEET 1 AA4 4 SER A 347 ILE A 348 0 SHEET 2 AA4 4 ARG A 316 CYS A 324 -1 N ILE A 317 O SER A 347 SHEET 3 AA4 4 VAL A 339 ASN A 344 -1 O ILE A 340 N GLU A 323 SHEET 4 AA4 4 ASN A 358 THR A 361 -1 O PHE A 360 N ILE A 342 SHEET 1 AA5 3 SER A 347 ILE A 348 0 SHEET 2 AA5 3 ARG A 316 CYS A 324 -1 N ILE A 317 O SER A 347 SHEET 3 AA5 3 VAL A 397 ILE A 399 1 O VAL A 397 N MET A 318 SHEET 1 AA6 2 ILE A 436 PHE A 441 0 SHEET 2 AA6 2 ARG A 449 VAL A 454 -1 O THR A 451 N SER A 439 SHEET 1 AA7 4 GLY A 598 TYR A 600 0 SHEET 2 AA7 4 TYR A 808 ASN A 812 -1 O TYR A 808 N TYR A 600 SHEET 3 AA7 4 ARG A 815 ASN A 823 -1 O ALA A 817 N LEU A 809 SHEET 4 AA7 4 LYS A 826 LYS A 833 -1 O ASP A 828 N PHE A 820 SHEET 1 AA8 2 ILE A 604 PHE A 609 0 SHEET 2 AA8 2 LEU A 799 TYR A 805 -1 O TYR A 805 N ILE A 604 SHEET 1 AA9 3 LEU A 627 CYS A 628 0 SHEET 2 AA9 3 TYR A 652 VAL A 654 -1 O TYR A 652 N CYS A 628 SHEET 3 AA9 3 TYR A 644 ILE A 646 -1 N VAL A 645 O PHE A 653 SHEET 1 AB1 2 VAL A 757 VAL A 758 0 SHEET 2 AB1 2 VAL A 768 LYS A 769 -1 O LYS A 769 N VAL A 757 SHEET 1 AB2 2 ILE A 889 THR A 892 0 SHEET 2 AB2 2 ARG A 923 TYR A 926 -1 O TYR A 926 N ILE A 889 SHEET 1 AB3 6 CYS B 102 GLU B 111 0 SHEET 2 AB3 6 GLU B 145 ASP B 150 -1 O MET B 147 N TYR B 109 SHEET 3 AB3 6 GLY B 153 VAL B 158 -1 O GLY B 153 N ASP B 150 SHEET 4 AB3 6 THR B 184 CYS B 191 1 O PHE B 185 N VAL B 158 SHEET 5 AB3 6 VAL B 172 GLY B 177 -1 N LEU B 176 O LEU B 188 SHEET 6 AB3 6 CYS B 102 GLU B 111 -1 N CYS B 104 O ILE B 175 SHEET 1 AB4 5 SER B 295 ILE B 298 0 SHEET 2 AB4 5 ARG B 256 ILE B 259 1 N LEU B 257 O SER B 295 SHEET 3 AB4 5 LYS B 213 VAL B 217 1 N ALA B 215 O ARG B 256 SHEET 4 AB4 5 MET B 469 ASP B 474 -1 O ILE B 471 N LEU B 216 SHEET 5 AB4 5 GLU B 481 LYS B 484 -1 O GLU B 481 N LEU B 472 SHEET 1 AB5 5 TYR B 343 TYR B 347 0 SHEET 2 AB5 5 VAL B 350 VAL B 355 -1 O ALA B 354 N TYR B 343 SHEET 3 AB5 5 VAL B 435 GLN B 441 1 O VAL B 435 N LEU B 353 SHEET 4 AB5 5 ILE B 458 PRO B 462 1 O ILE B 459 N VAL B 438 SHEET 5 AB5 5 GLY B 445 ARG B 447 -1 N ARG B 447 O ILE B 458 SHEET 1 AB6 2 GLU B 450 ILE B 451 0 SHEET 2 AB6 2 LYS B 454 ASN B 455 -1 O LYS B 454 N ILE B 451 SHEET 1 AB7 2 CYS C 54 VAL C 56 0 SHEET 2 AB7 2 ILE C 85 PHE C 88 -1 O TYR C 86 N VAL C 55 SHEET 1 AB8 3 ILE C 65 LYS C 66 0 SHEET 2 AB8 3 CYS C 58 TYR C 60 -1 N CYS C 58 O LYS C 66 SHEET 3 AB8 3 ILE C 80 ASP C 82 -1 O ASP C 82 N CYS C 59 LINK OD1 ASP A 321 CA CA A1106 1555 1555 2.61 LINK OD2 ASP A 321 CA CA A1106 1555 1555 1.94 LINK OD2 ASP A 608 CA CA A1103 1555 1555 2.56 LINK OD1 ASP A 608 CA CA A1105 1555 1555 3.08 LINK O PHE A 609 CA CA A1103 1555 1555 2.38 LINK OD2 ASP A 764 CA CA A1103 1555 1555 2.37 LINK OE1 GLU A 800 CA CA A1105 1555 1555 2.31 LINK SG CYS A1056 FE3 SF4 A1101 1555 1555 2.44 LINK SG CYS A1059 FE4 SF4 A1101 1555 1555 2.38 LINK SG CYS A1069 FE1 SF4 A1101 1555 1555 2.17 LINK SG CYS A1074 FE2 SF4 A1101 1555 1555 2.34 LINK O1A DCP A1102 CA CA A1103 1555 1555 3.06 LINK O1B DCP A1102 CA CA A1103 1555 1555 2.30 LINK O1G DCP A1102 CA CA A1103 1555 1555 2.81 LINK CA CA A1104 O HOH A1225 1555 1555 2.93 LINK OP2 DG T 10 CA CA T 101 1555 1555 3.20 LINK CA CA T 101 O HOH T 201 1555 1555 3.16 CISPEP 1 HIS A 795 PRO A 796 0 4.14 SITE 1 AC1 7 CYS A1056 CYS A1059 CYS A1069 ASN A1071 SITE 2 AC1 7 CYS A1074 ARG A1080 LEU B 119 SITE 1 AC2 13 PHE A 609 ASN A 610 SER A 611 LEU A 612 SITE 2 AC2 13 TYR A 613 ARG A 674 LYS A 701 ASP A 764 SITE 3 AC2 13 CA A1103 CA A1104 DC P 30 DG T 5 SITE 4 AC2 13 DG T 6 SITE 1 AC3 4 ASP A 608 PHE A 609 ASP A 764 DCP A1102 SITE 1 AC4 3 ASP A 764 DCP A1102 HOH A1225 SITE 1 AC5 3 ASP A 608 ASN A 610 GLU A 800 SITE 1 AC6 2 ASP A 321 ILE A 322 SITE 1 AC7 1 DG T 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000