HEADER OXIDOREDUCTASE 22-MAY-19 6P35 TITLE 2.5 ANGSTROM STRUCTURE OF WILD TYPE GLYOXYLATE/HYDROXYPYRUVATE TITLE 2 REDUCTASE A FROM ESCHERICHIA COLI IN COMPLEX WITH 2-KETO ARGININE AND TITLE 3 NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-KETOACID REDUCTASE; COMPND 5 EC: 1.1.1.79,1.1.1.81; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN B / BL21-DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: B / BL21-DE3; SOURCE 5 GENE: GHRA, ECBD_2566; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.VUKSANOVIC,N.R.SILVAGGI REVDAT 3 11-OCT-23 6P35 1 REMARK REVDAT 2 17-JUN-20 6P35 1 AUTHOR REVDAT 1 27-MAY-20 6P35 0 JRNL AUTH N.VUKSANOVIC JRNL TITL 2.1 ANGSTROM STRUCTURE OF WILD TYPE JRNL TITL 2 GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A FROM ESCHERICHIA COLI JRNL TITL 3 IN COMPLEX WITH GLYOXYLATE AND NADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11_2567) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.760 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9068 - 6.0097 1.00 1864 157 0.1796 0.1978 REMARK 3 2 6.0097 - 4.7717 1.00 1755 148 0.1411 0.1680 REMARK 3 3 4.7717 - 4.1690 1.00 1720 145 0.1174 0.1519 REMARK 3 4 4.1690 - 3.7880 1.00 1712 143 0.1317 0.1609 REMARK 3 5 3.7880 - 3.5166 1.00 1685 142 0.1526 0.1806 REMARK 3 6 3.5166 - 3.3093 1.00 1696 142 0.1705 0.2209 REMARK 3 7 3.3093 - 3.1436 1.00 1695 143 0.2117 0.2399 REMARK 3 8 3.1436 - 3.0068 1.00 1668 141 0.2025 0.2515 REMARK 3 9 3.0068 - 2.8911 1.00 1672 140 0.2113 0.2589 REMARK 3 10 2.8911 - 2.7913 1.00 1675 141 0.2084 0.2822 REMARK 3 11 2.7913 - 2.7041 1.00 1670 141 0.2144 0.2496 REMARK 3 12 2.7041 - 2.6268 1.00 1667 140 0.2232 0.2772 REMARK 3 13 2.6268 - 2.5576 1.00 1660 139 0.2191 0.2616 REMARK 3 14 2.5576 - 2.4952 0.98 1637 138 0.2199 0.2476 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2659 REMARK 3 ANGLE : 1.209 3624 REMARK 3 CHIRALITY : 0.054 384 REMARK 3 PLANARITY : 0.008 464 REMARK 3 DIHEDRAL : 19.413 1575 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8517 64.0902 -39.9641 REMARK 3 T TENSOR REMARK 3 T11: 0.2371 T22: 0.3817 REMARK 3 T33: 0.2855 T12: -0.0242 REMARK 3 T13: -0.0010 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.6580 L22: 1.2446 REMARK 3 L33: 1.5769 L12: -0.2268 REMARK 3 L13: -0.1303 L23: 0.4207 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: 0.2210 S13: -0.1073 REMARK 3 S21: -0.0538 S22: -0.0158 S23: 0.0412 REMARK 3 S31: -0.0211 S32: -0.1985 S33: -0.0884 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1436 62.9196 -8.0298 REMARK 3 T TENSOR REMARK 3 T11: 0.2539 T22: 0.2773 REMARK 3 T33: 0.2607 T12: -0.0618 REMARK 3 T13: -0.0143 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.2364 L22: 0.8181 REMARK 3 L33: 0.8259 L12: -0.4337 REMARK 3 L13: -0.5342 L23: 0.0546 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.0977 S13: -0.0928 REMARK 3 S21: 0.0793 S22: -0.0006 S23: 0.0256 REMARK 3 S31: 0.1395 S32: -0.0187 S33: -0.0153 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7241 69.3494 -31.1586 REMARK 3 T TENSOR REMARK 3 T11: 0.3009 T22: 0.3497 REMARK 3 T33: 0.3407 T12: 0.0043 REMARK 3 T13: -0.0002 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.9019 L22: 0.9852 REMARK 3 L33: 1.0948 L12: 0.9064 REMARK 3 L13: -0.9752 L23: -0.9385 REMARK 3 S TENSOR REMARK 3 S11: 0.1195 S12: -0.1424 S13: 0.0783 REMARK 3 S21: 0.1348 S22: -0.0534 S23: -0.0403 REMARK 3 S31: -0.1383 S32: 0.2564 S33: -0.0419 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.495 REMARK 200 RESOLUTION RANGE LOW (A) : 45.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350, 0.2 M LI2SO4, 0.1 M BIS REMARK 280 -TRIS PH 5.5, 1.8 MM NADP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.52333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.76167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.14250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.38083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.90417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.52333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.76167 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 16.38083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 49.14250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 81.90417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -79.28900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 137.33258 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -16.38083 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -49.14250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 118 O HOH A 508 1.55 REMARK 500 O HOH A 588 O HOH A 618 1.86 REMARK 500 O HOH A 617 O HOH A 624 1.87 REMARK 500 O GLY A 243 O HOH A 501 1.91 REMARK 500 OE1 GLU A 91 O HOH A 502 2.12 REMARK 500 O HOH A 543 O HOH A 580 2.16 REMARK 500 OE1 GLN A 25 O HOH A 503 2.19 REMARK 500 O HOH A 589 O HOH A 613 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 68 CB - CG - OD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 68 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 82.85 -69.84 REMARK 500 ASP A 92 -91.29 61.73 REMARK 500 ALA A 226 -93.50 -102.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NWG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NWG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 DBREF1 6P35 A 1 312 UNP A0A140NAE3_ECOBD DBREF2 6P35 A A0A140NAE3 1 312 SEQRES 1 A 312 MET ASP ILE ILE PHE TYR HIS PRO THR PHE ASP THR GLN SEQRES 2 A 312 TRP TRP ILE GLU ALA LEU ARG LYS ALA ILE PRO GLN ALA SEQRES 3 A 312 ARG VAL ARG ALA TRP LYS SER GLY ASP ASN ASP SER ALA SEQRES 4 A 312 ASP TYR ALA LEU VAL TRP HIS PRO PRO VAL GLU MET LEU SEQRES 5 A 312 ALA GLY ARG ASP LEU LYS ALA VAL PHE ALA LEU GLY ALA SEQRES 6 A 312 GLY VAL ASP SER ILE LEU SER LYS LEU GLN ALA HIS PRO SEQRES 7 A 312 GLU MET LEU ASN PRO SER VAL PRO LEU PHE ARG LEU GLU SEQRES 8 A 312 ASP THR GLY MET GLY GLU GLN MET GLN GLU TYR ALA VAL SEQRES 9 A 312 SER GLN VAL LEU HIS TRP PHE ARG ARG PHE ASP ASP TYR SEQRES 10 A 312 ARG ILE GLN GLN ASN SER SER HIS TRP GLN PRO LEU PRO SEQRES 11 A 312 GLU TYR HIS ARG GLU ASP PHE THR ILE GLY ILE LEU GLY SEQRES 12 A 312 ALA GLY VAL LEU GLY SER LYS VAL ALA GLN SER LEU GLN SEQRES 13 A 312 THR TRP ARG PHE PRO LEU ARG CYS TRP SER ARG THR ARG SEQRES 14 A 312 LYS SER TRP PRO GLY VAL GLN SER PHE ALA GLY ARG GLU SEQRES 15 A 312 GLU LEU SER ALA PHE LEU SER GLN CYS ARG VAL LEU ILE SEQRES 16 A 312 ASN LEU LEU PRO ASN THR PRO GLU THR VAL GLY ILE ILE SEQRES 17 A 312 ASN GLN GLN LEU LEU GLU LYS LEU PRO ASP GLY ALA TYR SEQRES 18 A 312 LEU LEU ASN LEU ALA ARG GLY VAL HIS VAL VAL GLU ASP SEQRES 19 A 312 ASP LEU LEU ALA ALA LEU ASP SER GLY LYS VAL LYS GLY SEQRES 20 A 312 ALA MET LEU ASP VAL PHE ASN ARG GLU PRO LEU PRO PRO SEQRES 21 A 312 GLU SER PRO LEU TRP GLN HIS PRO ARG VAL THR ILE THR SEQRES 22 A 312 PRO HIS VAL ALA ALA ILE THR ARG PRO ALA GLU ALA VAL SEQRES 23 A 312 GLU TYR ILE SER ARG THR ILE ALA GLN LEU GLU LYS GLY SEQRES 24 A 312 GLU LYS VAL CYS GLY GLN VAL ASP ARG ALA ARG GLY TYR HET NWG A 401 12 HET GOL A 402 14 HET GOL A 403 14 HET NWG A 404 12 HET NAP A 405 73 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HETNAM NWG 5-[(DIAMINOMETHYLIDENE)AMINO]-2-OXOPENTANOIC ACID HETNAM GOL GLYCEROL HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NWG 2(C6 H11 N3 O3) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 6 NAP C21 H28 N7 O17 P3 FORMUL 7 SO4 3(O4 S 2-) FORMUL 10 HOH *124(H2 O) HELIX 1 AA1 ASP A 11 ILE A 23 1 13 HELIX 2 AA2 PRO A 48 ALA A 53 1 6 HELIX 3 AA3 VAL A 67 HIS A 77 1 11 HELIX 4 AA4 GLY A 94 ARG A 112 1 19 HELIX 5 AA5 ARG A 113 SER A 123 1 11 HELIX 6 AA6 HIS A 133 PHE A 137 5 5 HELIX 7 AA7 GLY A 145 THR A 157 1 13 HELIX 8 AA8 GLY A 180 GLN A 190 1 11 HELIX 9 AA9 ASN A 209 LEU A 216 1 8 HELIX 10 AB1 ARG A 227 VAL A 231 5 5 HELIX 11 AB2 VAL A 232 SER A 242 1 11 HELIX 12 AB3 ARG A 281 LYS A 298 1 18 SHEET 1 AA1 5 ARG A 27 ALA A 30 0 SHEET 2 AA1 5 ASP A 2 TYR A 6 1 N ILE A 3 O ARG A 27 SHEET 3 AA1 5 TYR A 41 VAL A 44 1 O LEU A 43 N ILE A 4 SHEET 4 AA1 5 ALA A 59 ALA A 62 1 O PHE A 61 N ALA A 42 SHEET 5 AA1 5 LEU A 87 PHE A 88 1 O PHE A 88 N ALA A 62 SHEET 1 AA2 7 VAL A 175 ALA A 179 0 SHEET 2 AA2 7 LEU A 162 SER A 166 1 N CYS A 164 O PHE A 178 SHEET 3 AA2 7 ILE A 139 LEU A 142 1 N ILE A 141 O TRP A 165 SHEET 4 AA2 7 VAL A 193 ASN A 196 1 O VAL A 193 N GLY A 140 SHEET 5 AA2 7 ALA A 220 ASN A 224 1 O LEU A 223 N LEU A 194 SHEET 6 AA2 7 VAL A 245 LEU A 250 1 O MET A 249 N LEU A 222 SHEET 7 AA2 7 VAL A 270 ILE A 272 1 O THR A 271 N LEU A 250 SSBOND 1 CYS A 303 CYS A 303 1555 11554 2.04 CISPEP 1 GLU A 256 PRO A 257 0 -7.88 SITE 1 AC1 7 HIS A 46 GLY A 64 ALA A 65 GLY A 66 SITE 2 AC1 7 ARG A 227 HIS A 275 NAP A 405 SITE 1 AC2 3 GLN A 176 SER A 177 PHE A 178 SITE 1 AC3 2 ASP A 11 NWG A 404 SITE 1 AC4 8 PHE A 10 ASP A 11 TRP A 15 GLU A 131 SITE 2 AC4 8 THR A 280 PRO A 282 GOL A 403 HOH A 541 SITE 1 AC5 34 ALA A 65 ARG A 89 MET A 99 GLY A 143 SITE 2 AC5 34 ALA A 144 GLY A 145 VAL A 146 LEU A 147 SITE 3 AC5 34 TRP A 165 SER A 166 ARG A 167 THR A 168 SITE 4 AC5 34 LYS A 170 LEU A 197 LEU A 198 PRO A 199 SITE 5 AC5 34 LEU A 225 ALA A 226 ARG A 227 ASP A 251 SITE 6 AC5 34 HIS A 275 ALA A 277 ALA A 278 TYR A 312 SITE 7 AC5 34 NWG A 401 HOH A 504 HOH A 524 HOH A 529 SITE 8 AC5 34 HOH A 539 HOH A 543 HOH A 580 HOH A 583 SITE 9 AC5 34 HOH A 600 HOH A 607 SITE 1 AC6 6 HIS A 133 ARG A 134 ARG A 159 ARG A 281 SITE 2 AC6 6 HOH A 511 HOH A 520 SITE 1 AC7 3 PRO A 48 VAL A 49 LYS A 73 SITE 1 AC8 3 ARG A 113 PRO A 130 HOH A 574 CRYST1 158.578 158.578 98.285 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006306 0.003641 0.000000 0.00000 SCALE2 0.000000 0.007282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010174 0.00000