HEADER ISOMERASE 23-MAY-19 6P3J TITLE CRYSTAL STRUCTURE OF LIGU COMPND MOL_ID: 1; COMPND 2 MOLECULE: (4E)-OXALOMESACONATE DELTA-ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OMA ISOMERASE,1,3-ALLYLIC ISOMERASE LIGU; COMPND 5 EC: 5.3.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM SP. (STRAIN KA1); SOURCE 3 ORGANISM_TAXID: 164608; SOURCE 4 STRAIN: KA1; SOURCE 5 GENE: LIGU, ORF100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LIGNIN DEGRADATION, PROTOCATECHUATE 4, 5-CLEAVAGE PATHWAY, PRPF KEYWDS 2 SUPERFAMILY, (4E)-OXALOMESACONATE ISOMERASE MECHANISM, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.CORY,T.N.HOGANCAMP,F.M.RAUSHEL,D.P.BARONDEAU REVDAT 4 11-OCT-23 6P3J 1 LINK REVDAT 3 28-AUG-19 6P3J 1 JRNL REVDAT 2 07-AUG-19 6P3J 1 JRNL REVDAT 1 31-JUL-19 6P3J 0 JRNL AUTH T.N.HOGANCAMP,S.A.CORY,D.P.BARONDEAU,F.M.RAUSHEL JRNL TITL STRUCTURE AND CHEMICAL REACTION MECHANISM OF LIGU, AN ENZYME JRNL TITL 2 THAT CATALYZES AN ALLYLIC ISOMERIZATION IN THE BACTERIAL JRNL TITL 3 DEGRADATION OF LIGNIN. JRNL REF BIOCHEMISTRY V. 58 3494 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31339729 JRNL DOI 10.1021/ACS.BIOCHEM.9B00549 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 44713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.480 REMARK 3 FREE R VALUE TEST SET COUNT : 2003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9953 - 4.8662 0.99 3299 152 0.1802 0.1714 REMARK 3 2 4.8662 - 3.8633 0.99 3150 150 0.1502 0.1803 REMARK 3 3 3.8633 - 3.3752 0.99 3117 139 0.1760 0.1851 REMARK 3 4 3.3752 - 3.0667 0.98 3065 151 0.1975 0.2282 REMARK 3 5 3.0667 - 2.8469 0.99 3091 145 0.2080 0.2605 REMARK 3 6 2.8469 - 2.6791 1.00 3094 146 0.2022 0.2366 REMARK 3 7 2.6791 - 2.5450 1.00 3076 152 0.1933 0.2613 REMARK 3 8 2.5450 - 2.4342 1.00 3067 136 0.2010 0.2455 REMARK 3 9 2.4342 - 2.3405 0.97 3006 149 0.2019 0.2411 REMARK 3 10 2.3405 - 2.2597 0.99 3024 133 0.2081 0.2144 REMARK 3 11 2.2597 - 2.1891 0.99 3042 148 0.2145 0.3324 REMARK 3 12 2.1891 - 2.1265 0.99 3029 150 0.2247 0.2785 REMARK 3 13 2.1265 - 2.0705 0.95 2943 131 0.2544 0.2939 REMARK 3 14 2.0705 - 2.0200 0.88 2707 121 0.3007 0.3112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5232 REMARK 3 ANGLE : 0.596 7130 REMARK 3 CHIRALITY : 0.045 847 REMARK 3 PLANARITY : 0.004 951 REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN B AND RESID 284:361) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1010 -11.7494 27.9920 REMARK 3 T TENSOR REMARK 3 T11: 0.2976 T22: 0.5161 REMARK 3 T33: 0.4828 T12: -0.0603 REMARK 3 T13: -0.0992 T23: 0.0678 REMARK 3 L TENSOR REMARK 3 L11: 3.6136 L22: 2.9186 REMARK 3 L33: 2.0366 L12: 0.4542 REMARK 3 L13: -0.2716 L23: -0.7684 REMARK 3 S TENSOR REMARK 3 S11: 0.2276 S12: -0.9081 S13: -0.9796 REMARK 3 S21: 0.1639 S22: -0.2955 S23: 0.0845 REMARK 3 S31: 0.2352 S32: 0.0219 S33: 0.0353 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 8:148) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4013 -0.7767 -4.4016 REMARK 3 T TENSOR REMARK 3 T11: 0.3812 T22: 0.4538 REMARK 3 T33: 0.4331 T12: -0.0622 REMARK 3 T13: 0.1600 T23: -0.1516 REMARK 3 L TENSOR REMARK 3 L11: 1.5439 L22: 1.4454 REMARK 3 L33: 2.6003 L12: -0.2365 REMARK 3 L13: 0.4887 L23: -0.3414 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: 0.3464 S13: -0.2032 REMARK 3 S21: -0.4476 S22: 0.2292 S23: -0.4394 REMARK 3 S31: -0.2015 S32: 0.3651 S33: -0.0244 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 149:360) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0813 3.4155 -17.3432 REMARK 3 T TENSOR REMARK 3 T11: 0.5819 T22: 0.4352 REMARK 3 T33: 0.3613 T12: -0.1287 REMARK 3 T13: 0.2171 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 2.3466 L22: 1.3176 REMARK 3 L33: 2.1294 L12: 0.3749 REMARK 3 L13: 1.5346 L23: 0.5277 REMARK 3 S TENSOR REMARK 3 S11: -0.3495 S12: 0.4257 S13: -0.4242 REMARK 3 S21: -0.4951 S22: 0.3360 S23: -0.0415 REMARK 3 S31: -0.4273 S32: 0.2211 S33: 0.0756 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 2:170) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2079 0.2800 21.9874 REMARK 3 T TENSOR REMARK 3 T11: 0.2825 T22: 0.3534 REMARK 3 T33: 0.3330 T12: 0.0447 REMARK 3 T13: -0.0183 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.8390 L22: 1.7786 REMARK 3 L33: 2.7817 L12: -0.0672 REMARK 3 L13: 0.9323 L23: -0.3833 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.2455 S13: -0.3261 REMARK 3 S21: 0.2042 S22: 0.1569 S23: -0.2578 REMARK 3 S31: -0.2089 S32: -0.1152 S33: -0.1582 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 171:283) REMARK 3 ORIGIN FOR THE GROUP (A): -42.5951 -6.9764 29.4928 REMARK 3 T TENSOR REMARK 3 T11: 0.5998 T22: 0.9004 REMARK 3 T33: 1.2041 T12: 0.0646 REMARK 3 T13: -0.0942 T23: -0.2157 REMARK 3 L TENSOR REMARK 3 L11: 9.4059 L22: 4.5871 REMARK 3 L33: 2.8549 L12: -0.4076 REMARK 3 L13: 1.0587 L23: -0.4622 REMARK 3 S TENSOR REMARK 3 S11: 0.2112 S12: -0.9815 S13: 0.6249 REMARK 3 S21: -0.2920 S22: -0.1466 S23: 1.4049 REMARK 3 S31: -0.1407 S32: -0.2885 S33: -0.0508 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1271 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.3.10 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.3.10 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6P3K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL SOLUTION - 200 MM CALCIUM REMARK 280 CHLORIDE DIHYDRATE, 100 MM HEPES/KOH, PH 6.5, 35% REMARK 280 PENTAERYTHRITOL ETHOXYLATE (15/4 EO/OH) DROP - 2 UL ENZYME, 2 UL REMARK 280 WELL SOLUTION WHERE ENZYME WAS AT 22.3 MG/ML IN 20 MM HEPES/KOH, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.38800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.53600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.68200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.53600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.38800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.68200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 5 REMARK 465 ARG A 6 REMARK 465 ASN A 7 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 MET B 1 REMARK 465 LEU B 297 REMARK 465 ILE B 298 REMARK 465 PRO B 299 REMARK 465 GLY B 300 REMARK 465 ASP B 333 REMARK 465 ASP B 334 REMARK 465 ALA B 335 REMARK 465 GLY B 336 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 465 HIS B 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 115.09 -179.40 REMARK 500 GLN A 98 154.21 66.16 REMARK 500 GLN A 98 152.75 66.16 REMARK 500 SER A 120 68.64 -109.97 REMARK 500 SER A 120 68.47 -109.98 REMARK 500 THR A 283 -119.48 -126.59 REMARK 500 ASP B 50 114.25 -173.71 REMARK 500 ASP B 55 40.84 -100.99 REMARK 500 SER B 120 66.92 -103.79 REMARK 500 ALA B 187 -70.73 -64.24 REMARK 500 ASN B 227 91.63 -70.00 REMARK 500 THR B 283 -115.20 -102.57 REMARK 500 GLU B 311 -60.48 -95.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 266 OD1 REMARK 620 2 ASP A 266 OD2 51.5 REMARK 620 3 MET B 8 O 84.3 63.3 REMARK 620 4 ASP B 9 OD1 85.3 67.4 4.6 REMARK 620 5 GLU B 359 OE2 80.7 63.7 5.0 4.7 REMARK 620 6 HOH B 543 O 79.0 62.0 5.9 6.5 1.9 REMARK 620 7 HOH B 545 O 81.3 60.7 3.1 6.7 4.3 4.2 REMARK 620 8 HOH B 572 O 82.3 66.6 6.2 3.3 2.9 4.6 6.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 507 O REMARK 620 2 HOH A 584 O 82.0 REMARK 620 3 ARG B 3 O 73.1 154.7 REMARK 620 4 HOH B 586 O 79.9 94.7 76.8 REMARK 620 5 HOH B 597 O 93.9 83.4 102.5 173.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 513 O REMARK 620 2 HOH A 516 O 72.2 REMARK 620 3 HOH A 543 O 72.6 98.1 REMARK 620 4 ARG B 6 O 141.7 92.7 145.5 REMARK 620 5 GLU B 359 OE1 86.2 155.0 86.8 97.1 REMARK 620 6 GLU B 359 OE2 133.5 151.1 81.5 73.6 53.8 REMARK 620 7 HOH B 527 O 70.8 77.4 142.6 71.7 83.8 119.9 REMARK 620 8 HOH B 543 O 134.3 83.6 73.3 75.5 121.2 68.5 140.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 407 DBREF 6P3J A 1 357 UNP Q0KJL4 LIGU_NOVK1 1 357 DBREF 6P3J B 1 357 UNP Q0KJL4 LIGU_NOVK1 1 357 SEQADV 6P3J LEU A 358 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J GLU A 359 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS A 360 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS A 361 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS A 362 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS A 363 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS A 364 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS A 365 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J LEU B 358 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J GLU B 359 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS B 360 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS B 361 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS B 362 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS B 363 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS B 364 UNP Q0KJL4 EXPRESSION TAG SEQADV 6P3J HIS B 365 UNP Q0KJL4 EXPRESSION TAG SEQRES 1 A 365 MET PRO ARG ARG ASP ARG ASN MET ASP SER ALA PRO CYS SEQRES 2 A 365 MET TRP MET ARG GLY GLY THR SER LYS GLY GLY TYR PHE SEQRES 3 A 365 LEU ARG ALA ASP LEU PRO ALA ASP THR ALA ALA ARG ASP SEQRES 4 A 365 ALA PHE LEU LEU ALA VAL MET GLY SER PRO ASP PRO ARG SEQRES 5 A 365 GLN ILE ASP GLY MET GLY GLY ALA ASP PRO LEU THR SER SEQRES 6 A 365 LYS VAL ALA VAL VAL SER LYS SER GLU ARG PRO GLY ILE SEQRES 7 A 365 ASP VAL ASP TYR LEU PHE LEU GLN VAL PHE VAL ASP GLN SEQRES 8 A 365 ALA ILE VAL THR ASP ALA GLN ASN CYS GLY ASN ILE LEU SEQRES 9 A 365 ALA GLY VAL GLY PRO PHE ALA ILE GLU ARG GLY LEU VAL SEQRES 10 A 365 ALA ALA SER GLY ASP GLU THR ARG VAL ALA ILE PHE MET SEQRES 11 A 365 GLU ASN THR GLY GLN VAL ALA VAL ALA THR VAL ARG THR SEQRES 12 A 365 PRO GLY GLY SER VAL THR TYR ALA GLY ASP ALA ALA ILE SEQRES 13 A 365 ASP GLY VAL PRO GLY THR HIS ALA PRO ILE PRO THR GLU SEQRES 14 A 365 PHE ARG ASP THR ALA GLY SER SER CYS GLY ALA LEU LEU SEQRES 15 A 365 PRO SER GLY ASN ALA VAL ASP VAL VAL ASN GLY LEU PRO SEQRES 16 A 365 VAL THR LEU ILE ASP ASN GLY MET PRO CYS VAL VAL MET SEQRES 17 A 365 LYS ALA ALA ASP VAL GLY ILE THR GLY TYR GLU ASP ARG SEQRES 18 A 365 ASP SER LEU ASP ALA ASN ALA GLU LEU LYS ALA LYS ILE SEQRES 19 A 365 GLU ALA ILE ARG LEU ALA VAL GLY GLU LEU MET ASN LEU SEQRES 20 A 365 GLY ASP VAL THR GLU LYS SER VAL PRO LYS MET MET LEU SEQRES 21 A 365 VAL ALA PRO PRO ARG ASP GLY GLY ALA VAL CYS VAL ARG SEQRES 22 A 365 SER PHE ILE PRO HIS ARG ALA HIS ALA THR ILE GLY VAL SEQRES 23 A 365 LEU GLY ALA VAL SER VAL ALA THR ALA CYS LEU ILE PRO SEQRES 24 A 365 GLY SER PRO ALA ALA GLU VAL ALA VAL VAL PRO GLU GLY SEQRES 25 A 365 ALA ARG LYS THR LEU SER ILE GLU HIS PRO THR GLY GLU SEQRES 26 A 365 MET SER CYS VAL LEU GLU VAL ASP ASP ALA GLY ASN VAL SEQRES 27 A 365 VAL SER ALA ALA LEU LEU ARG THR ALA ARG LYS LEU MET SEQRES 28 A 365 ASP GLY VAL VAL PHE VAL LEU GLU HIS HIS HIS HIS HIS SEQRES 29 A 365 HIS SEQRES 1 B 365 MET PRO ARG ARG ASP ARG ASN MET ASP SER ALA PRO CYS SEQRES 2 B 365 MET TRP MET ARG GLY GLY THR SER LYS GLY GLY TYR PHE SEQRES 3 B 365 LEU ARG ALA ASP LEU PRO ALA ASP THR ALA ALA ARG ASP SEQRES 4 B 365 ALA PHE LEU LEU ALA VAL MET GLY SER PRO ASP PRO ARG SEQRES 5 B 365 GLN ILE ASP GLY MET GLY GLY ALA ASP PRO LEU THR SER SEQRES 6 B 365 LYS VAL ALA VAL VAL SER LYS SER GLU ARG PRO GLY ILE SEQRES 7 B 365 ASP VAL ASP TYR LEU PHE LEU GLN VAL PHE VAL ASP GLN SEQRES 8 B 365 ALA ILE VAL THR ASP ALA GLN ASN CYS GLY ASN ILE LEU SEQRES 9 B 365 ALA GLY VAL GLY PRO PHE ALA ILE GLU ARG GLY LEU VAL SEQRES 10 B 365 ALA ALA SER GLY ASP GLU THR ARG VAL ALA ILE PHE MET SEQRES 11 B 365 GLU ASN THR GLY GLN VAL ALA VAL ALA THR VAL ARG THR SEQRES 12 B 365 PRO GLY GLY SER VAL THR TYR ALA GLY ASP ALA ALA ILE SEQRES 13 B 365 ASP GLY VAL PRO GLY THR HIS ALA PRO ILE PRO THR GLU SEQRES 14 B 365 PHE ARG ASP THR ALA GLY SER SER CYS GLY ALA LEU LEU SEQRES 15 B 365 PRO SER GLY ASN ALA VAL ASP VAL VAL ASN GLY LEU PRO SEQRES 16 B 365 VAL THR LEU ILE ASP ASN GLY MET PRO CYS VAL VAL MET SEQRES 17 B 365 LYS ALA ALA ASP VAL GLY ILE THR GLY TYR GLU ASP ARG SEQRES 18 B 365 ASP SER LEU ASP ALA ASN ALA GLU LEU LYS ALA LYS ILE SEQRES 19 B 365 GLU ALA ILE ARG LEU ALA VAL GLY GLU LEU MET ASN LEU SEQRES 20 B 365 GLY ASP VAL THR GLU LYS SER VAL PRO LYS MET MET LEU SEQRES 21 B 365 VAL ALA PRO PRO ARG ASP GLY GLY ALA VAL CYS VAL ARG SEQRES 22 B 365 SER PHE ILE PRO HIS ARG ALA HIS ALA THR ILE GLY VAL SEQRES 23 B 365 LEU GLY ALA VAL SER VAL ALA THR ALA CYS LEU ILE PRO SEQRES 24 B 365 GLY SER PRO ALA ALA GLU VAL ALA VAL VAL PRO GLU GLY SEQRES 25 B 365 ALA ARG LYS THR LEU SER ILE GLU HIS PRO THR GLY GLU SEQRES 26 B 365 MET SER CYS VAL LEU GLU VAL ASP ASP ALA GLY ASN VAL SEQRES 27 B 365 VAL SER ALA ALA LEU LEU ARG THR ALA ARG LYS LEU MET SEQRES 28 B 365 ASP GLY VAL VAL PHE VAL LEU GLU HIS HIS HIS HIS HIS SEQRES 29 B 365 HIS HET CL A 401 1 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET CL A 405 1 HET CA B 401 1 HET CA B 402 1 HET CL B 403 1 HET CL B 404 1 HET CL B 405 1 HET CL B 406 1 HET NA B 407 1 HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 3 CL 9(CL 1-) FORMUL 8 CA 2(CA 2+) FORMUL 14 NA NA 1+ FORMUL 15 HOH *224(H2 O) HELIX 1 AA1 ALA A 29 LEU A 31 5 3 HELIX 2 AA2 ASP A 34 GLY A 47 1 14 HELIX 3 AA3 ASP A 61 THR A 64 5 4 HELIX 4 AA4 ILE A 103 ARG A 114 1 12 HELIX 5 AA5 PRO A 144 SER A 147 5 4 HELIX 6 AA6 ALA A 211 GLY A 214 5 4 HELIX 7 AA7 ASP A 220 ALA A 226 1 7 HELIX 8 AA8 ASN A 227 VAL A 241 1 15 HELIX 9 AA9 GLY A 285 CYS A 296 1 12 HELIX 10 AB1 SER A 301 ALA A 307 1 7 HELIX 11 AB2 ALA B 29 LEU B 31 5 3 HELIX 12 AB3 ASP B 34 GLY B 47 1 14 HELIX 13 AB4 ASP B 61 THR B 64 5 4 HELIX 14 AB5 ILE B 103 ARG B 114 1 12 HELIX 15 AB6 PRO B 144 SER B 147 5 4 HELIX 16 AB7 ALA B 211 GLY B 214 5 4 HELIX 17 AB8 ASP B 220 ALA B 226 1 7 HELIX 18 AB9 ASN B 227 ALA B 240 1 14 HELIX 19 AC1 GLY B 285 CYS B 296 1 12 HELIX 20 AC2 PRO B 302 VAL B 306 5 5 SHEET 1 AA112 VAL A 94 THR A 95 0 SHEET 2 AA112 VAL A 80 VAL A 87 -1 N GLN A 86 O THR A 95 SHEET 3 AA112 LYS A 66 LYS A 72 -1 N SER A 71 O ASP A 81 SHEET 4 AA112 SER A 21 LEU A 27 1 N PHE A 26 O VAL A 70 SHEET 5 AA112 SER A 10 GLY A 18 -1 N MET A 14 O TYR A 25 SHEET 6 AA112 ALA A 347 PHE A 356 -1 O MET A 351 N TRP A 15 SHEET 7 AA112 ALA B 347 LEU B 358 -1 O VAL B 354 N ASP A 352 SHEET 8 AA112 MET B 8 GLY B 18 -1 N TRP B 15 O MET B 351 SHEET 9 AA112 SER B 21 LEU B 27 -1 O TYR B 25 N MET B 14 SHEET 10 AA112 LYS B 66 LYS B 72 1 O ALA B 68 N PHE B 26 SHEET 11 AA112 VAL B 80 VAL B 87 -1 O LEU B 83 N VAL B 69 SHEET 12 AA112 VAL B 94 THR B 95 -1 O THR B 95 N GLN B 86 SHEET 1 AA232 ASP A 189 VAL A 191 0 SHEET 2 AA232 LEU A 194 ASP A 200 -1 O VAL A 196 N ASP A 189 SHEET 3 AA232 PRO A 204 LYS A 209 -1 O CYS A 205 N ILE A 199 SHEET 4 AA232 LYS A 257 ALA A 262 1 O MET A 259 N VAL A 206 SHEET 5 AA232 VAL A 270 PHE A 275 -1 O CYS A 271 N ALA A 262 SHEET 6 AA232 ARG A 314 HIS A 321 1 O GLU A 320 N VAL A 270 SHEET 7 AA232 GLY A 324 VAL A 332 -1 O LEU A 330 N LYS A 315 SHEET 8 AA232 VAL A 338 ARG A 345 -1 O ALA A 342 N VAL A 329 SHEET 9 AA232 ILE A 166 ARG A 171 -1 N PHE A 170 O ALA A 341 SHEET 10 AA232 GLN A 135 ARG A 142 -1 N VAL A 138 O GLU A 169 SHEET 11 AA232 GLU A 123 MET A 130 -1 N ILE A 128 O ALA A 137 SHEET 12 AA232 VAL A 80 VAL A 87 1 N TYR A 82 O PHE A 129 SHEET 13 AA232 LYS A 66 LYS A 72 -1 N SER A 71 O ASP A 81 SHEET 14 AA232 SER A 21 LEU A 27 1 N PHE A 26 O VAL A 70 SHEET 15 AA232 SER A 10 GLY A 18 -1 N MET A 14 O TYR A 25 SHEET 16 AA232 ALA A 347 PHE A 356 -1 O MET A 351 N TRP A 15 SHEET 17 AA232 ALA B 347 LEU B 358 -1 O VAL B 354 N ASP A 352 SHEET 18 AA232 MET B 8 GLY B 18 -1 N TRP B 15 O MET B 351 SHEET 19 AA232 SER B 21 LEU B 27 -1 O TYR B 25 N MET B 14 SHEET 20 AA232 LYS B 66 LYS B 72 1 O ALA B 68 N PHE B 26 SHEET 21 AA232 VAL B 80 VAL B 87 -1 O LEU B 83 N VAL B 69 SHEET 22 AA232 GLU B 123 MET B 130 1 O PHE B 129 N TYR B 82 SHEET 23 AA232 VAL B 136 ARG B 142 -1 O ALA B 137 N ILE B 128 SHEET 24 AA232 ILE B 166 ARG B 171 -1 O GLU B 169 N VAL B 138 SHEET 25 AA232 SER B 340 ARG B 345 -1 O LEU B 343 N THR B 168 SHEET 26 AA232 GLY B 324 GLU B 331 -1 N VAL B 329 O ALA B 342 SHEET 27 AA232 ARG B 314 HIS B 321 -1 N ILE B 319 O MET B 326 SHEET 28 AA232 VAL B 270 PHE B 275 1 N VAL B 270 O GLU B 320 SHEET 29 AA232 LYS B 257 ALA B 262 -1 N ALA B 262 O CYS B 271 SHEET 30 AA232 PRO B 204 LYS B 209 1 N VAL B 206 O MET B 259 SHEET 31 AA232 LEU B 194 ASP B 200 -1 N THR B 197 O VAL B 207 SHEET 32 AA232 VAL B 190 VAL B 191 -1 N VAL B 191 O LEU B 194 LINK OD1 ASP A 266 CA CA B 402 1555 4455 2.49 LINK OD2 ASP A 266 CA CA B 402 1555 4455 2.55 LINK O HOH A 507 NA NA B 407 1555 1555 2.37 LINK O HOH A 513 CA CA B 401 4555 1555 2.55 LINK O HOH A 516 CA CA B 401 4555 1555 2.43 LINK O HOH A 543 CA CA B 401 4555 1555 2.50 LINK O HOH A 584 NA NA B 407 1555 1555 2.39 LINK O ARG B 3 NA NA B 407 1555 1555 2.38 LINK O ARG B 6 CA CA B 401 1555 1555 2.47 LINK O MET B 8 CA CA B 402 1555 1555 2.48 LINK OD1 ASP B 9 CA CA B 402 1555 1555 2.40 LINK OE1 GLU B 359 CA CA B 401 1555 1555 2.37 LINK OE2 GLU B 359 CA CA B 401 1555 1555 2.49 LINK OE2 GLU B 359 CA CA B 402 1555 1555 2.35 LINK CA CA B 401 O HOH B 527 1555 1555 2.46 LINK CA CA B 401 O HOH B 543 1555 1555 2.45 LINK CA CA B 402 O HOH B 543 1555 1555 2.63 LINK CA CA B 402 O HOH B 545 1555 1555 2.43 LINK CA CA B 402 O HOH B 572 1555 1555 2.60 LINK NA NA B 407 O HOH B 586 1555 1555 2.60 LINK NA NA B 407 O HOH B 597 1555 1555 2.50 CISPEP 1 SER A 48 PRO A 49 0 -2.05 CISPEP 2 VAL A 255 PRO A 256 0 -5.69 CISPEP 3 ILE A 276 PRO A 277 0 -0.47 CISPEP 4 SER B 48 PRO B 49 0 -1.96 CISPEP 5 VAL B 255 PRO B 256 0 -0.84 CISPEP 6 ILE B 276 PRO B 277 0 -2.30 SITE 1 AC1 4 ILE A 276 PRO A 277 HIS A 278 ARG A 279 SITE 1 AC2 3 GLY A 101 VAL A 286 LEU A 287 SITE 1 AC3 2 ASP A 220 ARG A 221 SITE 1 AC4 2 VAL A 89 HOH A 592 SITE 1 AC5 4 ARG A 28 ALA A 29 SER A 71 HOH A 506 SITE 1 AC6 7 HOH A 513 HOH A 516 HOH A 543 ARG B 6 SITE 2 AC6 7 GLU B 359 HOH B 527 HOH B 543 SITE 1 AC7 7 ASP A 266 MET B 8 ASP B 9 GLU B 359 SITE 2 AC7 7 HOH B 543 HOH B 545 HOH B 572 SITE 1 AC8 4 ARG B 28 ALA B 29 SER B 71 HOH B 532 SITE 1 AC9 1 VAL B 89 SITE 1 AD1 4 ASN B 99 GLY B 101 VAL B 286 LEU B 287 SITE 1 AD2 4 ILE B 276 PRO B 277 HIS B 278 ARG B 279 SITE 1 AD3 5 HOH A 507 HOH A 584 ARG B 3 HOH B 586 SITE 2 AD3 5 HOH B 597 CRYST1 62.776 67.364 161.072 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006208 0.00000