HEADER HYDROLASE/HYDROLASE INHIBITOR 27-MAY-19 6P4E TITLE LEISHMANIA MEXICANA CPB IN COMPLEX WITH AN AZA-NITRILE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE PROTEINASE B; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.22.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 GENE: LMCPB, LMCPB2.8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ARCTICEXPRESS (DE3) COMPETENT CELLS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ENDOPEPTIDASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.F.R.RIBEIRO,C.LI,D.DE VITA,J.EMSLEY,C.A.MONTANARI REVDAT 3 25-OCT-23 6P4E 1 REMARK REVDAT 2 01-FEB-23 6P4E 1 SPRSDE LINK REVDAT 1 03-JUN-20 6P4E 0 JRNL AUTH J.F.R.RIBEIRO,D.DE VITA,C.LI,J.EMSLEY,C.A.MONTANARI JRNL TITL HIGH RESOLUTION X-RAY CRYSTAL STRUCTURES OF LMCPB2.8 JRNL TITL 2 CO-CRYSTALIZED WITH DIPEPTIDYL AZA-NITRILE INHIBITOR AND JRNL TITL 3 STRUCTURE ACTIVITY RELATIONSHIPS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 112632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.6654 - 4.1940 1.00 3646 220 0.1575 0.1781 REMARK 3 2 4.1940 - 3.3289 1.00 3601 222 0.1229 0.1425 REMARK 3 3 3.3289 - 2.9081 1.00 3631 192 0.1397 0.1571 REMARK 3 4 2.9081 - 2.6422 1.00 3610 181 0.1509 0.1820 REMARK 3 5 2.6422 - 2.4528 1.00 3601 206 0.1545 0.1819 REMARK 3 6 2.4528 - 2.3082 1.00 3592 189 0.1646 0.2100 REMARK 3 7 2.3082 - 2.1926 1.00 3636 172 0.1746 0.1931 REMARK 3 8 2.1926 - 2.0971 1.00 3635 180 0.1810 0.1943 REMARK 3 9 2.0971 - 2.0164 1.00 3576 161 0.1924 0.2161 REMARK 3 10 2.0164 - 1.9468 1.00 3638 173 0.2013 0.2297 REMARK 3 11 1.9468 - 1.8859 1.00 3559 194 0.2058 0.2240 REMARK 3 12 1.8859 - 1.8320 1.00 3628 183 0.2081 0.2298 REMARK 3 13 1.8320 - 1.7838 1.00 3608 186 0.2120 0.2328 REMARK 3 14 1.7838 - 1.7403 1.00 3562 203 0.2213 0.2380 REMARK 3 15 1.7403 - 1.7007 1.00 3609 182 0.2161 0.2537 REMARK 3 16 1.7007 - 1.6645 1.00 3589 180 0.2207 0.2488 REMARK 3 17 1.6645 - 1.6312 1.00 3568 212 0.2260 0.2496 REMARK 3 18 1.6312 - 1.6004 1.00 3628 181 0.2226 0.2798 REMARK 3 19 1.6004 - 1.5718 1.00 3609 163 0.2254 0.2571 REMARK 3 20 1.5718 - 1.5452 1.00 3592 232 0.2314 0.2566 REMARK 3 21 1.5452 - 1.5203 1.00 3559 186 0.2391 0.2764 REMARK 3 22 1.5203 - 1.4969 1.00 3637 197 0.2420 0.2609 REMARK 3 23 1.4969 - 1.4748 1.00 3599 175 0.2413 0.2741 REMARK 3 24 1.4748 - 1.4541 1.00 3603 187 0.2566 0.3068 REMARK 3 25 1.4541 - 1.4344 0.99 3536 186 0.2721 0.2814 REMARK 3 26 1.4344 - 1.4158 0.97 3566 178 0.3003 0.3370 REMARK 3 27 1.4158 - 1.3981 0.96 3406 210 0.2975 0.3067 REMARK 3 28 1.3981 - 1.3812 0.95 3406 174 0.2918 0.3348 REMARK 3 29 1.3812 - 1.3652 0.93 3385 172 0.3038 0.3056 REMARK 3 30 1.3652 - 1.3498 0.89 3187 153 0.3271 0.3540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3598 REMARK 3 ANGLE : 1.141 4935 REMARK 3 CHIRALITY : 0.078 517 REMARK 3 PLANARITY : 0.007 637 REMARK 3 DIHEDRAL : 19.098 1306 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112897 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 71.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.23900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KKU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS 0.1M PH8, MPD 65%, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.42300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.42300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.42300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C TRS B 306 LIES ON A SPECIAL POSITION. REMARK 375 N TRS B 306 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 161 O HOH A 401 2.00 REMARK 500 O HOH A 461 O HOH A 604 2.01 REMARK 500 O HOH B 495 O HOH B 600 2.10 REMARK 500 OE1 GLU B 45 O HOH B 402 2.11 REMARK 500 O HOH A 553 O HOH A 566 2.13 REMARK 500 O HOH B 602 O HOH B 621 2.14 REMARK 500 O HOH A 402 O HOH A 447 2.16 REMARK 500 O HOH B 586 O HOH B 597 2.16 REMARK 500 O HOH B 487 O HOH B 634 2.17 REMARK 500 O HOH A 554 O HOH A 576 2.18 REMARK 500 OXT ACT B 303 O HOH B 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 163 17.78 -140.99 REMARK 500 TYR A 210 71.45 -150.44 REMARK 500 ALA B 22 40.16 -95.72 REMARK 500 ASN B 163 16.67 -145.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 189 O REMARK 620 2 GLY A 191 O 109.8 REMARK 620 3 HOH A 535 O 75.9 172.9 REMARK 620 4 HOH A 539 O 84.7 75.9 100.9 REMARK 620 5 HOH A 567 O 108.1 86.6 95.8 161.1 REMARK 620 6 HOH A 589 O 154.3 93.1 80.5 90.0 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 189 O REMARK 620 2 GLY B 191 O 110.3 REMARK 620 3 HOH B 559 O 101.0 85.9 REMARK 620 4 HOH B 564 O 89.8 84.5 167.5 REMARK 620 5 HOH B 581 O 158.3 81.6 97.8 72.9 REMARK 620 6 HOH B 593 O 85.4 164.3 90.3 96.8 83.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GES A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GES B 307 and CYS B REMARK 800 26 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GES B 307 and CYS B REMARK 800 26 DBREF 6P4E A 1 217 UNP P36400 LMCPB_LEIME 125 341 DBREF 6P4E B 1 217 UNP P36400 LMCPB_LEIME 125 341 SEQADV 6P4E ASP A 61 UNP P36400 ASN 185 ENGINEERED MUTATION SEQADV 6P4E ASN A 62 UNP P36400 ASP 186 ENGINEERED MUTATION SEQADV 6P4E SER A 65 UNP P36400 ASP 189 ENGINEERED MUTATION SEQADV 6P4E ASP B 61 UNP P36400 ASN 185 ENGINEERED MUTATION SEQADV 6P4E ASN B 62 UNP P36400 ASP 186 ENGINEERED MUTATION SEQADV 6P4E SER B 65 UNP P36400 ASP 189 ENGINEERED MUTATION SEQRES 1 A 217 ALA VAL PRO ASP ALA VAL ASP TRP ARG GLU LYS GLY ALA SEQRES 2 A 217 VAL THR PRO VAL LYS ASP GLN GLY ALA CYS GLY SER CYS SEQRES 3 A 217 TRP ALA PHE SER ALA VAL GLY ASN ILE GLU GLY GLN TRP SEQRES 4 A 217 TYR LEU ALA GLY HIS GLU LEU VAL SER LEU SER GLU GLN SEQRES 5 A 217 GLN LEU VAL SER CYS ASP ASP MET ASP ASN GLY CYS SER SEQRES 6 A 217 GLY GLY LEU MET LEU GLN ALA PHE ASP TRP LEU LEU GLN SEQRES 7 A 217 ASN THR ASN GLY HIS LEU HIS THR GLU ASP SER TYR PRO SEQRES 8 A 217 TYR VAL SER GLY ASN GLY TYR VAL PRO GLU CYS SER ASN SEQRES 9 A 217 SER SER GLU LEU VAL VAL GLY ALA GLN ILE ASP GLY HIS SEQRES 10 A 217 VAL LEU ILE GLY SER SER GLU LYS ALA MET ALA ALA TRP SEQRES 11 A 217 LEU ALA LYS ASN GLY PRO ILE ALA ILE ALA LEU ASP ALA SEQRES 12 A 217 SER SER PHE MET SER TYR LYS SER GLY VAL LEU THR ALA SEQRES 13 A 217 CYS ILE GLY LYS GLN LEU ASN HIS GLY VAL LEU LEU VAL SEQRES 14 A 217 GLY TYR ASP MET THR GLY GLU VAL PRO TYR TRP VAL ILE SEQRES 15 A 217 LYS ASN SER TRP GLY GLY ASP TRP GLY GLU GLN GLY TYR SEQRES 16 A 217 VAL ARG VAL VAL MET GLY VAL ASN ALA CYS LEU LEU SER SEQRES 17 A 217 GLU TYR PRO VAL SER ALA HIS VAL ARG SEQRES 1 B 217 ALA VAL PRO ASP ALA VAL ASP TRP ARG GLU LYS GLY ALA SEQRES 2 B 217 VAL THR PRO VAL LYS ASP GLN GLY ALA CYS GLY SER CYS SEQRES 3 B 217 TRP ALA PHE SER ALA VAL GLY ASN ILE GLU GLY GLN TRP SEQRES 4 B 217 TYR LEU ALA GLY HIS GLU LEU VAL SER LEU SER GLU GLN SEQRES 5 B 217 GLN LEU VAL SER CYS ASP ASP MET ASP ASN GLY CYS SER SEQRES 6 B 217 GLY GLY LEU MET LEU GLN ALA PHE ASP TRP LEU LEU GLN SEQRES 7 B 217 ASN THR ASN GLY HIS LEU HIS THR GLU ASP SER TYR PRO SEQRES 8 B 217 TYR VAL SER GLY ASN GLY TYR VAL PRO GLU CYS SER ASN SEQRES 9 B 217 SER SER GLU LEU VAL VAL GLY ALA GLN ILE ASP GLY HIS SEQRES 10 B 217 VAL LEU ILE GLY SER SER GLU LYS ALA MET ALA ALA TRP SEQRES 11 B 217 LEU ALA LYS ASN GLY PRO ILE ALA ILE ALA LEU ASP ALA SEQRES 12 B 217 SER SER PHE MET SER TYR LYS SER GLY VAL LEU THR ALA SEQRES 13 B 217 CYS ILE GLY LYS GLN LEU ASN HIS GLY VAL LEU LEU VAL SEQRES 14 B 217 GLY TYR ASP MET THR GLY GLU VAL PRO TYR TRP VAL ILE SEQRES 15 B 217 LYS ASN SER TRP GLY GLY ASP TRP GLY GLU GLN GLY TYR SEQRES 16 B 217 VAL ARG VAL VAL MET GLY VAL ASN ALA CYS LEU LEU SER SEQRES 17 B 217 GLU TYR PRO VAL SER ALA HIS VAL ARG HET NA A 301 1 HET ACT A 302 4 HET ACT A 303 4 HET MPD A 304 8 HET MPD A 305 8 HET GES A 306 52 HET NA B 301 1 HET ACT B 302 4 HET ACT B 303 4 HET ACT B 304 4 HET ACT B 305 4 HET TRS B 306 8 HET GES B 307 52 HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GES 3-TERT-BUTYL-N-[(2S)-1-(2-CYANO-1,2- HETNAM 2 GES DIMETHYLHYDRAZINYL)-4-METHYL-1-OXOPENTAN-2-YL]-1- HETNAM 3 GES METHYL-1H-PYRAZOLE-5-CARBOXAMIDE (NON-PREFERRED NAME) HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 NA 2(NA 1+) FORMUL 4 ACT 6(C2 H3 O2 1-) FORMUL 6 MPD 2(C6 H14 O2) FORMUL 8 GES 2(C18 H30 N6 O2) FORMUL 14 TRS C4 H12 N O3 1+ FORMUL 16 HOH *494(H2 O) HELIX 1 AA1 SER A 25 ALA A 42 1 18 HELIX 2 AA2 SER A 50 ASP A 58 1 9 HELIX 3 AA3 LEU A 68 THR A 80 1 13 HELIX 4 AA4 SER A 123 GLY A 135 1 13 HELIX 5 AA5 ALA A 143 MET A 147 5 5 HELIX 6 AA6 ASN A 203 LEU A 207 5 5 HELIX 7 AA7 SER B 25 ALA B 42 1 18 HELIX 8 AA8 SER B 50 ASP B 58 1 9 HELIX 9 AA9 ASN B 62 GLY B 66 5 5 HELIX 10 AB1 LEU B 68 THR B 80 1 13 HELIX 11 AB2 SER B 123 GLY B 135 1 13 HELIX 12 AB3 ALA B 143 MET B 147 5 5 HELIX 13 AB4 ASN B 203 LEU B 207 5 5 SHEET 1 AA110 ALA A 5 ASP A 7 0 SHEET 2 AA110 HIS A 164 ASP A 172 -1 O TYR A 171 N VAL A 6 SHEET 3 AA110 ILE A 137 LEU A 141 -1 N ILE A 137 O LEU A 168 SHEET 4 AA110 PRO A 211 HIS A 215 -1 O VAL A 212 N ALA A 138 SHEET 5 AA110 GLY A 116 ILE A 120 -1 N ILE A 120 O PRO A 211 SHEET 6 AA110 GLY B 116 ILE B 120 -1 O LEU B 119 N LEU A 119 SHEET 7 AA110 PRO B 211 HIS B 215 -1 O SER B 213 N VAL B 118 SHEET 8 AA110 ILE B 137 LEU B 141 -1 N ALA B 138 O VAL B 212 SHEET 9 AA110 HIS B 164 ASP B 172 -1 O LEU B 168 N ILE B 137 SHEET 10 AA110 ALA B 5 ASP B 7 -1 N VAL B 6 O TYR B 171 SHEET 1 AA214 VAL A 153 LEU A 154 0 SHEET 2 AA214 TYR A 195 VAL A 199 1 O ARG A 197 N LEU A 154 SHEET 3 AA214 TYR A 179 LYS A 183 -1 N TRP A 180 O VAL A 198 SHEET 4 AA214 HIS A 164 ASP A 172 -1 N LEU A 167 O LYS A 183 SHEET 5 AA214 ILE A 137 LEU A 141 -1 N ILE A 137 O LEU A 168 SHEET 6 AA214 PRO A 211 HIS A 215 -1 O VAL A 212 N ALA A 138 SHEET 7 AA214 GLY A 116 ILE A 120 -1 N ILE A 120 O PRO A 211 SHEET 8 AA214 GLY B 116 ILE B 120 -1 O LEU B 119 N LEU A 119 SHEET 9 AA214 PRO B 211 HIS B 215 -1 O SER B 213 N VAL B 118 SHEET 10 AA214 ILE B 137 LEU B 141 -1 N ALA B 138 O VAL B 212 SHEET 11 AA214 HIS B 164 ASP B 172 -1 O LEU B 168 N ILE B 137 SHEET 12 AA214 TYR B 179 LYS B 183 -1 O LYS B 183 N LEU B 167 SHEET 13 AA214 TYR B 195 VAL B 199 -1 O VAL B 198 N TRP B 180 SHEET 14 AA214 VAL B 153 LEU B 154 1 N LEU B 154 O ARG B 197 SHEET 1 AA3 2 HIS A 83 HIS A 85 0 SHEET 2 AA3 2 VAL A 110 GLN A 113 -1 O GLY A 111 N LEU A 84 SHEET 1 AA4 2 HIS B 83 HIS B 85 0 SHEET 2 AA4 2 VAL B 110 GLN B 113 -1 O GLY B 111 N LEU B 84 SSBOND 1 CYS A 23 CYS A 64 1555 1555 2.01 SSBOND 2 CYS A 57 CYS A 102 1555 1555 2.04 SSBOND 3 CYS A 157 CYS A 205 1555 1555 1.99 SSBOND 4 CYS B 23 CYS B 64 1555 1555 2.02 SSBOND 5 CYS B 57 CYS B 102 1555 1555 2.04 SSBOND 6 CYS B 157 CYS B 205 1555 1555 2.00 LINK SG CYS A 26 C15AGES A 306 1555 1555 1.76 LINK SG CYS A 26 C15BGES A 306 1555 1555 1.76 LINK SG CYS B 26 C15AGES B 307 1555 1555 1.76 LINK SG CYS B 26 C15BGES B 307 1555 1555 1.76 LINK O ASP A 189 NA NA A 301 1555 1555 2.39 LINK O GLY A 191 NA NA A 301 1555 1555 2.42 LINK NA NA A 301 O HOH A 535 1555 1555 2.36 LINK NA NA A 301 O HOH A 539 1555 1555 2.36 LINK NA NA A 301 O HOH A 567 1555 1555 2.49 LINK NA NA A 301 O HOH A 589 1555 1555 2.35 LINK O ASP B 189 NA NA B 301 1555 1555 2.32 LINK O GLY B 191 NA NA B 301 1555 1555 2.31 LINK NA NA B 301 O HOH B 559 1555 2655 2.47 LINK NA NA B 301 O HOH B 564 1555 1555 2.37 LINK NA NA B 301 O HOH B 581 1555 1555 2.41 LINK NA NA B 301 O HOH B 593 1555 1555 2.38 SITE 1 AC1 6 ASP A 189 GLY A 191 HOH A 535 HOH A 539 SITE 2 AC1 6 HOH A 567 HOH A 589 SITE 1 AC2 5 ASP A 19 GLY A 21 TYR A 92 GLY A 95 SITE 2 AC2 5 HOH A 582 SITE 1 AC3 6 ARG A 217 HOH A 578 ALA B 132 THR B 174 SITE 2 AC3 6 GLY B 175 HOH B 474 SITE 1 AC4 2 LEU A 162 GLU A 209 SITE 1 AC5 15 GLN A 20 GLY A 24 SER A 25 CYS A 26 SITE 2 AC5 15 TRP A 27 ASN A 62 SER A 65 GLY A 66 SITE 3 AC5 15 GLY A 67 LEU A 68 GLN A 71 ASN A 163 SITE 4 AC5 15 HIS A 164 HOH A 434 HOH A 557 SITE 1 AC6 6 ASP B 189 GLY B 191 HOH B 559 HOH B 564 SITE 2 AC6 6 HOH B 581 HOH B 593 SITE 1 AC7 4 GLU B 10 LYS B 11 ARG B 197 HOH B 583 SITE 1 AC8 3 LYS B 125 HOH B 403 HOH B 406 SITE 1 AC9 1 HOH B 410 SITE 1 AD1 2 MET B 147 HOH B 415 SITE 1 AD2 3 ASP B 4 HOH B 490 HOH B 508 SITE 1 AD3 17 GLN B 20 GLY B 24 SER B 25 TRP B 27 SITE 2 AD3 17 ALA B 28 PHE B 29 SER B 30 SER B 65 SITE 3 AD3 17 GLY B 66 GLY B 67 LEU B 68 GLN B 71 SITE 4 AD3 17 ALA B 140 ASN B 163 HIS B 164 GLY B 165 SITE 5 AD3 17 HOH B 519 SITE 1 AD4 17 GLN B 20 GLY B 24 SER B 25 TRP B 27 SITE 2 AD4 17 ALA B 28 PHE B 29 SER B 30 SER B 65 SITE 3 AD4 17 GLY B 66 GLY B 67 LEU B 68 GLN B 71 SITE 4 AD4 17 ALA B 140 ASN B 163 HIS B 164 GLY B 165 SITE 5 AD4 17 HOH B 519 CRYST1 82.636 82.636 134.846 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012101 0.006987 0.000000 0.00000 SCALE2 0.000000 0.013973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007416 0.00000