HEADER HORMONE 29-MAY-19 6P57 TITLE CRYSTAL STRUCTURE OF THE BETA SUBUNIT OF LUTEINIZING HORMONE CAVEAT 6P57 MAN D 4 HAS WRONG CHIRALITY AT ATOM C1 RESIDUES CYS B 100 CAVEAT 2 6P57 AND GLY B 101 THAT ARE NEXT TO EACH OTHER IN THE SAMPLE CAVEAT 3 6P57 SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE BETWEEN C AND N CAVEAT 4 6P57 IS 43.00 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUTROPIN SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LUTEINIZING HORMONE SUBUNIT BETA,LSH-BETA,LUTROPIN BETA COMPND 5 CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS REPRODUCTION, GLYCOSYLATION, GONADOTROPIC HORMONE, CYSTEINE KNOT, KEYWDS 2 HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR A.MCPHERSON REVDAT 3 11-OCT-23 6P57 1 HETSYN LINK REVDAT 2 29-JUL-20 6P57 1 CAVEAT COMPND REMARK HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 11-DEC-19 6P57 0 JRNL AUTH S.B.LARSON,A.MCPHERSON JRNL TITL THE CRYSTAL STRUCTURE OF THE BETA SUBUNIT OF LUTEINIZING JRNL TITL 2 HORMONE AND A MODEL FOR THE INTACT HORMONE JRNL REF CURR RES STRUCT BIOL 2019 JRNL REFN ESSN 2665-928X JRNL DOI 10.1016/J.CRSTBI.2019.07.001 REMARK 2 REMARK 2 RESOLUTION. 3.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 5482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 289 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.1330 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.1760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 174 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 146.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.60000 REMARK 3 B22 (A**2) : -1.24000 REMARK 3 B33 (A**2) : 2.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.107 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.830 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1922 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1807 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2650 ; 1.804 ; 2.112 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4253 ; 0.999 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 5.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;26.276 ;21.132 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;14.293 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ; 6.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1904 ; 0.015 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): 336 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 898 ; 5.707 ; 7.909 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 897 ; 5.709 ; 7.903 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1116 ; 9.209 ; 8.873 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1117 ; 9.205 ; 8.878 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1023 ; 5.108 ; 8.258 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1023 ; 5.098 ; 8.259 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1531 ; 7.906 ; 9.263 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6530 ;18.073 ;18.000 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6529 ;18.074 ;18.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2949 25.1648 77.6267 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.1098 REMARK 3 T33: 0.1167 T12: -0.0946 REMARK 3 T13: 0.0957 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.7088 L22: 1.8737 REMARK 3 L33: 3.1493 L12: -0.5281 REMARK 3 L13: -0.7475 L23: -1.2007 REMARK 3 S TENSOR REMARK 3 S11: 0.3533 S12: -0.0270 S13: 0.2546 REMARK 3 S21: 0.1473 S22: 0.0135 S23: 0.1196 REMARK 3 S31: -0.5389 S32: -0.0764 S33: -0.3668 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1424 13.5398 79.8246 REMARK 3 T TENSOR REMARK 3 T11: 0.2467 T22: 0.1806 REMARK 3 T33: 0.2015 T12: -0.1316 REMARK 3 T13: -0.0579 T23: 0.0744 REMARK 3 L TENSOR REMARK 3 L11: 4.5494 L22: 2.8888 REMARK 3 L33: 3.9576 L12: -2.7497 REMARK 3 L13: -1.6593 L23: -0.7606 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: 0.1255 S13: 0.5652 REMARK 3 S21: -0.0329 S22: 0.2404 S23: -0.1094 REMARK 3 S31: -0.4122 S32: -0.3632 S33: -0.3076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6P57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6465 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 9.350 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : 0.60000 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HCN REMARK 200 REMARK 200 REMARK: THIN PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP WITH THE DROP COMPOSED OF REMARK 280 EQUAL QUANTITIES OF 20 MG/ML PROTEIN DISSOLVED IN WATER, AND 20% REMARK 280 PEG 3350 PLUS 1% BETA OCTYL GLUCOSIDE DISSOLVED IN 0.10 M MES REMARK 280 BUFFER AT PH 6.5. ROOM TEMPERATURE CRYSTALLIZATION., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.00800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 103.06500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.00800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 103.06500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.00800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.06500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.00800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.06500 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 40.00800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 103.06500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 40.00800 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 103.06500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 40.00800 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 103.06500 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 40.00800 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 103.06500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 40.00800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 40.00800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 40.00800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 40.00800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 40.00800 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 40.00800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 40.00800 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 40.00800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 120.02400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 40.00800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.01600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLU A -18 REMARK 465 MET A -17 REMARK 465 PHE A -16 REMARK 465 GLN A -15 REMARK 465 GLY A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 LEU A -11 REMARK 465 TRP A -10 REMARK 465 LEU A -9 REMARK 465 LEU A -8 REMARK 465 LEU A -7 REMARK 465 GLY A -6 REMARK 465 VAL A -5 REMARK 465 ALA A -4 REMARK 465 GLY A -3 REMARK 465 VAL A -2 REMARK 465 TRP A -1 REMARK 465 ALA A 0 REMARK 465 GLY A 101 REMARK 465 GLY A 102 REMARK 465 PRO A 103 REMARK 465 ARG A 104 REMARK 465 THR A 105 REMARK 465 HIS A 112 REMARK 465 PRO A 113 REMARK 465 PRO A 114 REMARK 465 LEU A 115 REMARK 465 PRO A 116 REMARK 465 ASP A 117 REMARK 465 ILE A 118 REMARK 465 LEU A 119 REMARK 465 PHE A 120 REMARK 465 LEU A 121 REMARK 465 MET B -19 REMARK 465 GLU B -18 REMARK 465 MET B -17 REMARK 465 PHE B -16 REMARK 465 GLN B -15 REMARK 465 GLY B -14 REMARK 465 LEU B -13 REMARK 465 LEU B -12 REMARK 465 LEU B -11 REMARK 465 TRP B -10 REMARK 465 LEU B -9 REMARK 465 LEU B -8 REMARK 465 LEU B -7 REMARK 465 GLY B -6 REMARK 465 VAL B -5 REMARK 465 ALA B -4 REMARK 465 GLY B -3 REMARK 465 VAL B -2 REMARK 465 TRP B -1 REMARK 465 ALA B 0 REMARK 465 LEU B 119 REMARK 465 PHE B 120 REMARK 465 LEU B 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 32 O ALA B 85 1.90 REMARK 500 O LEU B 69 O HOH B 301 1.97 REMARK 500 O HOH A 307 O HOH B 306 1.98 REMARK 500 SG CYS A 26 O CYS A 110 1.99 REMARK 500 CD2 LEU B 62 CA ALA B 85 2.02 REMARK 500 CD2 LEU B 115 O ASP B 117 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 304 O HOH B 304 4556 0.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 7 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PRO A 7 C - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 PRO A 107 C - N - CD ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 7 -55.25 11.41 REMARK 500 LEU A 8 153.39 90.14 REMARK 500 GLN A 10 143.72 -175.10 REMARK 500 ASN A 13 92.70 -64.15 REMARK 500 GLU A 21 116.78 -37.19 REMARK 500 ALA A 22 30.78 74.08 REMARK 500 MET A 41 104.99 -54.72 REMARK 500 ARG A 43 -164.32 -108.52 REMARK 500 PRO A 46 -163.56 -70.00 REMARK 500 VAL A 47 -10.03 83.78 REMARK 500 LEU A 49 159.33 -49.66 REMARK 500 PRO A 53 70.19 -44.91 REMARK 500 VAL A 67 -149.52 -117.43 REMARK 500 ARG A 68 86.17 -153.82 REMARK 500 ARG A 68 89.62 -155.80 REMARK 500 LEU A 69 90.72 -46.37 REMARK 500 PRO A 74 37.63 -74.70 REMARK 500 HIS A 89 -156.79 -150.77 REMARK 500 PRO A 92 172.95 -49.46 REMARK 500 CYS A 93 91.64 -62.12 REMARK 500 SER A 96 -121.26 48.35 REMARK 500 SER A 97 -109.47 -84.44 REMARK 500 PRO A 107 -138.50 7.50 REMARK 500 LEU B 5 157.42 131.53 REMARK 500 LEU B 8 130.27 -28.71 REMARK 500 ASN B 13 121.45 -34.37 REMARK 500 ALA B 22 -53.52 60.33 REMARK 500 PRO B 53 40.44 -73.91 REMARK 500 GLN B 54 -1.58 68.43 REMARK 500 VAL B 56 127.51 -39.11 REMARK 500 TYR B 59 127.09 -30.69 REMARK 500 ARG B 63 -142.78 -126.13 REMARK 500 PRO B 73 160.41 -45.99 REMARK 500 PHE B 82 133.59 -171.44 REMARK 500 CYS B 93 98.25 -59.33 REMARK 500 SER B 97 -70.91 -139.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 310 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH B 311 DISTANCE = 9.40 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN A 205 DBREF 6P57 A -19 121 UNP P04651 LSHB_BOVIN 1 141 DBREF 6P57 B -19 121 UNP P04651 LSHB_BOVIN 1 141 SEQRES 1 A 141 MET GLU MET PHE GLN GLY LEU LEU LEU TRP LEU LEU LEU SEQRES 2 A 141 GLY VAL ALA GLY VAL TRP ALA SER ARG GLY PRO LEU ARG SEQRES 3 A 141 PRO LEU CYS GLN PRO ILE ASN ALA THR LEU ALA ALA GLU SEQRES 4 A 141 LYS GLU ALA CYS PRO VAL CYS ILE THR PHE THR THR SER SEQRES 5 A 141 ILE CYS ALA GLY TYR CYS PRO SER MET LYS ARG VAL LEU SEQRES 6 A 141 PRO VAL ILE LEU PRO PRO MET PRO GLN ARG VAL CYS THR SEQRES 7 A 141 TYR HIS GLU LEU ARG PHE ALA SER VAL ARG LEU PRO GLY SEQRES 8 A 141 CYS PRO PRO GLY VAL ASP PRO MET VAL SER PHE PRO VAL SEQRES 9 A 141 ALA LEU SER CYS HIS CYS GLY PRO CYS ARG LEU SER SER SEQRES 10 A 141 THR ASP CYS GLY GLY PRO ARG THR GLN PRO LEU ALA CYS SEQRES 11 A 141 ASP HIS PRO PRO LEU PRO ASP ILE LEU PHE LEU SEQRES 1 B 141 MET GLU MET PHE GLN GLY LEU LEU LEU TRP LEU LEU LEU SEQRES 2 B 141 GLY VAL ALA GLY VAL TRP ALA SER ARG GLY PRO LEU ARG SEQRES 3 B 141 PRO LEU CYS GLN PRO ILE ASN ALA THR LEU ALA ALA GLU SEQRES 4 B 141 LYS GLU ALA CYS PRO VAL CYS ILE THR PHE THR THR SER SEQRES 5 B 141 ILE CYS ALA GLY TYR CYS PRO SER MET LYS ARG VAL LEU SEQRES 6 B 141 PRO VAL ILE LEU PRO PRO MET PRO GLN ARG VAL CYS THR SEQRES 7 B 141 TYR HIS GLU LEU ARG PHE ALA SER VAL ARG LEU PRO GLY SEQRES 8 B 141 CYS PRO PRO GLY VAL ASP PRO MET VAL SER PHE PRO VAL SEQRES 9 B 141 ALA LEU SER CYS HIS CYS GLY PRO CYS ARG LEU SER SER SEQRES 10 B 141 THR ASP CYS GLY GLY PRO ARG THR GLN PRO LEU ALA CYS SEQRES 11 B 141 ASP HIS PRO PRO LEU PRO ASP ILE LEU PHE LEU HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET FUL C 4 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET FUL D 6 10 HET MAN A 205 11 HET BOG B 207 20 HET BOG B 208 20 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 FUL 2(C6 H12 O5) FORMUL 4 MAN 2(C6 H12 O6) FORMUL 6 BOG 2(C14 H28 O6) FORMUL 8 HOH *23(H2 O) SHEET 1 AA1 2 GLN A 10 ALA A 18 0 SHEET 2 AA1 2 ILE A 27 ALA A 35 -1 O ILE A 33 N ILE A 12 SHEET 1 AA2 2 CYS A 57 ARG A 68 0 SHEET 2 AA2 2 MET A 79 CYS A 90 -1 O LEU A 86 N GLU A 61 SHEET 1 AA3 2 PRO B 11 ALA B 18 0 SHEET 2 AA3 2 ILE B 27 CYS B 34 -1 O PHE B 29 N LEU B 16 SHEET 1 AA4 2 CYS B 57 TYR B 59 0 SHEET 2 AA4 2 CYS B 88 CYS B 90 -1 O HIS B 89 N THR B 58 SHEET 1 AA5 2 LEU B 62 ARG B 68 0 SHEET 2 AA5 2 MET B 79 ALA B 85 -1 O VAL B 80 N VAL B 67 SSBOND 1 CYS A 9 CYS A 57 1555 1555 2.01 SSBOND 2 CYS A 23 CYS A 72 1555 1555 2.05 SSBOND 3 CYS A 26 CYS A 110 1555 1555 2.01 SSBOND 4 CYS A 34 CYS A 88 1555 1555 1.99 SSBOND 5 CYS A 38 CYS A 90 1555 1555 2.02 SSBOND 6 CYS A 93 CYS A 100 1555 1555 2.03 SSBOND 7 CYS B 9 CYS B 57 1555 1555 2.01 SSBOND 8 CYS B 23 CYS B 72 1555 1555 2.02 SSBOND 9 CYS B 26 CYS B 110 1555 1555 2.03 SSBOND 10 CYS B 34 CYS B 88 1555 1555 2.06 SSBOND 11 CYS B 38 CYS B 90 1555 1555 2.04 SSBOND 12 CYS B 93 CYS B 100 1555 1555 2.03 LINK ND2 ASN A 13 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 13 C1 NAG D 1 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUL C 4 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUL D 6 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 CISPEP 1 LEU A 5 ARG A 6 0 -5.37 CISPEP 2 LEU A 49 PRO A 50 0 2.55 CISPEP 3 ARG B 6 PRO B 7 0 24.31 CISPEP 4 LEU B 49 PRO B 50 0 7.04 CRYST1 80.016 80.016 206.130 90.00 90.00 90.00 F 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004851 0.00000