HEADER VIRAL PROTEIN, HYDROLASE 04-JUN-19 6P6Q TITLE HCV NS3/4A PROTEASE DOMAIN OF GENOTYPE 1A3A CHIMERA IN COMPLEX WITH TITLE 2 GRAZOPREVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 4A,SERINE PROTEASE NS3; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.21.98,3.6.1.15,3.6.4.13; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS GENOTYPE 1A (ISOLATE 1); SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 11104; SOURCE 5 STRAIN: ISOLATE 1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HCV NS3/4A PROTEASE HCV PROTEASE DOMAIN GRAZOPREVIR, GZR GENOTYPE KEYWDS 2 1A3A CHIMERA, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.TIMM,C.A.SCHIFFER REVDAT 2 11-OCT-23 6P6Q 1 COMPND HETNAM REVDAT 1 10-JUN-20 6P6Q 0 JRNL AUTH J.TIMM,K.KOSOVRASTI,M.HENES,F.LEIDNER,S.HOU,N.KURT-YILMAZ, JRNL AUTH 2 C.A.SCHIFFER JRNL TITL MOLECULAR MECHANISM OF PAN-GENOTYPIC HCV NS3/4A PROTEASE JRNL TITL 2 INHIBITION BY GLECAPREVIR AND CHARACTERIZATION OF JRNL TITL 3 GENOTYPE-SPECIFIC STRUCTURAL DIFFERENCES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9585 - 5.0468 1.00 2939 157 0.2640 0.2694 REMARK 3 2 5.0468 - 4.0063 1.00 2922 154 0.1912 0.2363 REMARK 3 3 4.0063 - 3.5001 1.00 2944 156 0.2116 0.2763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2942 REMARK 3 ANGLE : 0.715 4050 REMARK 3 CHIRALITY : 0.047 484 REMARK 3 PLANARITY : 0.003 500 REMARK 3 DIHEDRAL : 16.423 1684 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9272 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.954 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.08190 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.13760 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VOJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5 5 % (NH4)2SO4 24 % REMARK 280 PEG 3350 3 MM GRAZOPREVIR, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.48400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 980 REMARK 465 SER A 981 REMARK 465 HIS A 982 REMARK 465 ARG A 1180 REMARK 465 SER A 1181 REMARK 465 PRO A 1182 REMARK 465 GLY B 981 REMARK 465 SER B 982 REMARK 465 SER B 985A REMARK 465 MET B 985B REMARK 465 ARG B 1180 REMARK 465 SER B 1181 REMARK 465 PRO B 1182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 987 CG CD CE NZ REMARK 470 LYS A 988 CG CD CE NZ REMARK 470 GLU A1013 CG CD OE1 OE2 REMARK 470 GLU A1014 CG CD OE1 OE2 REMARK 470 GLN A1017 CG CD OE1 NE2 REMARK 470 GLN A1021 CG CD OE1 NE2 REMARK 470 ASN A1027 CG OD1 ND2 REMARK 470 GLN A1028 CG CD OE1 NE2 REMARK 470 SER A1066 OG REMARK 470 GLN A1089 CG CD OE1 NE2 REMARK 470 SER A1091 OG REMARK 470 ARG A1092 CG CD NE CZ NH1 NH2 REMARK 470 SER A1093 OG REMARK 470 THR A1098 OG1 CG2 REMARK 470 CYS A1099 SG REMARK 470 SER A1101 OG REMARK 470 SER A1102 OG REMARK 470 ARG A1117 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1127 CG CD1 CD2 REMARK 470 HIS A1149 CB CG ND1 CD2 CE1 NE2 REMARK 470 ARG A1161 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1165 CG CD CE NZ REMARK 470 LYS B 987 CG CD CE NZ REMARK 470 LYS B 988 CG CD CE NZ REMARK 470 THR B1004 OG1 CG2 REMARK 470 ARG B1011 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1013 CG CD OE1 OE2 REMARK 470 GLU B1014 CG CD OE1 OE2 REMARK 470 CYS B1016 SG REMARK 470 GLN B1017 CG CD OE1 NE2 REMARK 470 GLU B1018 CG CD OE1 OE2 REMARK 470 GLN B1021 CG CD OE1 NE2 REMARK 470 LYS B1026 CG CD CE NZ REMARK 470 ASN B1027 CG OD1 ND2 REMARK 470 GLN B1028 CG CD OE1 NE2 REMARK 470 GLU B1032 CG CD OE1 OE2 REMARK 470 SER B1066 OG REMARK 470 LYS B1068 CG CD CE NZ REMARK 470 LYS B1080 CG CD CE NZ REMARK 470 GLN B1089 CG CD OE1 NE2 REMARK 470 ARG B1092 CG CD NE CZ NH1 NH2 REMARK 470 SER B1093 OG REMARK 470 CYS B1099 SG REMARK 470 SER B1101 OG REMARK 470 SER B1102 OG REMARK 470 ASP B1103 CG OD1 OD2 REMARK 470 ARG B1117 CG CD NE CZ NH1 NH2 REMARK 470 ARG B1119 CG CD NE CZ NH1 NH2 REMARK 470 ASP B1121 CG OD1 OD2 REMARK 470 SER B1128 OG REMARK 470 TYR B1134 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B1161 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1165 CG CD CE NZ REMARK 470 GLU B1173 CG CD OE1 OE2 REMARK 470 GLU B1176 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 1042 HH12 ARG A 1109 1.51 REMARK 500 HH21 ARG A 1155 OE1 GLN A 1168 1.59 REMARK 500 O3S MES A 1304 O HOH A 1401 1.96 REMARK 500 N GLY A 990 O3S MES A 1303 2.06 REMARK 500 NH2 ARG B 1062 O2 SO4 B 1306 2.09 REMARK 500 O4 SO4 B 1304 O HOH B 1401 2.09 REMARK 500 O ALA A 1039 O HOH A 1402 2.16 REMARK 500 OD1 ASP B 1025 O HOH B 1402 2.17 REMARK 500 OD1 ASN B 999 O HOH B 1403 2.17 REMARK 500 NH2 ARG A 1155 OE1 GLN A 1168 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A1043 -164.13 -160.90 REMARK 500 LYS A1068 36.25 -97.53 REMARK 500 LEU A1094 173.85 -57.40 REMARK 500 ARG A1118 107.11 -52.97 REMARK 500 ARG A1119 58.54 -116.91 REMARK 500 MET B 984 42.63 -102.48 REMARK 500 LYS B 988 114.95 -162.59 REMARK 500 GLN B1021 -73.00 -69.79 REMARK 500 THR B1054 -176.09 -171.19 REMARK 500 CYS B1099 85.22 -166.83 REMARK 500 SER B1102 49.92 -88.58 REMARK 500 ASP B1103 77.50 -155.48 REMARK 500 SER B1122 39.81 -142.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1097 SG REMARK 620 2 CYS A1145 SG 84.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1145 SG REMARK 620 2 HIS B1149 ND1 85.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SUE A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SUE B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1306 DBREF 6P6Q A 990 1000 UNP P26664 POLG_HCV1 1678 1688 DBREF 6P6Q A 1004 1182 UNP P26664 POLG_HCV1 1030 1208 DBREF 6P6Q B 990 1000 UNP P26664 POLG_HCV1 1678 1688 DBREF 6P6Q B 1004 1182 UNP P26664 POLG_HCV1 1030 1208 SEQADV 6P6Q GLY A 980 UNP P26664 EXPRESSION TAG SEQADV 6P6Q SER A 981 UNP P26664 EXPRESSION TAG SEQADV 6P6Q HIS A 982 UNP P26664 EXPRESSION TAG SEQADV 6P6Q MET A 983 UNP P26664 EXPRESSION TAG SEQADV 6P6Q ALA A 984 UNP P26664 EXPRESSION TAG SEQADV 6P6Q SER A 985 UNP P26664 EXPRESSION TAG SEQADV 6P6Q MET A 986 UNP P26664 EXPRESSION TAG SEQADV 6P6Q LYS A 987 UNP P26664 EXPRESSION TAG SEQADV 6P6Q LYS A 988 UNP P26664 EXPRESSION TAG SEQADV 6P6Q LYS A 989 UNP P26664 EXPRESSION TAG SEQADV 6P6Q SER A 991 UNP P26664 CYS 1679 ENGINEERED MUTATION SEQADV 6P6Q ILE A 998 UNP P26664 VAL 1686 ENGINEERED MUTATION SEQADV 6P6Q ASN A 999 UNP P26664 VAL 1687 ENGINEERED MUTATION SEQADV 6P6Q SER A 1001 UNP P26664 LINKER SEQADV 6P6Q GLY A 1002 UNP P26664 LINKER SEQADV 6P6Q ASP A 1003 UNP P26664 LINKER SEQADV 6P6Q GLU A 1013 UNP P26664 LEU 1039 ENGINEERED MUTATION SEQADV 6P6Q GLU A 1014 UNP P26664 LEU 1040 ENGINEERED MUTATION SEQADV 6P6Q GLN A 1017 UNP P26664 ILE 1043 ENGINEERED MUTATION SEQADV 6P6Q GLU A 1018 UNP P26664 ILE 1044 ENGINEERED MUTATION SEQADV 6P6Q GLN A 1021 UNP P26664 LEU 1047 ENGINEERED MUTATION SEQADV 6P6Q THR A 1040 UNP P26664 ALA 1066 ENGINEERED MUTATION SEQADV 6P6Q SER A 1047 UNP P26664 CYS 1073 ENGINEERED MUTATION SEQADV 6P6Q LEU A 1052 UNP P26664 CYS 1078 ENGINEERED MUTATION SEQADV 6P6Q THR A 1072 UNP P26664 ILE 1098 ENGINEERED MUTATION SEQADV 6P6Q LYS A 1080 UNP P26664 GLN 1106 ENGINEERED MUTATION SEQADV 6P6Q GLN A 1086 UNP P26664 PRO 1112 ENGINEERED MUTATION SEQADV 6P6Q THR A 1123 UNP P26664 ARG 1149 ENGINEERED MUTATION SEQADV 6P6Q LEU A 1132 UNP P26664 ILE 1158 ENGINEERED MUTATION SEQADV 6P6Q SER A 1159 UNP P26664 CYS 1185 ENGINEERED MUTATION SEQADV 6P6Q GLN A 1168 UNP P26664 ASP 1194 ENGINEERED MUTATION SEQADV 6P6Q SER A 1174 UNP P26664 ASN 1200 ENGINEERED MUTATION SEQADV 6P6Q GLY B 981 UNP P26664 EXPRESSION TAG SEQADV 6P6Q SER B 982 UNP P26664 EXPRESSION TAG SEQADV 6P6Q HIS B 983 UNP P26664 EXPRESSION TAG SEQADV 6P6Q MET B 984 UNP P26664 EXPRESSION TAG SEQADV 6P6Q ALA B 985 UNP P26664 EXPRESSION TAG SEQADV 6P6Q SER B 985A UNP P26664 EXPRESSION TAG SEQADV 6P6Q MET B 985B UNP P26664 EXPRESSION TAG SEQADV 6P6Q LYS B 987 UNP P26664 EXPRESSION TAG SEQADV 6P6Q LYS B 988 UNP P26664 EXPRESSION TAG SEQADV 6P6Q LYS B 989 UNP P26664 EXPRESSION TAG SEQADV 6P6Q SER B 991 UNP P26664 CYS 1679 ENGINEERED MUTATION SEQADV 6P6Q ILE B 998 UNP P26664 VAL 1686 ENGINEERED MUTATION SEQADV 6P6Q ASN B 999 UNP P26664 VAL 1687 ENGINEERED MUTATION SEQADV 6P6Q SER B 1001 UNP P26664 LINKER SEQADV 6P6Q GLY B 1002 UNP P26664 LINKER SEQADV 6P6Q ASP B 1003 UNP P26664 LINKER SEQADV 6P6Q GLU B 1013 UNP P26664 LEU 1039 ENGINEERED MUTATION SEQADV 6P6Q GLU B 1014 UNP P26664 LEU 1040 ENGINEERED MUTATION SEQADV 6P6Q GLN B 1017 UNP P26664 ILE 1043 ENGINEERED MUTATION SEQADV 6P6Q GLU B 1018 UNP P26664 ILE 1044 ENGINEERED MUTATION SEQADV 6P6Q GLN B 1021 UNP P26664 LEU 1047 ENGINEERED MUTATION SEQADV 6P6Q THR B 1040 UNP P26664 ALA 1066 ENGINEERED MUTATION SEQADV 6P6Q SER B 1047 UNP P26664 CYS 1073 ENGINEERED MUTATION SEQADV 6P6Q LEU B 1052 UNP P26664 CYS 1078 ENGINEERED MUTATION SEQADV 6P6Q THR B 1072 UNP P26664 ILE 1098 ENGINEERED MUTATION SEQADV 6P6Q LYS B 1080 UNP P26664 GLN 1106 ENGINEERED MUTATION SEQADV 6P6Q GLN B 1086 UNP P26664 PRO 1112 ENGINEERED MUTATION SEQADV 6P6Q THR B 1123 UNP P26664 ARG 1149 ENGINEERED MUTATION SEQADV 6P6Q LEU B 1132 UNP P26664 ILE 1158 ENGINEERED MUTATION SEQADV 6P6Q SER B 1159 UNP P26664 CYS 1185 ENGINEERED MUTATION SEQADV 6P6Q GLN B 1168 UNP P26664 ASP 1194 ENGINEERED MUTATION SEQADV 6P6Q SER B 1174 UNP P26664 ASN 1200 ENGINEERED MUTATION SEQRES 1 A 203 GLY SER HIS MET ALA SER MET LYS LYS LYS GLY SER VAL SEQRES 2 A 203 VAL ILE VAL GLY ARG ILE ASN LEU SER GLY ASP THR ALA SEQRES 3 A 203 TYR ALA GLN GLN THR ARG GLY GLU GLU GLY CYS GLN GLU SEQRES 4 A 203 THR SER GLN THR GLY ARG ASP LYS ASN GLN VAL GLU GLY SEQRES 5 A 203 GLU VAL GLN ILE VAL SER THR ALA THR GLN THR PHE LEU SEQRES 6 A 203 ALA THR SER ILE ASN GLY VAL LEU TRP THR VAL TYR HIS SEQRES 7 A 203 GLY ALA GLY THR ARG THR ILE ALA SER PRO LYS GLY PRO SEQRES 8 A 203 VAL THR GLN MET TYR THR ASN VAL ASP LYS ASP LEU VAL SEQRES 9 A 203 GLY TRP GLN ALA PRO GLN GLY SER ARG SER LEU THR PRO SEQRES 10 A 203 CYS THR CYS GLY SER SER ASP LEU TYR LEU VAL THR ARG SEQRES 11 A 203 HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG GLY ASP SER SEQRES 12 A 203 THR GLY SER LEU LEU SER PRO ARG PRO LEU SER TYR LEU SEQRES 13 A 203 LYS GLY SER SER GLY GLY PRO LEU LEU CYS PRO ALA GLY SEQRES 14 A 203 HIS ALA VAL GLY ILE PHE ARG ALA ALA VAL SER THR ARG SEQRES 15 A 203 GLY VAL ALA LYS ALA VAL GLN PHE ILE PRO VAL GLU SER SEQRES 16 A 203 LEU GLU THR THR MET ARG SER PRO SEQRES 1 B 203 GLY SER HIS MET ALA SER MET LYS LYS LYS GLY SER VAL SEQRES 2 B 203 VAL ILE VAL GLY ARG ILE ASN LEU SER GLY ASP THR ALA SEQRES 3 B 203 TYR ALA GLN GLN THR ARG GLY GLU GLU GLY CYS GLN GLU SEQRES 4 B 203 THR SER GLN THR GLY ARG ASP LYS ASN GLN VAL GLU GLY SEQRES 5 B 203 GLU VAL GLN ILE VAL SER THR ALA THR GLN THR PHE LEU SEQRES 6 B 203 ALA THR SER ILE ASN GLY VAL LEU TRP THR VAL TYR HIS SEQRES 7 B 203 GLY ALA GLY THR ARG THR ILE ALA SER PRO LYS GLY PRO SEQRES 8 B 203 VAL THR GLN MET TYR THR ASN VAL ASP LYS ASP LEU VAL SEQRES 9 B 203 GLY TRP GLN ALA PRO GLN GLY SER ARG SER LEU THR PRO SEQRES 10 B 203 CYS THR CYS GLY SER SER ASP LEU TYR LEU VAL THR ARG SEQRES 11 B 203 HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG GLY ASP SER SEQRES 12 B 203 THR GLY SER LEU LEU SER PRO ARG PRO LEU SER TYR LEU SEQRES 13 B 203 LYS GLY SER SER GLY GLY PRO LEU LEU CYS PRO ALA GLY SEQRES 14 B 203 HIS ALA VAL GLY ILE PHE ARG ALA ALA VAL SER THR ARG SEQRES 15 B 203 GLY VAL ALA LYS ALA VAL GLN PHE ILE PRO VAL GLU SER SEQRES 16 B 203 LEU GLU THR THR MET ARG SER PRO HET SUE A1301 104 HET ZN A1302 1 HET MES A1303 25 HET MES A1304 25 HET SO4 A1305 5 HET SO4 A1306 5 HET SO4 A1307 5 HET SUE B1301 104 HET ZN B1302 1 HET SO4 B1303 5 HET SO4 B1304 5 HET SO4 B1305 5 HET SO4 B1306 5 HETNAM SUE (1AR,5S,8S,10R,22AR)-5-TERT-BUTYL-N-{(1R,2S)-1- HETNAM 2 SUE [(CYCLOPROPYLSULFONYL)CARBAMOYL]-2- HETNAM 3 SUE ETHENYLCYCLOPROPYL}-14-METHOXY-3,6-DI OXO-1,1A,3,4,5, HETNAM 4 SUE 6,9,10,18,19,20,21,22,22A-TETRADECAHYDRO-8H-7,10- HETNAM 5 SUE METHANOCYCLOPROPA[18,19][1,10,3, HETNAM 6 SUE 6]DIOXADIAZACYCLONONADEC INO[11,12-B]QUINOXALINE-8- HETNAM 7 SUE CARBOXAMIDE HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM SO4 SULFATE ION HETSYN SUE GRAZOPREVIR, MK-5172 FORMUL 3 SUE 2(C38 H50 N6 O9 S) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 MES 2(C6 H13 N O4 S) FORMUL 7 SO4 7(O4 S 2-) FORMUL 16 HOH *52(H2 O) HELIX 1 AA1 GLY A 1012 GLY A 1023 1 12 HELIX 2 AA2 VAL A 1055 GLY A 1060 1 6 HELIX 3 AA3 SER A 1133 LEU A 1135 5 3 HELIX 4 AA4 PRO A 1171 MET A 1179 1 9 HELIX 5 AA5 GLY B 1012 GLY B 1023 1 12 HELIX 6 AA6 VAL B 1055 GLY B 1060 1 6 HELIX 7 AA7 VAL B 1078 ASP B 1081 5 4 HELIX 8 AA8 SER B 1133 LYS B 1136 5 4 HELIX 9 AA9 VAL B 1172 THR B 1177 1 6 SHEET 1 AA1 7 TYR A1006 GLN A1009 0 SHEET 2 AA1 7 VAL A 993 ASN A 999 -1 N ARG A 997 O GLN A1008 SHEET 3 AA1 7 VAL A1033 SER A1037 -1 O ILE A1035 N VAL A 995 SHEET 4 AA1 7 THR A1042 ILE A1048 -1 O ALA A1045 N GLN A1034 SHEET 5 AA1 7 VAL A1051 THR A1054 -1 O VAL A1051 N ILE A1048 SHEET 6 AA1 7 LEU A1082 GLN A1086 -1 O TRP A1085 N LEU A1052 SHEET 7 AA1 7 TYR A1075 ASN A1077 -1 N ASN A1077 O LEU A1082 SHEET 1 AA2 2 ILE A1064 SER A1066 0 SHEET 2 AA2 2 GLY A1069 VAL A1071 -1 O GLY A1069 N SER A1066 SHEET 1 AA3 7 ASP A1103 VAL A1107 0 SHEET 2 AA3 7 VAL A1113 ARG A1118 -1 O ILE A1114 N LEU A1106 SHEET 3 AA3 7 THR A1123 PRO A1131 -1 O SER A1125 N ARG A1117 SHEET 4 AA3 7 VAL A1163 PHE A1169 -1 O VAL A1167 N GLY A1124 SHEET 5 AA3 7 ALA A1150 THR A1160 -1 N ALA A1156 O GLN A1168 SHEET 6 AA3 7 PRO A1142 LEU A1144 -1 N LEU A1143 O VAL A1151 SHEET 7 AA3 7 ASP A1103 VAL A1107 -1 N TYR A1105 O LEU A1144 SHEET 1 AA4 7 TYR B1006 GLN B1009 0 SHEET 2 AA4 7 VAL B 993 ASN B 999 -1 N ARG B 997 O GLN B1008 SHEET 3 AA4 7 VAL B1033 SER B1037 -1 O SER B1037 N VAL B 993 SHEET 4 AA4 7 THR B1042 ILE B1048 -1 O ALA B1045 N GLN B1034 SHEET 5 AA4 7 VAL B1051 THR B1054 -1 O TRP B1053 N THR B1046 SHEET 6 AA4 7 LEU B1082 GLN B1086 -1 O TRP B1085 N LEU B1052 SHEET 7 AA4 7 TYR B1075 ASN B1077 -1 N ASN B1077 O LEU B1082 SHEET 1 AA5 2 ILE B1064 SER B1066 0 SHEET 2 AA5 2 GLY B1069 VAL B1071 -1 O GLY B1069 N SER B1066 SHEET 1 AA6 7 LEU B1104 VAL B1107 0 SHEET 2 AA6 7 VAL B1113 ARG B1118 -1 O VAL B1116 N LEU B1104 SHEET 3 AA6 7 THR B1123 PRO B1131 -1 O SER B1125 N ARG B1117 SHEET 4 AA6 7 VAL B1163 PRO B1171 -1 O VAL B1167 N GLY B1124 SHEET 5 AA6 7 ALA B1150 THR B1160 -1 N VAL B1158 O ALA B1166 SHEET 6 AA6 7 PRO B1142 LEU B1144 -1 N LEU B1143 O VAL B1151 SHEET 7 AA6 7 LEU B1104 VAL B1107 -1 N TYR B1105 O LEU B1144 LINK SG CYS A1097 ZN ZN A1302 1555 1555 2.52 LINK SG CYS A1145 ZN ZN A1302 1555 1555 2.47 LINK SG CYS B1145 ZN ZN B1302 1555 1555 2.39 LINK ND1 HIS B1149 ZN ZN B1302 1555 1555 2.69 SITE 1 AC1 17 GLN A1041 PHE A1043 TYR A1056 HIS A1057 SITE 2 AC1 17 VAL A1078 ASP A1081 LEU A1132 LEU A1135 SITE 3 AC1 17 LYS A1136 GLY A1137 SER A1139 PHE A1154 SITE 4 AC1 17 ARG A1155 ALA A1156 ALA A1157 GLN A1168 SITE 5 AC1 17 PRO B1067 SITE 1 AC2 3 CYS A1097 CYS A1145 HIS A1149 SITE 1 AC3 7 LYS A 989 GLY A 990 SER A1020 THR A1038 SITE 2 AC3 7 ALA A1039 THR A1040 SO4 A1307 SITE 1 AC4 5 SER A1093 THR A1095 HOH A1401 THR B1040 SITE 2 AC4 5 SO4 B1306 SITE 1 AC5 2 TYR A1056 HOH A1408 SITE 1 AC6 4 SER A1066 LYS A1068 VAL A1071 LYS B1136 SITE 1 AC7 5 LYS A 989 THR A1040 ARG A1062 MES A1303 SITE 2 AC7 5 HOH B1408 SITE 1 AC8 20 PRO A1067 LYS A1068 CYS A1099 GLN B1041 SITE 2 AC8 20 PHE B1043 HIS B1057 GLY B1058 VAL B1078 SITE 3 AC8 20 ASP B1081 LEU B1132 LEU B1135 LYS B1136 SITE 4 AC8 20 GLY B1137 SER B1138 SER B1139 PHE B1154 SITE 5 AC8 20 ARG B1155 ALA B1156 ALA B1157 GLN B1168 SITE 1 AC9 3 CYS B1097 CYS B1145 HIS B1149 SITE 1 AD1 1 TYR B1056 SITE 1 AD2 5 LYS B 989 THR B1040 ARG B1062 HOH B1401 SITE 2 AD2 5 HOH B1405 SITE 1 AD3 2 ARG B1155 SER B1174 SITE 1 AD4 5 MES A1304 LYS B 989 GLY B 990 ALA B1039 SITE 2 AD4 5 ARG B1062 CRYST1 49.750 58.968 65.891 90.00 100.27 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020101 0.000000 0.003640 0.00000 SCALE2 0.000000 0.016958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015423 0.00000