HEADER VIRAL PROTEIN, HYDROLASE 04-JUN-19 6P6V TITLE HCV NS3/4A PROTEASE DOMAIN OF GENOTYPE 5A IN COMPLEX WITH GLECAPREVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 4A,SERINE PROTEASE NS3; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.98,3.6.1.15,3.6.4.13; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS GENOTYPE 5A (ISOLATE SA13); SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 356390; SOURCE 5 STRAIN: ISOLATE SA13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HCV NS3/4A PROTEASE HCV PROTEASE DOMAIN GLECAPREVIR, GLE GENOTYPE KEYWDS 2 1A3A CHIMERA, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.TIMM,C.A.SCHIFFER REVDAT 2 11-OCT-23 6P6V 1 COMPND HETNAM REVDAT 1 10-JUN-20 6P6V 0 JRNL AUTH J.TIMM,K.KOSOVRASTI,M.HENES,F.LEIDNER,S.HOU,N.KURT-YILMAZ, JRNL AUTH 2 C.A.SCHIFFER JRNL TITL MOLECULAR MECHANISM OF PAN-GENOTYPIC HCV NS3/4A PROTEASE JRNL TITL 2 INHIBITION BY GLECAPREVIR AND CHARACTERIZATION OF JRNL TITL 3 GENOTYPE-SPECIFIC STRUCTURAL DIFFERENCES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3211: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 13515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.8159 - 3.4164 0.98 2755 146 0.1519 0.1952 REMARK 3 2 3.4164 - 2.7131 0.97 2606 137 0.1675 0.2238 REMARK 3 3 2.7131 - 2.3706 0.96 2540 134 0.1839 0.2445 REMARK 3 4 2.3706 - 2.1540 0.95 2502 132 0.1751 0.1985 REMARK 3 5 2.1540 - 2.0000 0.94 2435 128 0.1745 0.2179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1584 REMARK 3 ANGLE : 0.799 2184 REMARK 3 CHIRALITY : 0.051 249 REMARK 3 PLANARITY : 0.005 284 REMARK 3 DIHEDRAL : 12.606 930 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13535 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 22.814 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 5VOJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TMAO 0.1 M TRIS PH 8.5 16% PEG REMARK 280 2000 MME 3 MM GLECAPREVIR, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.77550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.89400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.07350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.89400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.77550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.07350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 980 REMARK 465 SER A 981 REMARK 465 HIS A 982 REMARK 465 MET A 983 REMARK 465 ALA A 984 REMARK 465 SER A 985 REMARK 465 MET A 986 REMARK 465 LYS A 987 REMARK 465 LYS A 988 REMARK 465 LYS A 989 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1026 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 1176 O HOH A 1301 2.03 REMARK 500 O HOH A 1508 O HOH A 1522 2.08 REMARK 500 O HOH A 1419 O HOH A 1474 2.12 REMARK 500 O HOH A 1489 O HOH A 1513 2.13 REMARK 500 O HOH A 1481 O HOH A 1516 2.15 REMARK 500 O LEU A 1175 OG1 THR A 1178 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1449 O HOH A 1469 4556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1038 -166.97 -101.22 REMARK 500 PHE A1043 -160.65 -165.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1525 DISTANCE = 6.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1097 SG REMARK 620 2 CYS A1099 SG 97.2 REMARK 620 3 CYS A1145 SG 117.8 113.3 REMARK 620 4 HIS A1149 ND1 115.7 122.1 92.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O31 A 1204 DBREF 6P6V A 990 1000 UNP O91936 POLG_HCVSA 1679 1689 DBREF 6P6V A 1004 1182 UNP O91936 POLG_HCVSA 1031 1209 SEQADV 6P6V GLY A 980 UNP O91936 EXPRESSION TAG SEQADV 6P6V SER A 981 UNP O91936 EXPRESSION TAG SEQADV 6P6V HIS A 982 UNP O91936 EXPRESSION TAG SEQADV 6P6V MET A 983 UNP O91936 EXPRESSION TAG SEQADV 6P6V ALA A 984 UNP O91936 EXPRESSION TAG SEQADV 6P6V SER A 985 UNP O91936 EXPRESSION TAG SEQADV 6P6V MET A 986 UNP O91936 EXPRESSION TAG SEQADV 6P6V LYS A 987 UNP O91936 EXPRESSION TAG SEQADV 6P6V LYS A 988 UNP O91936 EXPRESSION TAG SEQADV 6P6V LYS A 989 UNP O91936 EXPRESSION TAG SEQADV 6P6V SER A 1001 UNP O91936 LINKER SEQADV 6P6V GLY A 1002 UNP O91936 LINKER SEQADV 6P6V ASP A 1003 UNP O91936 LINKER SEQADV 6P6V GLU A 1013 UNP O91936 VAL 1040 ENGINEERED MUTATION SEQADV 6P6V GLU A 1014 UNP O91936 LEU 1041 ENGINEERED MUTATION SEQADV 6P6V GLN A 1017 UNP O91936 ILE 1044 ENGINEERED MUTATION SEQADV 6P6V GLU A 1018 UNP O91936 ILE 1045 ENGINEERED MUTATION SEQADV 6P6V GLN A 1021 UNP O91936 LEU 1048 ENGINEERED MUTATION SEQRES 1 A 203 GLY SER HIS MET ALA SER MET LYS LYS LYS GLY SER VAL SEQRES 2 A 203 ALA ILE VAL GLY ARG ILE ILE LEU SER GLY ASP THR ALA SEQRES 3 A 203 TYR ALA GLN GLN THR ARG GLY GLU GLU GLY ALA GLN GLU SEQRES 4 A 203 VAL SER GLN THR GLY ARG ASP LYS ASN GLU ALA GLU GLY SEQRES 5 A 203 GLU VAL GLN VAL LEU SER THR ALA THR GLN THR PHE LEU SEQRES 6 A 203 GLY THR CYS ILE ASN GLY VAL MET TRP THR VAL PHE HIS SEQRES 7 A 203 GLY ALA GLY ALA LYS THR LEU ALA GLY PRO LYS GLY PRO SEQRES 8 A 203 VAL VAL GLN MET TYR THR ASN VAL ASP LYS ASP LEU VAL SEQRES 9 A 203 GLY TRP PRO THR PRO PRO GLY THR ARG SER LEU THR PRO SEQRES 10 A 203 CYS THR CYS GLY SER ALA ASP LEU TYR LEU VAL THR ARG SEQRES 11 A 203 HIS ALA ASP VAL VAL PRO ALA ARG ARG ARG GLY ASP THR SEQRES 12 A 203 ARG ALA SER LEU LEU SER PRO ARG PRO ILE SER TYR LEU SEQRES 13 A 203 LYS GLY SER SER GLY GLY PRO VAL MET CYS PRO SER GLY SEQRES 14 A 203 HIS VAL VAL GLY VAL PHE ARG ALA ALA VAL CYS THR ARG SEQRES 15 A 203 GLY VAL ALA LYS ALA LEU ASP PHE ILE PRO VAL GLU ASN SEQRES 16 A 203 LEU GLU THR THR MET ARG SER PRO HET ZN A1201 1 HET CL A1202 1 HET EDO A1203 10 HET O31 A1204 104 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM O31 (3AR,7S,10S,12R,21E,24AR)-7-TERT-BUTYL-N-[(1R,2R)-2- HETNAM 2 O31 (DIFLUOROMETHYL)-1-{[(1-METHYLCYCLOPROPYL) HETNAM 3 O31 SULFONYL]CARBAMOYL}CYCLOP ROPYL]-20,20-DIFLUORO-5,8- HETNAM 4 O31 DIOXO-2,3,3A,5,6,7,8,11,12,20,23,24A-DODECAHYDRO-1H, HETNAM 5 O31 10H-9,12-METHANOCYCLOPENTA[18,19][1,10,17, 3, HETNAM 6 O31 6]TRIOXADIAZACYCLONONADECINO[11,12-B]QUINOXALINE-10- HETNAM 7 O31 CARBOXAMIDE HETSYN EDO ETHYLENE GLYCOL HETSYN O31 GLECAPREVIR FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- FORMUL 4 EDO C2 H6 O2 FORMUL 5 O31 C38 H46 F4 N6 O9 S FORMUL 6 HOH *225(H2 O) HELIX 1 AA1 GLY A 1012 GLY A 1023 1 12 HELIX 2 AA2 VAL A 1055 GLY A 1060 1 6 HELIX 3 AA3 ILE A 1132 LYS A 1136 1 5 HELIX 4 AA4 VAL A 1172 SER A 1181 1 10 SHEET 1 AA1 7 THR A1004 GLN A1009 0 SHEET 2 AA1 7 ALA A 993 SER A1001 -1 N ILE A 999 O TYR A1006 SHEET 3 AA1 7 VAL A1033 SER A1037 -1 O VAL A1035 N GLY A 996 SHEET 4 AA1 7 THR A1042 ILE A1048 -1 O PHE A1043 N LEU A1036 SHEET 5 AA1 7 VAL A1051 THR A1054 -1 O VAL A1051 N ILE A1048 SHEET 6 AA1 7 LEU A1082 PRO A1086 -1 O TRP A1085 N MET A1052 SHEET 7 AA1 7 TYR A1075 ASN A1077 -1 N ASN A1077 O LEU A1082 SHEET 1 AA2 7 ASP A1103 VAL A1107 0 SHEET 2 AA2 7 VAL A1113 ARG A1118 -1 O ALA A1116 N LEU A1104 SHEET 3 AA2 7 ARG A1123 PRO A1131 -1 O SER A1125 N ARG A1117 SHEET 4 AA2 7 VAL A1163 PRO A1171 -1 O LEU A1167 N ALA A1124 SHEET 5 AA2 7 VAL A1150 THR A1160 -1 N ALA A1156 O ASP A1168 SHEET 6 AA2 7 PRO A1142 MET A1144 -1 N VAL A1143 O VAL A1151 SHEET 7 AA2 7 ASP A1103 VAL A1107 -1 N TYR A1105 O MET A1144 LINK SG CYS A1097 ZN ZN A1201 1555 1555 2.26 LINK SG CYS A1099 ZN ZN A1201 1555 1555 2.36 LINK SG CYS A1145 ZN ZN A1201 1555 1555 2.28 LINK ND1 HIS A1149 ZN ZN A1201 1555 1555 2.17 SITE 1 AC1 4 CYS A1097 CYS A1099 CYS A1145 HIS A1149 SITE 1 AC2 3 ARG A1155 ASN A1174 HOH A1493 SITE 1 AC3 2 VAL A1078 HOH A1338 SITE 1 AC4 26 THR A1004 ALA A1005 TYR A1006 GLN A1041 SITE 2 AC4 26 THR A1042 PHE A1056 HIS A1057 ASP A1081 SITE 3 AC4 26 ARG A1123 ILE A1132 LEU A1135 LYS A1136 SITE 4 AC4 26 GLY A1137 SER A1138 SER A1139 PHE A1154 SITE 5 AC4 26 ARG A1155 ALA A1156 ALA A1157 ASP A1168 SITE 6 AC4 26 HOH A1326 HOH A1364 HOH A1368 HOH A1384 SITE 7 AC4 26 HOH A1386 HOH A1420 CRYST1 39.551 60.147 83.788 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025284 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011935 0.00000