HEADER VIRAL PROTEIN 06-JUN-19 6P7S TITLE CRYSTAL STRUCTURE OF THE CEDAR HENIPAVIRUS ATTACHMENT G GLYCOPROTEIN TITLE 2 GLOBULAR DOMAIN IN COMPLEX WITH THE RECEPTOR EPHRIN-B1 CAVEAT 6P7S NAG G 1 HAS WRONG CHIRALITY AT ATOM C1 NAG A 702 HAS WRONG CAVEAT 2 6P7S CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATTACHMENT GLYCOPROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: GLOBULAR DOMAIN (UNP RESIDUES 193-622); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: EPHRIN-B1; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: UNP RESIDUES 29-170; COMPND 10 SYNONYM: CEK5 RECEPTOR LIGAND,CEK5-L,EFL-3,ELK LIGAND,ELK-L,EPH- COMPND 11 RELATED RECEPTOR TYROSINE KINASE LIGAND 2,LERK-2,STIMULATED BY COMPND 12 RETINOIC ACID GENE 1 PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CEDAR VIRUS; SOURCE 3 ORGANISM_TAXID: 1221391; SOURCE 4 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 GENE: EFNB1, EPL2, EPLG2, LERK2, STRA1; SOURCE 11 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS CEDAR VIRUS, ATTACHMENT, GLYCOPROTEIN, G PROTEIN, VIRAL PROTEIN, KEYWDS 2 RECEPTOR, EPHRIN-B1, HENIPAVIRUS EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,D.B.NIKOLOV,Y.XU REVDAT 4 29-JUL-20 6P7S 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 23-OCT-19 6P7S 1 JRNL REVDAT 2 09-OCT-19 6P7S 1 JRNL REVDAT 1 25-SEP-19 6P7S 0 JRNL AUTH E.D.LAING,C.K.NAVARATNARAJAH,S.CHELIOUT DA SILVA, JRNL AUTH 2 S.R.PETZING,Y.XU,S.L.STERLING,G.A.MARSH,L.F.WANG,M.AMAYA, JRNL AUTH 3 D.B.NIKOLOV,R.CATTANEO,C.C.BRODER,K.XU JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSES REVEAL PROMISCUOUS AND JRNL TITL 2 SPECIES SPECIFIC USE OF EPHRIN RECEPTORS BY CEDAR VIRUS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 20707 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31548390 JRNL DOI 10.1073/PNAS.1911773116 REMARK 2 REMARK 2 RESOLUTION. 3.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.390 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9439 - 8.3943 0.99 2583 143 0.1892 0.1887 REMARK 3 2 8.3943 - 6.6698 1.00 2540 143 0.1976 0.2334 REMARK 3 3 6.6698 - 5.8287 1.00 2532 144 0.1820 0.2704 REMARK 3 4 5.8287 - 5.2967 1.00 2544 145 0.1622 0.1917 REMARK 3 5 5.2967 - 4.9176 1.00 2523 144 0.1581 0.1843 REMARK 3 6 4.9176 - 4.6280 1.00 2520 144 0.1528 0.2002 REMARK 3 7 4.6280 - 4.3964 1.00 2514 142 0.1721 0.2248 REMARK 3 8 4.3964 - 4.2052 1.00 2513 144 0.1999 0.2253 REMARK 3 9 4.2052 - 4.0434 1.00 2518 146 0.2262 0.2583 REMARK 3 10 4.0434 - 3.9039 1.00 2497 144 0.2366 0.2688 REMARK 3 11 3.9039 - 3.7819 1.00 2524 147 0.2498 0.2861 REMARK 3 12 3.7819 - 3.6739 1.00 2503 142 0.2639 0.3242 REMARK 3 13 3.6739 - 3.5772 1.00 2498 140 0.2985 0.3236 REMARK 3 14 3.5772 - 3.4900 0.96 2428 139 0.3393 0.3762 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 132.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 9371 REMARK 3 ANGLE : 1.522 12689 REMARK 3 CHIRALITY : 0.066 1414 REMARK 3 PLANARITY : 0.009 1597 REMARK 3 DIHEDRAL : 19.190 3480 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 3720 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 1183 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P7S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9192 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37299 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.73400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, PH 8.5, 20% PEG6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.58467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.79233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.68850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.89617 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.48083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 194 REMARK 465 MET A 195 REMARK 465 TYR A 196 REMARK 465 SER A 197 REMARK 465 THR A 198 REMARK 465 ASN A 199 REMARK 465 ALA A 200 REMARK 465 TYR A 201 REMARK 465 ALA A 202 REMARK 465 GLU A 203 REMARK 465 LEU A 204 REMARK 465 ALA A 205 REMARK 465 GLY A 206 REMARK 465 PRO A 207 REMARK 465 PRO B 168 REMARK 465 ASN B 169 REMARK 465 ALA B 170 REMARK 465 ALA C 194 REMARK 465 MET C 195 REMARK 465 TYR C 196 REMARK 465 SER C 197 REMARK 465 THR C 198 REMARK 465 ASN C 199 REMARK 465 ALA C 200 REMARK 465 TYR C 201 REMARK 465 ALA C 202 REMARK 465 GLU C 203 REMARK 465 LEU C 204 REMARK 465 ALA C 205 REMARK 465 GLY C 206 REMARK 465 PRO C 207 REMARK 465 ALA D 29 REMARK 465 PRO D 168 REMARK 465 ASN D 169 REMARK 465 ALA D 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 167 CG OD1 OD2 REMARK 470 ASP D 167 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 311 C2 NAG A 701 1.80 REMARK 500 ND2 ASN C 425 C2 NAG H 1 2.00 REMARK 500 OG SER C 573 NH1 ARG C 603 2.14 REMARK 500 ND2 ASN C 311 C2 NAG C 701 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 42 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO B 95 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 CYS C 239 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 PRO C 354 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 218 70.31 45.64 REMARK 500 LYS A 456 70.03 51.31 REMARK 500 SER A 480 -161.12 -124.18 REMARK 500 LEU A 535 -67.11 -101.43 REMARK 500 GLU A 554 -178.52 -172.57 REMARK 500 THR A 564 -60.13 -101.81 REMARK 500 ARG A 580 -80.85 -114.76 REMARK 500 ASN A 605 46.07 34.48 REMARK 500 PRO B 119 47.58 -86.46 REMARK 500 THR B 155 -72.40 -83.54 REMARK 500 ASP C 218 70.56 46.98 REMARK 500 LEU C 327 -17.24 80.59 REMARK 500 ASP C 328 -67.94 -100.13 REMARK 500 THR C 424 -62.38 -98.68 REMARK 500 THR C 443 -63.59 -120.48 REMARK 500 SER C 480 -163.47 -123.62 REMARK 500 VAL C 505 -54.88 -128.16 REMARK 500 LEU C 535 -66.46 -105.16 REMARK 500 ARG C 580 -75.75 -120.19 REMARK 500 ASN C 605 47.27 33.47 REMARK 500 PRO D 42 -168.86 -74.58 REMARK 500 LYS D 43 -8.04 70.07 REMARK 500 HIS D 105 -17.57 67.04 REMARK 500 ARG D 156 -8.80 70.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 6P7S A 194 622 UNP J7H333 J7H333_9MONO 194 622 DBREF 6P7S B 29 170 UNP P52795 EFNB1_MOUSE 29 170 DBREF 6P7S C 194 622 UNP J7H333 J7H333_9MONO 194 622 DBREF 6P7S D 29 170 UNP P52795 EFNB1_MOUSE 29 170 SEQRES 1 A 429 ALA MET TYR SER THR ASN ALA TYR ALA GLU LEU ALA GLY SEQRES 2 A 429 PRO PRO LYS ILE PHE CYS LYS SER VAL SER LYS ASP PRO SEQRES 3 A 429 ASP PHE ARG LEU LYS GLN ILE ASP TYR VAL ILE PRO VAL SEQRES 4 A 429 GLN GLN ASP ARG SER ILE CYS MET ASN ASN PRO LEU LEU SEQRES 5 A 429 ASP ILE SER ASP GLY PHE PHE THR TYR ILE HIS TYR GLU SEQRES 6 A 429 GLY ILE ASN SER CYS LYS LYS SER ASP SER PHE LYS VAL SEQRES 7 A 429 LEU LEU SER HIS GLY GLU ILE VAL ASP ARG GLY ASP TYR SEQRES 8 A 429 ARG PRO SER LEU TYR LEU LEU SER SER HIS TYR HIS PRO SEQRES 9 A 429 TYR SER MET GLN VAL ILE ASN CYS VAL PRO VAL THR CYS SEQRES 10 A 429 ASN GLN SER SER PHE VAL PHE CYS HIS ILE SER ASN ASN SEQRES 11 A 429 THR LYS THR LEU ASP ASN SER ASP TYR SER SER ASP GLU SEQRES 12 A 429 TYR TYR ILE THR TYR PHE ASN GLY ILE ASP ARG PRO LYS SEQRES 13 A 429 THR LYS LYS ILE PRO ILE ASN ASN MET THR ALA ASP ASN SEQRES 14 A 429 ARG TYR ILE HIS PHE THR PHE SER GLY GLY GLY GLY VAL SEQRES 15 A 429 CYS LEU GLY GLU GLU PHE ILE ILE PRO VAL THR THR VAL SEQRES 16 A 429 ILE ASN THR ASP VAL PHE THR HIS ASP TYR CYS GLU SER SEQRES 17 A 429 PHE ASN CYS SER VAL GLN THR GLY LYS SER LEU LYS GLU SEQRES 18 A 429 ILE CYS SER GLU SER LEU ARG SER PRO THR ASN SER SER SEQRES 19 A 429 ARG TYR ASN LEU ASN GLY ILE MET ILE ILE SER GLN ASN SEQRES 20 A 429 ASN MET THR ASP PHE LYS ILE GLN LEU ASN GLY ILE THR SEQRES 21 A 429 TYR ASN LYS LEU SER PHE GLY SER PRO GLY ARG LEU SER SEQRES 22 A 429 LYS THR LEU GLY GLN VAL LEU TYR TYR GLN SER SER MET SEQRES 23 A 429 SER TRP ASP THR TYR LEU LYS ALA GLY PHE VAL GLU LYS SEQRES 24 A 429 TRP LYS PRO PHE THR PRO ASN TRP MET ASN ASN THR VAL SEQRES 25 A 429 ILE SER ARG PRO ASN GLN GLY ASN CYS PRO ARG TYR HIS SEQRES 26 A 429 LYS CYS PRO GLU ILE CYS TYR GLY GLY THR TYR ASN ASP SEQRES 27 A 429 ILE ALA PRO LEU ASP LEU GLY LYS ASP MET TYR VAL SER SEQRES 28 A 429 VAL ILE LEU ASP SER ASP GLN LEU ALA GLU ASN PRO GLU SEQRES 29 A 429 ILE THR VAL PHE ASN SER THR THR ILE LEU TYR LYS GLU SEQRES 30 A 429 ARG VAL SER LYS ASP GLU LEU ASN THR ARG SER THR THR SEQRES 31 A 429 THR SER CYS PHE LEU PHE LEU ASP GLU PRO TRP CYS ILE SEQRES 32 A 429 SER VAL LEU GLU THR ASN ARG PHE ASN GLY LYS SER ILE SEQRES 33 A 429 ARG PRO GLU ILE TYR SER TYR LYS ILE PRO LYS TYR CYS SEQRES 1 B 142 ALA LYS ASN LEU GLU PRO VAL SER TRP SER SER LEU ASN SEQRES 2 B 142 PRO LYS PHE LEU SER GLY LYS GLY LEU VAL ILE TYR PRO SEQRES 3 B 142 LYS ILE GLY ASP LYS LEU ASP ILE ILE CYS PRO ARG ALA SEQRES 4 B 142 GLU ALA GLY ARG PRO TYR GLU TYR TYR LYS LEU TYR LEU SEQRES 5 B 142 VAL ARG PRO GLU GLN ALA ALA ALA CYS SER THR VAL LEU SEQRES 6 B 142 ASP PRO ASN VAL LEU VAL THR CYS ASN LYS PRO HIS GLN SEQRES 7 B 142 GLU ILE ARG PHE THR ILE LYS PHE GLN GLU PHE SER PRO SEQRES 8 B 142 ASN TYR MET GLY LEU GLU PHE LYS LYS TYR HIS ASP TYR SEQRES 9 B 142 TYR ILE THR SER THR SER ASN GLY SER LEU GLU GLY LEU SEQRES 10 B 142 GLU ASN ARG GLU GLY GLY VAL CYS ARG THR ARG THR MET SEQRES 11 B 142 LYS ILE VAL MET LYS VAL GLY GLN ASP PRO ASN ALA SEQRES 1 C 429 ALA MET TYR SER THR ASN ALA TYR ALA GLU LEU ALA GLY SEQRES 2 C 429 PRO PRO LYS ILE PHE CYS LYS SER VAL SER LYS ASP PRO SEQRES 3 C 429 ASP PHE ARG LEU LYS GLN ILE ASP TYR VAL ILE PRO VAL SEQRES 4 C 429 GLN GLN ASP ARG SER ILE CYS MET ASN ASN PRO LEU LEU SEQRES 5 C 429 ASP ILE SER ASP GLY PHE PHE THR TYR ILE HIS TYR GLU SEQRES 6 C 429 GLY ILE ASN SER CYS LYS LYS SER ASP SER PHE LYS VAL SEQRES 7 C 429 LEU LEU SER HIS GLY GLU ILE VAL ASP ARG GLY ASP TYR SEQRES 8 C 429 ARG PRO SER LEU TYR LEU LEU SER SER HIS TYR HIS PRO SEQRES 9 C 429 TYR SER MET GLN VAL ILE ASN CYS VAL PRO VAL THR CYS SEQRES 10 C 429 ASN GLN SER SER PHE VAL PHE CYS HIS ILE SER ASN ASN SEQRES 11 C 429 THR LYS THR LEU ASP ASN SER ASP TYR SER SER ASP GLU SEQRES 12 C 429 TYR TYR ILE THR TYR PHE ASN GLY ILE ASP ARG PRO LYS SEQRES 13 C 429 THR LYS LYS ILE PRO ILE ASN ASN MET THR ALA ASP ASN SEQRES 14 C 429 ARG TYR ILE HIS PHE THR PHE SER GLY GLY GLY GLY VAL SEQRES 15 C 429 CYS LEU GLY GLU GLU PHE ILE ILE PRO VAL THR THR VAL SEQRES 16 C 429 ILE ASN THR ASP VAL PHE THR HIS ASP TYR CYS GLU SER SEQRES 17 C 429 PHE ASN CYS SER VAL GLN THR GLY LYS SER LEU LYS GLU SEQRES 18 C 429 ILE CYS SER GLU SER LEU ARG SER PRO THR ASN SER SER SEQRES 19 C 429 ARG TYR ASN LEU ASN GLY ILE MET ILE ILE SER GLN ASN SEQRES 20 C 429 ASN MET THR ASP PHE LYS ILE GLN LEU ASN GLY ILE THR SEQRES 21 C 429 TYR ASN LYS LEU SER PHE GLY SER PRO GLY ARG LEU SER SEQRES 22 C 429 LYS THR LEU GLY GLN VAL LEU TYR TYR GLN SER SER MET SEQRES 23 C 429 SER TRP ASP THR TYR LEU LYS ALA GLY PHE VAL GLU LYS SEQRES 24 C 429 TRP LYS PRO PHE THR PRO ASN TRP MET ASN ASN THR VAL SEQRES 25 C 429 ILE SER ARG PRO ASN GLN GLY ASN CYS PRO ARG TYR HIS SEQRES 26 C 429 LYS CYS PRO GLU ILE CYS TYR GLY GLY THR TYR ASN ASP SEQRES 27 C 429 ILE ALA PRO LEU ASP LEU GLY LYS ASP MET TYR VAL SER SEQRES 28 C 429 VAL ILE LEU ASP SER ASP GLN LEU ALA GLU ASN PRO GLU SEQRES 29 C 429 ILE THR VAL PHE ASN SER THR THR ILE LEU TYR LYS GLU SEQRES 30 C 429 ARG VAL SER LYS ASP GLU LEU ASN THR ARG SER THR THR SEQRES 31 C 429 THR SER CYS PHE LEU PHE LEU ASP GLU PRO TRP CYS ILE SEQRES 32 C 429 SER VAL LEU GLU THR ASN ARG PHE ASN GLY LYS SER ILE SEQRES 33 C 429 ARG PRO GLU ILE TYR SER TYR LYS ILE PRO LYS TYR CYS SEQRES 1 D 142 ALA LYS ASN LEU GLU PRO VAL SER TRP SER SER LEU ASN SEQRES 2 D 142 PRO LYS PHE LEU SER GLY LYS GLY LEU VAL ILE TYR PRO SEQRES 3 D 142 LYS ILE GLY ASP LYS LEU ASP ILE ILE CYS PRO ARG ALA SEQRES 4 D 142 GLU ALA GLY ARG PRO TYR GLU TYR TYR LYS LEU TYR LEU SEQRES 5 D 142 VAL ARG PRO GLU GLN ALA ALA ALA CYS SER THR VAL LEU SEQRES 6 D 142 ASP PRO ASN VAL LEU VAL THR CYS ASN LYS PRO HIS GLN SEQRES 7 D 142 GLU ILE ARG PHE THR ILE LYS PHE GLN GLU PHE SER PRO SEQRES 8 D 142 ASN TYR MET GLY LEU GLU PHE LYS LYS TYR HIS ASP TYR SEQRES 9 D 142 TYR ILE THR SER THR SER ASN GLY SER LEU GLU GLY LEU SEQRES 10 D 142 GLU ASN ARG GLU GLY GLY VAL CYS ARG THR ARG THR MET SEQRES 11 D 142 LYS ILE VAL MET LYS VAL GLY GLN ASP PRO ASN ALA HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET NAG A 701 14 HET NAG A 702 14 HET NAG A 705 14 HET NAG C 701 14 HET NAG C 702 14 HET NAG C 705 14 HET NAG C 706 14 HET NAG D 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE FORMUL 5 NAG 16(C8 H15 N O6) FORMUL 6 BMA C6 H12 O6 HELIX 1 AA1 TYR A 298 MET A 300 5 3 HELIX 2 AA2 HIS A 396 SER A 401 1 6 HELIX 3 AA3 SER A 411 SER A 419 1 9 HELIX 4 AA4 ARG B 82 CYS B 89 1 8 HELIX 5 AA5 GLY B 150 ARG B 154 5 5 HELIX 6 AA6 TYR C 298 MET C 300 5 3 HELIX 7 AA7 HIS C 396 SER C 401 1 6 HELIX 8 AA8 SER C 411 SER C 419 1 9 HELIX 9 AA9 ARG D 82 CYS D 89 1 8 HELIX 10 AB1 GLY D 150 ARG D 154 5 5 SHEET 1 AA1 4 LYS A 224 ILE A 226 0 SHEET 2 AA1 4 GLU A 612 LYS A 617 -1 O SER A 615 N LYS A 224 SHEET 3 AA1 4 PRO A 593 ASN A 602 -1 N CYS A 595 O TYR A 616 SHEET 4 AA1 4 ASN A 578 LEU A 588 -1 N PHE A 587 O TRP A 594 SHEET 1 AA2 4 ILE A 238 SER A 248 0 SHEET 2 AA2 4 PHE A 251 ILE A 260 -1 O TYR A 257 N ASN A 241 SHEET 3 AA2 4 LYS A 270 ASP A 280 -1 O SER A 274 N TYR A 254 SHEET 4 AA2 4 PRO A 286 TYR A 295 -1 O TYR A 289 N GLU A 277 SHEET 1 AA3 4 VAL A 302 CYS A 310 0 SHEET 2 AA3 4 SER A 313 ILE A 320 -1 O HIS A 319 N ILE A 303 SHEET 3 AA3 4 GLU A 336 PHE A 342 -1 O GLU A 336 N ILE A 320 SHEET 4 AA3 4 LYS A 349 LYS A 352 -1 O LYS A 349 N TYR A 341 SHEET 1 AA4 5 THR A 359 ALA A 360 0 SHEET 2 AA4 5 ASP A 444 GLY A 451 1 O ILE A 447 N THR A 359 SHEET 3 AA4 5 TYR A 429 ASN A 440 -1 N SER A 438 O LYS A 446 SHEET 4 AA4 5 GLU A 380 ILE A 389 -1 N ILE A 389 O TYR A 429 SHEET 5 AA4 5 HIS A 366 PHE A 369 -1 N HIS A 366 O VAL A 388 SHEET 1 AA5 5 THR A 359 ALA A 360 0 SHEET 2 AA5 5 ASP A 444 GLY A 451 1 O ILE A 447 N THR A 359 SHEET 3 AA5 5 TYR A 429 ASN A 440 -1 N SER A 438 O LYS A 446 SHEET 4 AA5 5 GLU A 380 ILE A 389 -1 N ILE A 389 O TYR A 429 SHEET 5 AA5 5 VAL A 375 LEU A 377 -1 N VAL A 375 O ILE A 382 SHEET 1 AA6 4 GLY A 463 THR A 468 0 SHEET 2 AA6 4 GLN A 471 GLN A 476 -1 O LEU A 473 N SER A 466 SHEET 3 AA6 4 ALA A 487 LYS A 492 -1 O GLY A 488 N TYR A 474 SHEET 4 AA6 4 THR A 497 TRP A 500 -1 O ASN A 499 N PHE A 489 SHEET 1 AA7 4 ILE A 532 PRO A 534 0 SHEET 2 AA7 4 TYR A 542 LEU A 547 -1 O VAL A 543 N ALA A 533 SHEET 3 AA7 4 PRO A 556 PHE A 561 -1 O THR A 559 N SER A 544 SHEET 4 AA7 4 ILE A 566 ARG A 571 -1 O TYR A 568 N VAL A 560 SHEET 1 AA8 3 VAL B 35 SER B 36 0 SHEET 2 AA8 3 LYS B 59 CYS B 64 1 O ASP B 61 N VAL B 35 SHEET 3 AA8 3 ILE B 108 LYS B 113 -1 O ILE B 112 N LEU B 60 SHEET 1 AA9 5 LEU B 50 ILE B 52 0 SHEET 2 AA9 5 LYS B 159 LYS B 163 1 O VAL B 161 N LEU B 50 SHEET 3 AA9 5 ASP B 131 THR B 135 -1 N ILE B 134 O ILE B 160 SHEET 4 AA9 5 TYR B 76 VAL B 81 -1 N TYR B 79 O THR B 135 SHEET 5 AA9 5 ASN B 96 CYS B 101 -1 O LEU B 98 N LEU B 78 SHEET 1 AB1 4 LYS C 224 ILE C 226 0 SHEET 2 AB1 4 GLU C 612 LYS C 617 -1 O SER C 615 N LYS C 224 SHEET 3 AB1 4 PRO C 593 ASN C 602 -1 N CYS C 595 O TYR C 616 SHEET 4 AB1 4 ASN C 578 LEU C 588 -1 N ASN C 578 O ASN C 602 SHEET 1 AB2 4 ILE C 238 SER C 248 0 SHEET 2 AB2 4 PHE C 251 ILE C 260 -1 O PHE C 251 N SER C 248 SHEET 3 AB2 4 LYS C 270 ASP C 280 -1 O LYS C 270 N GLU C 258 SHEET 4 AB2 4 PRO C 286 TYR C 295 -1 O TYR C 289 N GLU C 277 SHEET 1 AB3 4 VAL C 302 CYS C 310 0 SHEET 2 AB3 4 SER C 313 ILE C 320 -1 O HIS C 319 N ILE C 303 SHEET 3 AB3 4 GLU C 336 PHE C 342 -1 O GLU C 336 N ILE C 320 SHEET 4 AB3 4 LYS C 349 LYS C 352 -1 O LYS C 349 N TYR C 341 SHEET 1 AB4 5 THR C 359 ALA C 360 0 SHEET 2 AB4 5 ASP C 444 GLY C 451 1 O ILE C 447 N THR C 359 SHEET 3 AB4 5 TYR C 429 ASN C 440 -1 N SER C 438 O LYS C 446 SHEET 4 AB4 5 GLU C 380 ILE C 389 -1 N ILE C 389 O TYR C 429 SHEET 5 AB4 5 HIS C 366 PHE C 369 -1 N HIS C 366 O VAL C 388 SHEET 1 AB5 5 THR C 359 ALA C 360 0 SHEET 2 AB5 5 ASP C 444 GLY C 451 1 O ILE C 447 N THR C 359 SHEET 3 AB5 5 TYR C 429 ASN C 440 -1 N SER C 438 O LYS C 446 SHEET 4 AB5 5 GLU C 380 ILE C 389 -1 N ILE C 389 O TYR C 429 SHEET 5 AB5 5 VAL C 375 LEU C 377 -1 N VAL C 375 O ILE C 382 SHEET 1 AB6 4 GLY C 463 THR C 468 0 SHEET 2 AB6 4 GLN C 471 GLN C 476 -1 O LEU C 473 N SER C 466 SHEET 3 AB6 4 LYS C 486 LYS C 492 -1 O GLY C 488 N TYR C 474 SHEET 4 AB6 4 THR C 497 PRO C 498 -1 O THR C 497 N LYS C 492 SHEET 1 AB7 4 ILE C 532 PRO C 534 0 SHEET 2 AB7 4 TYR C 542 LEU C 547 -1 O VAL C 543 N ALA C 533 SHEET 3 AB7 4 PRO C 556 PHE C 561 -1 O GLU C 557 N ILE C 546 SHEET 4 AB7 4 ILE C 566 ARG C 571 -1 O GLU C 570 N ILE C 558 SHEET 1 AB8 3 VAL D 35 SER D 36 0 SHEET 2 AB8 3 ASP D 61 CYS D 64 1 O ASP D 61 N VAL D 35 SHEET 3 AB8 3 ILE D 108 THR D 111 -1 O PHE D 110 N ILE D 62 SHEET 1 AB9 5 LEU D 50 ILE D 52 0 SHEET 2 AB9 5 LYS D 159 LYS D 163 1 O VAL D 161 N LEU D 50 SHEET 3 AB9 5 ASP D 131 SER D 136 -1 N ILE D 134 O ILE D 160 SHEET 4 AB9 5 TYR D 76 VAL D 81 -1 N VAL D 81 O TYR D 133 SHEET 5 AB9 5 VAL D 97 CYS D 101 -1 O LEU D 98 N LEU D 78 SSBOND 1 CYS A 212 CYS A 622 1555 1555 2.04 SSBOND 2 CYS A 239 CYS A 263 1555 1555 2.05 SSBOND 3 CYS A 305 CYS A 318 1555 1555 2.07 SSBOND 4 CYS A 310 CYS A 376 1555 1555 2.04 SSBOND 5 CYS A 399 CYS A 416 1555 1555 2.03 SSBOND 6 CYS A 404 CYS A 520 1555 1555 2.04 SSBOND 7 CYS A 514 CYS A 524 1555 1555 2.04 SSBOND 8 CYS A 586 CYS A 595 1555 1555 2.03 SSBOND 9 CYS B 64 CYS B 101 1555 1555 2.02 SSBOND 10 CYS B 89 CYS B 153 1555 1555 2.04 SSBOND 11 CYS C 212 CYS C 622 1555 1555 2.04 SSBOND 12 CYS C 239 CYS C 263 1555 1555 2.06 SSBOND 13 CYS C 305 CYS C 318 1555 1555 2.04 SSBOND 14 CYS C 310 CYS C 376 1555 1555 2.04 SSBOND 15 CYS C 399 CYS C 416 1555 1555 2.03 SSBOND 16 CYS C 404 CYS C 520 1555 1555 2.05 SSBOND 17 CYS C 514 CYS C 524 1555 1555 2.04 SSBOND 18 CYS C 586 CYS C 595 1555 1555 2.03 SSBOND 19 CYS D 64 CYS D 101 1555 1555 2.04 SSBOND 20 CYS D 89 CYS D 153 1555 1555 2.03 LINK ND2 ASN A 311 C1 NAG A 701 1555 1555 1.44 LINK ND2 ASN A 322 C1 NAG A 702 1555 1555 1.44 LINK ND2 ASN A 425 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 502 C1 NAG A 705 1555 1555 1.45 LINK ND2 ASN A 562 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN B 139 C1 NAG G 1 1555 1555 1.46 LINK ND2 ASN C 311 C1 NAG C 701 1555 1555 1.44 LINK ND2 ASN C 322 C1 NAG C 702 1555 1555 1.46 LINK ND2 ASN C 425 C1 NAG H 1 1555 1555 1.46 LINK ND2 ASN C 502 C1 NAG C 705 1555 1555 1.44 LINK ND2 ASN C 562 C1 NAG C 706 1555 1555 1.44 LINK ND2 ASN D 139 C1 NAG D 201 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.45 CISPEP 1 LYS A 494 PRO A 495 0 -1.74 CISPEP 2 LYS C 494 PRO C 495 0 1.52 CRYST1 207.570 207.570 119.377 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004818 0.002781 0.000000 0.00000 SCALE2 0.000000 0.005563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008377 0.00000