HEADER TRANSFERASE/TRANSFERASE INHIBITOR 06-JUN-19 6P7Z TITLE CO-CRYSTAL STRUCTURE OF HUMAN SMYD3 WITH ISOXAZOLE AMIDES INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SET AND MYND DOMAIN-CONTAINING PROTEIN 3,ZINC FINGER MYND COMPND 5 DOMAIN-CONTAINING PROTEIN 1; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD3, ZMYND1, ZNFN3A1; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS KEYWDS METHYLTRANSFERASE, ONCOLOGY, INHIBITOR, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.ELKINS,W.G.BONNETTE REVDAT 3 13-MAR-24 6P7Z 1 LINK REVDAT 2 11-MAR-20 6P7Z 1 JRNL REVDAT 1 15-JAN-20 6P7Z 0 JRNL AUTH D.S.SU,J.QU,M.SCHULZ,C.W.BLACKLEDGE,H.YU,J.ZENG,J.BURGESS, JRNL AUTH 2 A.REIF,M.STERN,R.NAGARAJAN,M.B.PAPPALARDI,K.WONG,A.P.GRAVES, JRNL AUTH 3 W.BONNETTE,L.WANG,P.ELKINS,B.KNAPP-REED,J.D.CARSON,C.MCHUGH, JRNL AUTH 4 H.MOHAMMAD,R.KRUGER,J.LUENGO,D.A.HEERDING,C.L.CREASY JRNL TITL DISCOVERY OF ISOXAZOLE AMIDES AS POTENT AND SELECTIVE SMYD3 JRNL TITL 2 INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 11 133 2020 JRNL REFN ISSN 1948-5875 JRNL PMID 32071679 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00493 REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 138727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6320 - 3.6956 0.95 4485 252 0.1543 0.1792 REMARK 3 2 3.6956 - 2.9340 0.99 4504 234 0.1644 0.1714 REMARK 3 3 2.9340 - 2.5633 0.99 4473 232 0.1815 0.2202 REMARK 3 4 2.5633 - 2.3290 0.99 4495 212 0.1724 0.1704 REMARK 3 5 2.3290 - 2.1621 0.99 4397 267 0.1714 0.1831 REMARK 3 6 2.1621 - 2.0347 0.99 4409 245 0.1705 0.1874 REMARK 3 7 2.0347 - 1.9328 0.99 4415 221 0.1776 0.1986 REMARK 3 8 1.9328 - 1.8487 0.99 4372 247 0.1795 0.2142 REMARK 3 9 1.8487 - 1.7775 0.99 4392 223 0.1772 0.1925 REMARK 3 10 1.7775 - 1.7162 0.99 4379 232 0.1726 0.2051 REMARK 3 11 1.7162 - 1.6625 0.99 4337 247 0.1742 0.1784 REMARK 3 12 1.6625 - 1.6150 0.99 4351 227 0.1743 0.1962 REMARK 3 13 1.6150 - 1.5725 0.99 4385 220 0.1698 0.2021 REMARK 3 14 1.5725 - 1.5341 0.99 4371 239 0.1777 0.1825 REMARK 3 15 1.5341 - 1.4992 0.99 4381 242 0.1827 0.1760 REMARK 3 16 1.4992 - 1.4673 1.00 4380 236 0.1873 0.2096 REMARK 3 17 1.4673 - 1.4380 1.00 4424 211 0.1963 0.2059 REMARK 3 18 1.4380 - 1.4108 1.00 4378 254 0.1976 0.2224 REMARK 3 19 1.4108 - 1.3857 1.00 4364 226 0.2009 0.2348 REMARK 3 20 1.3857 - 1.3622 1.00 4410 220 0.2041 0.2244 REMARK 3 21 1.3622 - 1.3402 1.00 4402 245 0.2089 0.2256 REMARK 3 22 1.3402 - 1.3196 1.00 4425 219 0.2072 0.2151 REMARK 3 23 1.3196 - 1.3002 1.00 4332 220 0.2165 0.2117 REMARK 3 24 1.3002 - 1.2818 1.00 4450 217 0.2216 0.2349 REMARK 3 25 1.2818 - 1.2645 1.00 4345 235 0.2218 0.2489 REMARK 3 26 1.2645 - 1.2481 1.00 4319 257 0.2355 0.2500 REMARK 3 27 1.2481 - 1.2325 1.00 4422 232 0.2313 0.2347 REMARK 3 28 1.2325 - 1.2177 1.00 4357 230 0.2372 0.2936 REMARK 3 29 1.2177 - 1.2035 1.00 4399 200 0.2513 0.2400 REMARK 3 30 1.2035 - 1.1900 0.96 4207 225 0.2619 0.2748 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.023 -3.180 -4.522 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.0895 REMARK 3 T33: 0.0928 T12: 0.0055 REMARK 3 T13: 0.0191 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.3850 L22: 0.4839 REMARK 3 L33: 1.1194 L12: 0.0531 REMARK 3 L13: -0.1177 L23: -0.0548 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.0712 S13: 0.0281 REMARK 3 S21: 0.1465 S22: 0.0358 S23: 0.0467 REMARK 3 S31: -0.0957 S32: 0.0990 S33: -0.0374 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 95:186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.663 -17.561 -5.274 REMARK 3 T TENSOR REMARK 3 T11: 0.0810 T22: 0.0987 REMARK 3 T33: 0.0763 T12: 0.0044 REMARK 3 T13: 0.0092 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.5748 L22: 0.6836 REMARK 3 L33: 0.6376 L12: -0.3000 REMARK 3 L13: -0.1235 L23: 0.1730 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: -0.1016 S13: -0.0167 REMARK 3 S21: 0.1357 S22: 0.0547 S23: 0.0132 REMARK 3 S31: 0.0702 S32: 0.0018 S33: -0.0130 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 187:427 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.528 7.712 -18.917 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.0606 REMARK 3 T33: 0.0628 T12: -0.0015 REMARK 3 T13: 0.0111 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.4823 L22: 0.5846 REMARK 3 L33: 0.3630 L12: 0.3391 REMARK 3 L13: -0.2291 L23: -0.1878 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: -0.0350 S13: 0.0681 REMARK 3 S21: 0.0839 S22: -0.0246 S23: 0.0392 REMARK 3 S31: -0.1021 S32: 0.0200 S33: -0.0264 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138790 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP, ROOM TEMP, RESERVOIR IS REMARK 280 20%PEG 3350, 0.2M MGOAC PROTEIN AT 5MG/ML RATIO TO RESERVOIR IS REMARK 280 1:1, SEED SOAKING: 0.1UL OF 200MM COMPOUND IN DMSO ADDED TO DROP REMARK 280 FOR 72 HOURS BEFORE HARVEST, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.57000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.66500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.08950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.66500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.57000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.08950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PHE A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 94 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 42 CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 74 CE NZ REMARK 470 LYS A 77 CE NZ REMARK 470 LYS A 78 CD CE NZ REMARK 470 LYS A 84 CE NZ REMARK 470 LYS A 88 CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 CYS A 93 SG REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 161 CG OD1 OD2 REMARK 470 LYS A 391 CE NZ REMARK 470 ARG A 426 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 16.18 -145.57 REMARK 500 TYR A 124 137.88 -170.69 REMARK 500 LYS A 271 -6.69 78.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1146 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1147 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1148 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1149 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1150 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 CYS A 52 SG 106.4 REMARK 620 3 CYS A 71 SG 113.9 107.6 REMARK 620 4 CYS A 75 SG 108.8 114.9 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 62 SG REMARK 620 2 CYS A 65 SG 111.5 REMARK 620 3 HIS A 83 NE2 112.6 102.1 REMARK 620 4 CYS A 87 SG 109.7 113.9 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 CYS A 261 SG 107.8 REMARK 620 3 CYS A 263 SG 106.7 111.3 REMARK 620 4 CYS A 266 SG 101.2 116.3 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 771 O REMARK 620 2 HOH A 804 O 88.7 REMARK 620 3 HOH A 843 O 87.8 93.2 REMARK 620 4 HOH A 865 O 173.6 87.7 87.2 REMARK 620 5 HOH A1080 O 89.3 177.8 87.7 94.4 REMARK 620 6 HOH A1087 O 90.4 89.7 176.6 94.9 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 697 O REMARK 620 2 HOH A 722 O 87.9 REMARK 620 3 HOH A 733 O 174.7 89.3 REMARK 620 4 HOH A 762 O 91.8 93.4 92.9 REMARK 620 5 HOH A 781 O 94.0 177.1 88.6 88.8 REMARK 620 6 HOH A 975 O 83.6 89.8 91.8 174.4 88.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O41 A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6P6G RELATED DB: PDB REMARK 900 RELATED ID: 6P6K RELATED DB: PDB DBREF 6P7Z A 1 428 UNP Q9H7B4 SMYD3_HUMAN 1 428 SEQADV 6P7Z GLY A -3 UNP Q9H7B4 EXPRESSION TAG SEQADV 6P7Z SER A -2 UNP Q9H7B4 EXPRESSION TAG SEQADV 6P7Z PHE A -1 UNP Q9H7B4 EXPRESSION TAG SEQADV 6P7Z THR A 0 UNP Q9H7B4 EXPRESSION TAG SEQADV 6P7Z ASN A 13 UNP Q9H7B4 LYS 13 CONFLICT SEQRES 1 A 432 GLY SER PHE THR MET GLU PRO LEU LYS VAL GLU LYS PHE SEQRES 2 A 432 ALA THR ALA ASN ARG GLY ASN GLY LEU ARG ALA VAL THR SEQRES 3 A 432 PRO LEU ARG PRO GLY GLU LEU LEU PHE ARG SER ASP PRO SEQRES 4 A 432 LEU ALA TYR THR VAL CYS LYS GLY SER ARG GLY VAL VAL SEQRES 5 A 432 CYS ASP ARG CYS LEU LEU GLY LYS GLU LYS LEU MET ARG SEQRES 6 A 432 CYS SER GLN CYS ARG VAL ALA LYS TYR CYS SER ALA LYS SEQRES 7 A 432 CYS GLN LYS LYS ALA TRP PRO ASP HIS LYS ARG GLU CYS SEQRES 8 A 432 LYS CYS LEU LYS SER CYS LYS PRO ARG TYR PRO PRO ASP SEQRES 9 A 432 SER VAL ARG LEU LEU GLY ARG VAL VAL PHE LYS LEU MET SEQRES 10 A 432 ASP GLY ALA PRO SER GLU SER GLU LYS LEU TYR SER PHE SEQRES 11 A 432 TYR ASP LEU GLU SER ASN ILE ASN LYS LEU THR GLU ASP SEQRES 12 A 432 LYS LYS GLU GLY LEU ARG GLN LEU VAL MET THR PHE GLN SEQRES 13 A 432 HIS PHE MET ARG GLU GLU ILE GLN ASP ALA SER GLN LEU SEQRES 14 A 432 PRO PRO ALA PHE ASP LEU PHE GLU ALA PHE ALA LYS VAL SEQRES 15 A 432 ILE CYS ASN SER PHE THR ILE CYS ASN ALA GLU MET GLN SEQRES 16 A 432 GLU VAL GLY VAL GLY LEU TYR PRO SER ILE SER LEU LEU SEQRES 17 A 432 ASN HIS SER CYS ASP PRO ASN CYS SER ILE VAL PHE ASN SEQRES 18 A 432 GLY PRO HIS LEU LEU LEU ARG ALA VAL ARG ASP ILE GLU SEQRES 19 A 432 VAL GLY GLU GLU LEU THR ILE CYS TYR LEU ASP MET LEU SEQRES 20 A 432 MET THR SER GLU GLU ARG ARG LYS GLN LEU ARG ASP GLN SEQRES 21 A 432 TYR CYS PHE GLU CYS ASP CYS PHE ARG CYS GLN THR GLN SEQRES 22 A 432 ASP LYS ASP ALA ASP MET LEU THR GLY ASP GLU GLN VAL SEQRES 23 A 432 TRP LYS GLU VAL GLN GLU SER LEU LYS LYS ILE GLU GLU SEQRES 24 A 432 LEU LYS ALA HIS TRP LYS TRP GLU GLN VAL LEU ALA MET SEQRES 25 A 432 CYS GLN ALA ILE ILE SER SER ASN SER GLU ARG LEU PRO SEQRES 26 A 432 ASP ILE ASN ILE TYR GLN LEU LYS VAL LEU ASP CYS ALA SEQRES 27 A 432 MET ASP ALA CYS ILE ASN LEU GLY LEU LEU GLU GLU ALA SEQRES 28 A 432 LEU PHE TYR GLY THR ARG THR MET GLU PRO TYR ARG ILE SEQRES 29 A 432 PHE PHE PRO GLY SER HIS PRO VAL ARG GLY VAL GLN VAL SEQRES 30 A 432 MET LYS VAL GLY LYS LEU GLN LEU HIS GLN GLY MET PHE SEQRES 31 A 432 PRO GLN ALA MET LYS ASN LEU ARG LEU ALA PHE ASP ILE SEQRES 32 A 432 MET ARG VAL THR HIS GLY ARG GLU HIS SER LEU ILE GLU SEQRES 33 A 432 ASP LEU ILE LEU LEU LEU GLU GLU CYS ASP ALA ASN ILE SEQRES 34 A 432 ARG ALA SER HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET MG A 504 1 HET MG A 505 1 HET SAM A 506 27 HET O41 A 507 21 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM SAM S-ADENOSYLMETHIONINE HETNAM O41 5-CYCLOPROPYL-N-[1-(METHYLSULFONYL)PIPERIDIN-4-YL]-1,2- HETNAM 2 O41 OXAZOLE-3-CARBOXAMIDE FORMUL 2 ZN 3(ZN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 7 SAM C15 H22 N6 O5 S FORMUL 8 O41 C13 H19 N3 O4 S FORMUL 9 HOH *550(H2 O) HELIX 1 AA1 LYS A 42 ARG A 45 5 4 HELIX 2 AA2 SER A 72 CYS A 93 1 22 HELIX 3 AA3 PRO A 99 GLY A 115 1 17 HELIX 4 AA4 SER A 118 LYS A 122 5 5 HELIX 5 AA5 SER A 125 LEU A 129 5 5 HELIX 6 AA6 ASN A 132 LEU A 136 5 5 HELIX 7 AA7 THR A 137 MET A 155 1 19 HELIX 8 AA8 ASP A 161 LEU A 165 5 5 HELIX 9 AA9 ASP A 170 SER A 182 1 13 HELIX 10 AB1 SER A 200 LEU A 204 5 5 HELIX 11 AB2 THR A 245 CYS A 258 1 14 HELIX 12 AB3 CYS A 263 GLN A 269 1 7 HELIX 13 AB4 LYS A 271 LEU A 276 1 6 HELIX 14 AB5 ASP A 279 HIS A 299 1 21 HELIX 15 AB6 LYS A 301 SER A 314 1 14 HELIX 16 AB7 ASN A 324 GLY A 342 1 19 HELIX 17 AB8 LEU A 343 PHE A 362 1 20 HELIX 18 AB9 HIS A 366 GLN A 383 1 18 HELIX 19 AC1 MET A 385 HIS A 404 1 20 HELIX 20 AC2 HIS A 408 ALA A 427 1 20 SHEET 1 AA1 4 VAL A 6 ALA A 10 0 SHEET 2 AA1 4 ASN A 16 ALA A 20 -1 O GLY A 17 N PHE A 9 SHEET 3 AA1 4 GLU A 234 ILE A 237 -1 O LEU A 235 N LEU A 18 SHEET 4 AA1 4 ASN A 205 HIS A 206 1 N ASN A 205 O ILE A 237 SHEET 1 AA2 3 LEU A 29 SER A 33 0 SHEET 2 AA2 3 HIS A 220 ALA A 225 -1 O LEU A 223 N LEU A 30 SHEET 3 AA2 3 CYS A 212 ASN A 217 -1 N ASN A 217 O HIS A 220 SHEET 1 AA3 3 ALA A 37 VAL A 40 0 SHEET 2 AA3 3 GLU A 192 LEU A 197 -1 O VAL A 195 N THR A 39 SHEET 3 AA3 3 PHE A 183 CYS A 186 -1 N ILE A 185 O VAL A 193 SHEET 1 AA4 2 MET A 60 ARG A 61 0 SHEET 2 AA4 2 LYS A 69 TYR A 70 -1 O TYR A 70 N MET A 60 LINK SG CYS A 49 ZN ZN A 503 1555 1555 2.33 LINK SG CYS A 52 ZN ZN A 503 1555 1555 2.28 LINK SG CYS A 62 ZN ZN A 502 1555 1555 2.32 LINK SG CYS A 65 ZN ZN A 502 1555 1555 2.33 LINK SG CYS A 71 ZN ZN A 503 1555 1555 2.32 LINK SG CYS A 75 ZN ZN A 503 1555 1555 2.30 LINK NE2 HIS A 83 ZN ZN A 502 1555 1555 2.02 LINK SG CYS A 87 ZN ZN A 502 1555 1555 2.31 LINK SG CYS A 208 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 261 ZN ZN A 501 1555 1555 2.32 LINK SG CYS A 263 ZN ZN A 501 1555 1555 2.29 LINK SG CYS A 266 ZN ZN A 501 1555 1555 2.34 LINK MG MG A 504 O HOH A 771 1555 1545 2.04 LINK MG MG A 504 O HOH A 804 1555 1555 2.01 LINK MG MG A 504 O HOH A 843 1555 1555 2.07 LINK MG MG A 504 O HOH A 865 1555 1555 2.18 LINK MG MG A 504 O HOH A1080 1555 1555 2.08 LINK MG MG A 504 O HOH A1087 1555 1545 2.08 LINK MG MG A 505 O HOH A 697 1555 1555 2.04 LINK MG MG A 505 O HOH A 722 1555 3644 2.04 LINK MG MG A 505 O HOH A 733 1555 1555 2.05 LINK MG MG A 505 O HOH A 762 1555 1545 2.07 LINK MG MG A 505 O HOH A 781 1555 1555 2.09 LINK MG MG A 505 O HOH A 975 1555 3644 2.14 SITE 1 AC1 4 CYS A 208 CYS A 261 CYS A 263 CYS A 266 SITE 1 AC2 4 CYS A 62 CYS A 65 HIS A 83 CYS A 87 SITE 1 AC3 4 CYS A 49 CYS A 52 CYS A 71 CYS A 75 SITE 1 AC4 6 HOH A 771 HOH A 804 HOH A 843 HOH A 865 SITE 2 AC4 6 HOH A1080 HOH A1087 SITE 1 AC5 6 HOH A 697 HOH A 722 HOH A 733 HOH A 762 SITE 2 AC5 6 HOH A 781 HOH A 975 SITE 1 AC6 23 ARG A 14 ASN A 16 TYR A 124 GLU A 130 SITE 2 AC6 23 ASN A 132 CYS A 180 ASN A 181 SER A 202 SITE 3 AC6 23 LEU A 203 LEU A 204 ASN A 205 HIS A 206 SITE 4 AC6 23 TYR A 239 TYR A 257 PHE A 259 O41 A 507 SITE 5 AC6 23 HOH A 667 HOH A 699 HOH A 755 HOH A 776 SITE 6 AC6 23 HOH A 792 HOH A 833 HOH A 862 SITE 1 AC7 17 CYS A 180 ASN A 181 SER A 182 PHE A 183 SITE 2 AC7 17 THR A 184 ILE A 237 TYR A 239 TYR A 257 SITE 3 AC7 17 HIS A 366 VAL A 368 SAM A 506 HOH A 692 SITE 4 AC7 17 HOH A 710 HOH A 718 HOH A 730 HOH A 803 SITE 5 AC7 17 HOH A 925 CRYST1 61.140 66.179 107.330 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016356 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009317 0.00000