HEADER OXIDOREDUCTASE 06-JUN-19 6P8C TITLE 2,5-DIAMINO-6-(RIBOSYLAMINO)-4(3H)-PYRIMIDINONE 5'-PHOSPHATE REDUCTASE TITLE 2 (MTHRED) FROM METHANOTHERMOBACTER THERMAUTOTROPHICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,5-DIAMINO-6-RIBOSYLAMINO-4(3H)-PYRIMIDINONE 5'-PHOSPHATE COMPND 3 REDUCTASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: DARP REDUCTASE,2,5-DIAMINO-6-(5-PHOSPHO-D-RIBOSYLAMINO) COMPND 6 PYRIMIDIN-4(3H)-ONE REDUCTASE,5-DIAMINO-6-RIBITYLAMINO-4(3H)- COMPND 7 PYRIMIDINONE 5'-PHOSPHATE SYNTHASE,DARIPP SYNTHASE; COMPND 8 EC: 1.1.1.302; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS (STRAIN SOURCE 3 ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / DELTA H); SOURCE 4 ORGANISM_TAXID: 187420; SOURCE 5 STRAIN: ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / DELTA H; SOURCE 6 GENE: MTH_235; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIBOFLAVIN, COFACTOR, METHANOTHERMOBACTER THERMAUTOTROPHICUS., KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CARBONE,L.R.SCHOFIELD,I.HANNUS,A.J.SUTHERLAND-SMITH,R.S.RONIMUS REVDAT 2 11-OCT-23 6P8C 1 LINK REVDAT 1 10-JUN-20 6P8C 0 JRNL AUTH V.CARBONE,L.R.SCHOFIELD,I.HANNUS,A.J.SUTHERLAND-SMITH, JRNL AUTH 2 R.S.RONIMUS JRNL TITL THE CRYSTAL STRUCTURE OF JRNL TITL 2 2,5-DIAMINO-6-(RIBOSYLAMINO)-4(3H)-PYRIMIDINONE 5'-PHOSPHATE JRNL TITL 3 REDUCTASE (MTHRED) FROM METHANOTHERMOBACTER JRNL TITL 4 THERMAUTOTROPHICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1724 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: UTILIZED TLS REFINEMENT FOR FINAL CYCLE REMARK 4 REMARK 4 6P8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34024 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 68.698 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : 0.68400 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 2AZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 10% (W/V) REMARK 280 PEG 8000, 0.1 M NA-CACODYLATE PH 6.8, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.46050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.50650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.79850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.50650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.46050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.79850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 GLY A -25 REMARK 465 LYS A -24 REMARK 465 PRO A -23 REMARK 465 ILE A -22 REMARK 465 PRO A -21 REMARK 465 ASN A -20 REMARK 465 PRO A -19 REMARK 465 LEU A -18 REMARK 465 LEU A -17 REMARK 465 GLY A -16 REMARK 465 LEU A -15 REMARK 465 ASP A -14 REMARK 465 SER A -13 REMARK 465 THR A -12 REMARK 465 GLU A -11 REMARK 465 ASN A -10 REMARK 465 LEU A -9 REMARK 465 TYR A -8 REMARK 465 PHE A -7 REMARK 465 GLN A -6 REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 PHE A -1 REMARK 465 THR A 0 REMARK 465 MET B -32 REMARK 465 HIS B -31 REMARK 465 HIS B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 GLY B -25 REMARK 465 LYS B -24 REMARK 465 PRO B -23 REMARK 465 ILE B -22 REMARK 465 PRO B -21 REMARK 465 ASN B -20 REMARK 465 PRO B -19 REMARK 465 LEU B -18 REMARK 465 LEU B -17 REMARK 465 GLY B -16 REMARK 465 LEU B -15 REMARK 465 ASP B -14 REMARK 465 SER B -13 REMARK 465 THR B -12 REMARK 465 GLU B -11 REMARK 465 ASN B -10 REMARK 465 LEU B -9 REMARK 465 TYR B -8 REMARK 465 PHE B -7 REMARK 465 GLN B -6 REMARK 465 GLY B -5 REMARK 465 ILE B -4 REMARK 465 ASP B -3 REMARK 465 PRO B -2 REMARK 465 PHE B -1 REMARK 465 THR B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 18 145.16 -170.28 REMARK 500 SER A 24 28.70 -143.28 REMARK 500 ILE A 26 -56.30 -122.95 REMARK 500 HIS A 62 -2.66 -145.59 REMARK 500 ASP A 78 78.86 -152.78 REMARK 500 ASN A 91 -169.18 -75.89 REMARK 500 ASP A 183 -119.80 -104.03 REMARK 500 SER B 24 24.97 -142.41 REMARK 500 ILE B 26 -53.46 -124.36 REMARK 500 HIS B 62 -0.68 -144.57 REMARK 500 ALA B 121 114.80 -165.69 REMARK 500 ASP B 183 -123.09 -107.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 176 O REMARK 620 2 HOH A 447 O 105.8 REMARK 620 3 HOH A 464 O 74.4 91.8 REMARK 620 4 ARG B 176 O 97.7 77.9 165.1 REMARK 620 5 HOH B 414 O 169.9 71.0 114.9 72.3 REMARK 620 6 HOH B 433 O 79.8 174.4 89.6 101.7 103.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 302 DBREF 6P8C A 1 216 UNP O26337 RIB7_METTH 1 216 DBREF 6P8C B 1 216 UNP O26337 RIB7_METTH 1 216 SEQADV 6P8C MET A -32 UNP O26337 INITIATING METHIONINE SEQADV 6P8C HIS A -31 UNP O26337 EXPRESSION TAG SEQADV 6P8C HIS A -30 UNP O26337 EXPRESSION TAG SEQADV 6P8C HIS A -29 UNP O26337 EXPRESSION TAG SEQADV 6P8C HIS A -28 UNP O26337 EXPRESSION TAG SEQADV 6P8C HIS A -27 UNP O26337 EXPRESSION TAG SEQADV 6P8C HIS A -26 UNP O26337 EXPRESSION TAG SEQADV 6P8C GLY A -25 UNP O26337 EXPRESSION TAG SEQADV 6P8C LYS A -24 UNP O26337 EXPRESSION TAG SEQADV 6P8C PRO A -23 UNP O26337 EXPRESSION TAG SEQADV 6P8C ILE A -22 UNP O26337 EXPRESSION TAG SEQADV 6P8C PRO A -21 UNP O26337 EXPRESSION TAG SEQADV 6P8C ASN A -20 UNP O26337 EXPRESSION TAG SEQADV 6P8C PRO A -19 UNP O26337 EXPRESSION TAG SEQADV 6P8C LEU A -18 UNP O26337 EXPRESSION TAG SEQADV 6P8C LEU A -17 UNP O26337 EXPRESSION TAG SEQADV 6P8C GLY A -16 UNP O26337 EXPRESSION TAG SEQADV 6P8C LEU A -15 UNP O26337 EXPRESSION TAG SEQADV 6P8C ASP A -14 UNP O26337 EXPRESSION TAG SEQADV 6P8C SER A -13 UNP O26337 EXPRESSION TAG SEQADV 6P8C THR A -12 UNP O26337 EXPRESSION TAG SEQADV 6P8C GLU A -11 UNP O26337 EXPRESSION TAG SEQADV 6P8C ASN A -10 UNP O26337 EXPRESSION TAG SEQADV 6P8C LEU A -9 UNP O26337 EXPRESSION TAG SEQADV 6P8C TYR A -8 UNP O26337 EXPRESSION TAG SEQADV 6P8C PHE A -7 UNP O26337 EXPRESSION TAG SEQADV 6P8C GLN A -6 UNP O26337 EXPRESSION TAG SEQADV 6P8C GLY A -5 UNP O26337 EXPRESSION TAG SEQADV 6P8C ILE A -4 UNP O26337 EXPRESSION TAG SEQADV 6P8C ASP A -3 UNP O26337 EXPRESSION TAG SEQADV 6P8C PRO A -2 UNP O26337 EXPRESSION TAG SEQADV 6P8C PHE A -1 UNP O26337 EXPRESSION TAG SEQADV 6P8C THR A 0 UNP O26337 EXPRESSION TAG SEQADV 6P8C MET B -32 UNP O26337 INITIATING METHIONINE SEQADV 6P8C HIS B -31 UNP O26337 EXPRESSION TAG SEQADV 6P8C HIS B -30 UNP O26337 EXPRESSION TAG SEQADV 6P8C HIS B -29 UNP O26337 EXPRESSION TAG SEQADV 6P8C HIS B -28 UNP O26337 EXPRESSION TAG SEQADV 6P8C HIS B -27 UNP O26337 EXPRESSION TAG SEQADV 6P8C HIS B -26 UNP O26337 EXPRESSION TAG SEQADV 6P8C GLY B -25 UNP O26337 EXPRESSION TAG SEQADV 6P8C LYS B -24 UNP O26337 EXPRESSION TAG SEQADV 6P8C PRO B -23 UNP O26337 EXPRESSION TAG SEQADV 6P8C ILE B -22 UNP O26337 EXPRESSION TAG SEQADV 6P8C PRO B -21 UNP O26337 EXPRESSION TAG SEQADV 6P8C ASN B -20 UNP O26337 EXPRESSION TAG SEQADV 6P8C PRO B -19 UNP O26337 EXPRESSION TAG SEQADV 6P8C LEU B -18 UNP O26337 EXPRESSION TAG SEQADV 6P8C LEU B -17 UNP O26337 EXPRESSION TAG SEQADV 6P8C GLY B -16 UNP O26337 EXPRESSION TAG SEQADV 6P8C LEU B -15 UNP O26337 EXPRESSION TAG SEQADV 6P8C ASP B -14 UNP O26337 EXPRESSION TAG SEQADV 6P8C SER B -13 UNP O26337 EXPRESSION TAG SEQADV 6P8C THR B -12 UNP O26337 EXPRESSION TAG SEQADV 6P8C GLU B -11 UNP O26337 EXPRESSION TAG SEQADV 6P8C ASN B -10 UNP O26337 EXPRESSION TAG SEQADV 6P8C LEU B -9 UNP O26337 EXPRESSION TAG SEQADV 6P8C TYR B -8 UNP O26337 EXPRESSION TAG SEQADV 6P8C PHE B -7 UNP O26337 EXPRESSION TAG SEQADV 6P8C GLN B -6 UNP O26337 EXPRESSION TAG SEQADV 6P8C GLY B -5 UNP O26337 EXPRESSION TAG SEQADV 6P8C ILE B -4 UNP O26337 EXPRESSION TAG SEQADV 6P8C ASP B -3 UNP O26337 EXPRESSION TAG SEQADV 6P8C PRO B -2 UNP O26337 EXPRESSION TAG SEQADV 6P8C PHE B -1 UNP O26337 EXPRESSION TAG SEQADV 6P8C THR B 0 UNP O26337 EXPRESSION TAG SEQRES 1 A 249 MET HIS HIS HIS HIS HIS HIS GLY LYS PRO ILE PRO ASN SEQRES 2 A 249 PRO LEU LEU GLY LEU ASP SER THR GLU ASN LEU TYR PHE SEQRES 3 A 249 GLN GLY ILE ASP PRO PHE THR MET ARG PRO TYR VAL ILE SEQRES 4 A 249 LEU ASN ALA ALA MET THR LEU ASP GLY LYS ILE ALA THR SEQRES 5 A 249 ALA THR GLY SER SER GLU ILE SER GLY GLU GLU ASP LEU SEQRES 6 A 249 ARG ARG VAL HIS GLU LEU ARG ARG GLU CYS ASP ALA ILE SEQRES 7 A 249 MET VAL GLY ILE ASN THR VAL LEU ALA ASP ASP PRO ARG SEQRES 8 A 249 LEU THR VAL HIS ARG VAL ASP ALA ALA PRO GLY ASP ASN SEQRES 9 A 249 PRO VAL ARG VAL VAL VAL ASP SER MET ALA ARG THR PRO SEQRES 10 A 249 PRO HIS PHE ARG VAL LEU ASN ASP GLU ALA PRO THR VAL SEQRES 11 A 249 ILE GLY VAL SER GLU SER ALA PRO PRO GLU ARG VAL ALA SEQRES 12 A 249 GLU LEU ARG LYS ARG ALA GLU VAL VAL VAL ALA GLY THR SEQRES 13 A 249 ARG ARG VAL ASP LEU HIS LEU LEU LEU GLU ARG LEU HIS SEQRES 14 A 249 GLY MET GLY ILE GLU ARG LEU MET LEU GLU GLY GLY SER SEQRES 15 A 249 THR LEU ASN TYR SER MET LEU THR GLY GLY LEU VAL ASP SEQRES 16 A 249 GLU VAL ARG VAL CYS ILE ALA PRO MET ILE VAL GLY GLY SEQRES 17 A 249 ARG ASP ALA ARG THR LEU VAL ASP GLY GLU GLY ILE ASP SEQRES 18 A 249 GLU MET ALA ASP ALA ILE ARG LEU GLU LEU LYS ARG SER SEQRES 19 A 249 TYR THR LEU GLY GLU ASP LEU ILE VAL GLU TYR THR VAL SEQRES 20 A 249 LYS GLY SEQRES 1 B 249 MET HIS HIS HIS HIS HIS HIS GLY LYS PRO ILE PRO ASN SEQRES 2 B 249 PRO LEU LEU GLY LEU ASP SER THR GLU ASN LEU TYR PHE SEQRES 3 B 249 GLN GLY ILE ASP PRO PHE THR MET ARG PRO TYR VAL ILE SEQRES 4 B 249 LEU ASN ALA ALA MET THR LEU ASP GLY LYS ILE ALA THR SEQRES 5 B 249 ALA THR GLY SER SER GLU ILE SER GLY GLU GLU ASP LEU SEQRES 6 B 249 ARG ARG VAL HIS GLU LEU ARG ARG GLU CYS ASP ALA ILE SEQRES 7 B 249 MET VAL GLY ILE ASN THR VAL LEU ALA ASP ASP PRO ARG SEQRES 8 B 249 LEU THR VAL HIS ARG VAL ASP ALA ALA PRO GLY ASP ASN SEQRES 9 B 249 PRO VAL ARG VAL VAL VAL ASP SER MET ALA ARG THR PRO SEQRES 10 B 249 PRO HIS PHE ARG VAL LEU ASN ASP GLU ALA PRO THR VAL SEQRES 11 B 249 ILE GLY VAL SER GLU SER ALA PRO PRO GLU ARG VAL ALA SEQRES 12 B 249 GLU LEU ARG LYS ARG ALA GLU VAL VAL VAL ALA GLY THR SEQRES 13 B 249 ARG ARG VAL ASP LEU HIS LEU LEU LEU GLU ARG LEU HIS SEQRES 14 B 249 GLY MET GLY ILE GLU ARG LEU MET LEU GLU GLY GLY SER SEQRES 15 B 249 THR LEU ASN TYR SER MET LEU THR GLY GLY LEU VAL ASP SEQRES 16 B 249 GLU VAL ARG VAL CYS ILE ALA PRO MET ILE VAL GLY GLY SEQRES 17 B 249 ARG ASP ALA ARG THR LEU VAL ASP GLY GLU GLY ILE ASP SEQRES 18 B 249 GLU MET ALA ASP ALA ILE ARG LEU GLU LEU LYS ARG SER SEQRES 19 B 249 TYR THR LEU GLY GLU ASP LEU ILE VAL GLU TYR THR VAL SEQRES 20 B 249 LYS GLY HET CL A 301 1 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 12 HET GOL A 305 6 HET MG A 306 1 HET NAP A 307 48 HET CL B 301 1 HET NAP B 302 48 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 CL 2(CL 1-) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 8 MG MG 2+ FORMUL 9 NAP 2(C21 H28 N7 O17 P3) FORMUL 12 HOH *266(H2 O) HELIX 1 AA1 GLY A 28 GLU A 41 1 14 HELIX 2 AA2 ILE A 49 ASP A 56 1 8 HELIX 3 AA3 ALA A 67 ASN A 71 5 5 HELIX 4 AA4 PHE A 87 ASN A 91 5 5 HELIX 5 AA5 PRO A 105 ARG A 113 1 9 HELIX 6 AA6 ASP A 127 GLY A 137 1 11 HELIX 7 AA7 GLY A 148 GLY A 158 1 11 HELIX 8 AA8 GLU A 189 ALA A 193 5 5 HELIX 9 AA9 GLY B 28 GLU B 41 1 14 HELIX 10 AB1 ILE B 49 ASP B 56 1 8 HELIX 11 AB2 PHE B 87 ASN B 91 5 5 HELIX 12 AB3 PRO B 105 ARG B 113 1 9 HELIX 13 AB4 ASP B 127 GLY B 137 1 11 HELIX 14 AB5 GLY B 148 GLY B 158 1 11 HELIX 15 AB6 GLU B 189 ALA B 193 5 5 SHEET 1 AA110 GLU A 117 VAL A 120 0 SHEET 2 AA110 THR A 96 VAL A 100 1 N ILE A 98 O GLU A 117 SHEET 3 AA110 VAL A 73 VAL A 77 1 N ARG A 74 O VAL A 97 SHEET 4 AA110 ALA A 44 GLY A 48 1 N ILE A 45 O VAL A 75 SHEET 5 AA110 ARG A 142 LEU A 145 1 O MET A 144 N MET A 46 SHEET 6 AA110 TYR A 4 THR A 12 1 N TYR A 4 O LEU A 143 SHEET 7 AA110 GLU A 163 ALA A 169 1 O ARG A 165 N LEU A 7 SHEET 8 AA110 ASP A 207 GLY A 216 -1 O LEU A 208 N ILE A 168 SHEET 9 AA110 ILE A 194 LEU A 204 -1 N TYR A 202 O ILE A 209 SHEET 10 AA110 MET B 171 ILE B 172 -1 O ILE B 172 N ILE A 194 SHEET 1 AA2 2 LYS A 16 ALA A 18 0 SHEET 2 AA2 2 ARG A 179 THR A 180 -1 O ARG A 179 N ILE A 17 SHEET 1 AA310 MET A 171 ILE A 172 0 SHEET 2 AA310 ILE B 194 LEU B 204 -1 O ILE B 194 N ILE A 172 SHEET 3 AA310 ASP B 207 VAL B 214 -1 O GLU B 211 N LYS B 199 SHEET 4 AA310 GLU B 163 ALA B 169 -1 N ILE B 168 O LEU B 208 SHEET 5 AA310 TYR B 4 THR B 12 1 N MET B 11 O CYS B 167 SHEET 6 AA310 ARG B 142 LEU B 145 1 O LEU B 143 N TYR B 4 SHEET 7 AA310 ALA B 44 GLY B 48 1 N ALA B 44 O MET B 144 SHEET 8 AA310 VAL B 73 VAL B 77 1 O VAL B 75 N ILE B 45 SHEET 9 AA310 THR B 96 VAL B 100 1 O VAL B 97 N ARG B 74 SHEET 10 AA310 GLU B 117 VAL B 120 1 O VAL B 119 N VAL B 100 SHEET 1 AA4 2 LYS B 16 ALA B 18 0 SHEET 2 AA4 2 ARG B 179 THR B 180 -1 O ARG B 179 N ILE B 17 LINK O ARG A 176 MG MG A 306 1555 1555 2.98 LINK MG MG A 306 O HOH A 447 1555 1555 2.62 LINK MG MG A 306 O HOH A 464 1555 1555 2.39 LINK MG MG A 306 O ARG B 176 1555 1555 2.98 LINK MG MG A 306 O HOH B 414 1555 1555 2.39 LINK MG MG A 306 O HOH B 433 1555 1555 2.49 CISPEP 1 GLY A 147 GLY A 148 0 3.77 CISPEP 2 GLY B 147 GLY B 148 0 2.77 SITE 1 AC1 5 ARG A 39 ARG A 58 LEU A 59 HIS A 62 SITE 2 AC1 5 HOH A 489 SITE 1 AC2 4 GLU A 30 HIS A 136 GLU A 141 GLY A 205 SITE 1 AC3 6 ARG A 40 CYS A 42 ASP A 43 GLY A 69 SITE 2 AC3 6 ASP A 70 PRO A 72 SITE 1 AC4 7 ARG A 34 PRO A 95 THR A 96 VAL A 97 SITE 2 AC4 7 GLU A 117 ARG A 200 GLU A 211 SITE 1 AC5 5 ILE A 6 GLU A 117 GLU A 163 ARG A 165 SITE 2 AC5 5 HOH A 458 SITE 1 AC6 6 ARG A 176 HOH A 447 HOH A 464 ARG B 176 SITE 2 AC6 6 HOH B 414 HOH B 433 SITE 1 AC7 25 ALA A 9 ALA A 10 ILE A 17 GLY A 48 SITE 2 AC7 25 ILE A 49 ASN A 50 THR A 51 ASP A 55 SITE 3 AC7 25 VAL A 77 SER A 79 ARG A 82 ARG A 125 SITE 4 AC7 25 VAL A 126 LEU A 128 GLU A 146 GLY A 148 SITE 5 AC7 25 SER A 149 THR A 150 LEU A 151 SER A 154 SITE 6 AC7 25 ARG A 179 HOH A 408 HOH A 436 HOH A 450 SITE 7 AC7 25 HOH A 484 SITE 1 AC8 4 ARG B 39 ARG B 58 LEU B 59 HOH B 474 SITE 1 AC9 23 ALA B 9 ALA B 10 ILE B 17 GLY B 48 SITE 2 AC9 23 ILE B 49 ASN B 50 THR B 51 ASP B 55 SITE 3 AC9 23 VAL B 77 SER B 79 ARG B 82 ARG B 125 SITE 4 AC9 23 VAL B 126 LEU B 128 GLU B 146 GLY B 148 SITE 5 AC9 23 SER B 149 THR B 150 LEU B 151 SER B 154 SITE 6 AC9 23 ARG B 179 HOH B 423 HOH B 431 CRYST1 56.921 89.597 107.013 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017568 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009345 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.123043 0.006945 -0.992377 133.26685 1 MTRIX2 2 0.000161 -0.999976 -0.006979 37.00426 1 MTRIX3 2 -0.992401 0.000699 -0.123041 150.92151 1