HEADER TRANSFERASE 10-JUN-19 6P9K TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS KASA IN COMPLEX WITH TITLE 2 O6G COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-ACP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.41; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: KASA_2, KASA, KASA_1, ERS007663_00367, ERS007672_01613, SOURCE 5 ERS007679_01974, ERS007681_02066, ERS007688_01478, ERS007703_02203, SOURCE 6 ERS007722_03184, ERS007741_02349, ERS023446_01403, ERS024276_01522, SOURCE 7 ERS027644_00736, ERS027646_00897, ERS027651_00106, ERS027652_01351, SOURCE 8 ERS027656_00221, ERS027659_01260, ERS027666_02494, ERS031537_00603, SOURCE 9 ERS124361_03146, SAMEA2683035_01249; SOURCE 10 EXPRESSION_SYSTEM: MYCOBACTERIUM SMEGMATIS STR. MC2 155; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 246196 KEYWDS BETA KETOACYL SYNTHASE I, LIPID SYNTHESIS, FATTY ACID BIOSYNTHESIS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.C.CAPODAGLI,M.B.NEIDITCH REVDAT 3 11-OCT-23 6P9K 1 REMARK REVDAT 2 03-JUN-20 6P9K 1 JRNL REVDAT 1 01-APR-20 6P9K 0 JRNL AUTH D.INOYAMA,D.AWASTHI,G.C.CAPODAGLI,K.TSOTETSI,P.SUKHEJA, JRNL AUTH 2 M.ZIMMERMAN,S.G.LI,R.JADHAV,R.RUSSO,X.WANG,C.GRADY, JRNL AUTH 3 T.RICHMANN,R.SHRESTHA,L.LI,Y.M.AHN,H.P.HO LIANG,M.MINA, JRNL AUTH 4 S.PARK,D.S.PERLIN,N.CONNELL,V.DARTOIS,D.ALLAND,M.B.NEIDITCH, JRNL AUTH 5 P.KUMAR,J.S.FREUNDLICH JRNL TITL A PRECLINICAL CANDIDATE TARGETING MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 KASA. JRNL REF CELL CHEM BIOL V. 27 560 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32197094 JRNL DOI 10.1016/J.CHEMBIOL.2020.02.007 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.560 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2626 - 4.1024 1.00 4088 152 0.1369 0.1450 REMARK 3 2 4.1024 - 3.2567 1.00 3935 146 0.1349 0.1650 REMARK 3 3 3.2567 - 2.8451 1.00 3911 145 0.1531 0.1882 REMARK 3 4 2.8451 - 2.5851 1.00 3850 139 0.1568 0.1749 REMARK 3 5 2.5851 - 2.3998 1.00 3869 142 0.1505 0.1846 REMARK 3 6 2.3998 - 2.2583 1.00 3833 138 0.1533 0.2129 REMARK 3 7 2.2583 - 2.1452 1.00 3829 144 0.1408 0.1615 REMARK 3 8 2.1452 - 2.0519 1.00 3841 142 0.1431 0.1801 REMARK 3 9 2.0519 - 1.9729 1.00 3808 142 0.1405 0.1551 REMARK 3 10 1.9729 - 1.9048 1.00 3833 142 0.1502 0.1806 REMARK 3 11 1.9048 - 1.8452 1.00 3780 142 0.1510 0.1793 REMARK 3 12 1.8452 - 1.7925 1.00 3810 143 0.1460 0.1763 REMARK 3 13 1.7925 - 1.7453 1.00 3827 138 0.1539 0.1658 REMARK 3 14 1.7453 - 1.7027 0.99 3783 138 0.1641 0.1992 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2007 16.4700 -11.0488 REMARK 3 T TENSOR REMARK 3 T11: 0.3356 T22: 0.1590 REMARK 3 T33: 0.2285 T12: -0.0448 REMARK 3 T13: -0.0247 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.2808 L22: 2.1560 REMARK 3 L33: 1.3651 L12: 0.0563 REMARK 3 L13: -0.5755 L23: 0.4316 REMARK 3 S TENSOR REMARK 3 S11: 0.1803 S12: -0.0517 S13: 0.2527 REMARK 3 S21: 0.1269 S22: -0.1549 S23: -0.0582 REMARK 3 S31: -0.2478 S32: -0.0443 S33: -0.0419 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.2337 16.9087 -20.1026 REMARK 3 T TENSOR REMARK 3 T11: 0.3588 T22: 0.2801 REMARK 3 T33: 0.3135 T12: 0.0770 REMARK 3 T13: -0.0037 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.9285 L22: 2.8042 REMARK 3 L33: 4.4082 L12: 0.6288 REMARK 3 L13: -0.5925 L23: -0.3072 REMARK 3 S TENSOR REMARK 3 S11: 0.1608 S12: 0.2309 S13: 0.1501 REMARK 3 S21: -0.1782 S22: -0.2177 S23: 0.3996 REMARK 3 S31: -0.4837 S32: -0.3996 S33: 0.0453 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.4451 16.3594 -26.8400 REMARK 3 T TENSOR REMARK 3 T11: 0.3917 T22: 0.1757 REMARK 3 T33: 0.2512 T12: 0.0239 REMARK 3 T13: 0.0549 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 2.4100 L22: 0.8706 REMARK 3 L33: 1.3853 L12: -0.0820 REMARK 3 L13: -0.9074 L23: 0.2530 REMARK 3 S TENSOR REMARK 3 S11: 0.2608 S12: 0.1491 S13: 0.2174 REMARK 3 S21: -0.2519 S22: -0.1997 S23: -0.2344 REMARK 3 S31: -0.4217 S32: -0.0014 S33: -0.0638 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.6680 4.4954 -33.1647 REMARK 3 T TENSOR REMARK 3 T11: 0.3736 T22: 0.3115 REMARK 3 T33: 0.4502 T12: 0.0735 REMARK 3 T13: 0.0217 T23: -0.0710 REMARK 3 L TENSOR REMARK 3 L11: 3.3083 L22: 1.3970 REMARK 3 L33: 2.9615 L12: 1.0252 REMARK 3 L13: 1.6908 L23: 1.4228 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: -0.1197 S13: 0.1739 REMARK 3 S21: 0.0030 S22: -0.2307 S23: 0.5914 REMARK 3 S31: -0.0427 S32: -0.4892 S33: 0.2466 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7881 6.7405 -13.8464 REMARK 3 T TENSOR REMARK 3 T11: 0.2859 T22: 0.1494 REMARK 3 T33: 0.2237 T12: -0.0601 REMARK 3 T13: -0.0310 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.9315 L22: 1.7636 REMARK 3 L33: 1.0696 L12: -0.1881 REMARK 3 L13: 0.0426 L23: 0.3619 REMARK 3 S TENSOR REMARK 3 S11: 0.1746 S12: -0.0959 S13: 0.0458 REMARK 3 S21: 0.1789 S22: -0.1417 S23: -0.1948 REMARK 3 S31: -0.0342 S32: 0.0245 S33: -0.0306 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1663 9.4993 -2.1916 REMARK 3 T TENSOR REMARK 3 T11: 0.4298 T22: 0.2218 REMARK 3 T33: 0.2813 T12: -0.1260 REMARK 3 T13: -0.0959 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.9805 L22: 1.7124 REMARK 3 L33: 1.2144 L12: -0.1014 REMARK 3 L13: -0.0117 L23: 0.6654 REMARK 3 S TENSOR REMARK 3 S11: 0.1712 S12: -0.2397 S13: -0.0095 REMARK 3 S21: 0.5028 S22: -0.1011 S23: -0.3178 REMARK 3 S31: 0.0499 S32: 0.0728 S33: -0.0608 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000239415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88557 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56051 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5W2O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM NACL, 6% ISOPROPANOL, 1MM TRIS(2 REMARK 280 -CARBOXYETHYL)PHOSPHINE HYDROCHLORIDE (TCEP HCL), PH 9.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.38900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.77800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.77800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.38900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -48.38900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 717 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 747 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 116 -58.99 -140.46 REMARK 500 SER A 169 41.44 -153.87 REMARK 500 SER A 169 41.44 -151.77 REMARK 500 ALA A 170 -126.36 51.25 REMARK 500 ASP A 235 33.82 -144.74 REMARK 500 VAL A 278 -34.12 -131.24 REMARK 500 ILE A 347 -113.79 52.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 886 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 887 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 309 O REMARK 620 2 ASN A 309 OD1 81.2 REMARK 620 3 ALA A 310 O 79.8 90.7 REMARK 620 4 GLU A 354 OE1 170.9 99.5 91.1 REMARK 620 5 ASN A 399 OD1 81.2 84.6 160.9 107.9 REMARK 620 6 ASN A 400 O 87.4 165.0 96.8 93.4 84.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O6G A 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W2O RELATED DB: PDB REMARK 900 5W2O IS THE APO FORM REMARK 900 RELATED ID: 5W2P RELATED DB: PDB REMARK 900 5W2P IS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT LIGAND REMARK 900 RELATED ID: 5W2Q RELATED DB: PDB REMARK 900 5W2Q IS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT LIGAND REMARK 900 RELATED ID: 5W2S RELATED DB: PDB REMARK 900 5W2S IS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT LIGAND DBREF1 6P9K A 3 416 UNP A0A045JQD6_MYCTX DBREF2 6P9K A A0A045JQD6 3 416 SEQRES 1 A 414 GLN PRO SER THR ALA ASN GLY GLY PHE PRO SER VAL VAL SEQRES 2 A 414 VAL THR ALA VAL THR ALA THR THR SER ILE SER PRO ASP SEQRES 3 A 414 ILE GLU SER THR TRP LYS GLY LEU LEU ALA GLY GLU SER SEQRES 4 A 414 GLY ILE HIS ALA LEU GLU ASP GLU PHE VAL THR LYS TRP SEQRES 5 A 414 ASP LEU ALA VAL LYS ILE GLY GLY HIS LEU LYS ASP PRO SEQRES 6 A 414 VAL ASP SER HIS MET GLY ARG LEU ASP MET ARG ARG MET SEQRES 7 A 414 SER TYR VAL GLN ARG MET GLY LYS LEU LEU GLY GLY GLN SEQRES 8 A 414 LEU TRP GLU SER ALA GLY SER PRO GLU VAL ASP PRO ASP SEQRES 9 A 414 ARG PHE ALA VAL VAL VAL GLY THR GLY LEU GLY GLY ALA SEQRES 10 A 414 GLU ARG ILE VAL GLU SER TYR ASP LEU MET ASN ALA GLY SEQRES 11 A 414 GLY PRO ARG LYS VAL SER PRO LEU ALA VAL GLN MET ILE SEQRES 12 A 414 MET PRO ASN GLY ALA ALA ALA VAL ILE GLY LEU GLN LEU SEQRES 13 A 414 GLY ALA ARG ALA GLY VAL MET THR PRO VAL SER ALA CYS SEQRES 14 A 414 SER SER GLY SER GLU ALA ILE ALA HIS ALA TRP ARG GLN SEQRES 15 A 414 ILE VAL MET GLY ASP ALA ASP VAL ALA VAL CYS GLY GLY SEQRES 16 A 414 VAL GLU GLY PRO ILE GLU ALA LEU PRO ILE ALA ALA PHE SEQRES 17 A 414 SER MET MET ARG ALA MET SER THR ARG ASN ASP GLU PRO SEQRES 18 A 414 GLU ARG ALA SER ARG PRO PHE ASP LYS ASP ARG ASP GLY SEQRES 19 A 414 PHE VAL PHE GLY GLU ALA GLY ALA LEU MET LEU ILE GLU SEQRES 20 A 414 THR GLU GLU HIS ALA LYS ALA ARG GLY ALA LYS PRO LEU SEQRES 21 A 414 ALA ARG LEU LEU GLY ALA GLY ILE THR SER ASP ALA PHE SEQRES 22 A 414 HIS MET VAL ALA PRO ALA ALA ASP GLY VAL ARG ALA GLY SEQRES 23 A 414 ARG ALA MET THR ARG SER LEU GLU LEU ALA GLY LEU SER SEQRES 24 A 414 PRO ALA ASP ILE ASP HIS VAL ASN ALA HIS GLY THR ALA SEQRES 25 A 414 THR PRO ILE GLY ASP ALA ALA GLU ALA ASN ALA ILE ARG SEQRES 26 A 414 VAL ALA GLY CYS ASP GLN ALA ALA VAL TYR ALA PRO LYS SEQRES 27 A 414 SER ALA LEU GLY HIS SER ILE GLY ALA VAL GLY ALA LEU SEQRES 28 A 414 GLU SER VAL LEU THR VAL LEU THR LEU ARG ASP GLY VAL SEQRES 29 A 414 ILE PRO PRO THR LEU ASN TYR GLU THR PRO ASP PRO GLU SEQRES 30 A 414 ILE ASP LEU ASP VAL VAL ALA GLY GLU PRO ARG TYR GLY SEQRES 31 A 414 ASP TYR ARG TYR ALA VAL ASN ASN SER PHE GLY PHE GLY SEQRES 32 A 414 GLY HIS ASN VAL ALA LEU ALA PHE GLY ARG TYR HET NA A 501 1 HET IPA A 502 4 HET IPA A 503 4 HET IPA A 504 4 HET IPA A 505 4 HET IPA A 506 4 HET GOL A 507 6 HET O6G A 508 20 HETNAM NA SODIUM ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM GOL GLYCEROL HETNAM O6G N-(2-CYANO-3-METHYL-1H-INDOL-5-YL)BUTANE-1-SULFONAMIDE HETSYN IPA 2-PROPANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA NA 1+ FORMUL 3 IPA 5(C3 H8 O) FORMUL 8 GOL C3 H8 O3 FORMUL 9 O6G C14 H17 N3 O2 S FORMUL 10 HOH *287(H2 O) HELIX 1 AA1 ASP A 28 ALA A 38 1 11 HELIX 2 AA2 ASP A 48 ASP A 55 1 8 HELIX 3 AA3 PRO A 67 MET A 72 5 6 HELIX 4 AA4 GLY A 73 MET A 80 1 8 HELIX 5 AA5 SER A 81 ALA A 98 1 18 HELIX 6 AA6 ASP A 104 ASP A 106 5 3 HELIX 7 AA7 ALA A 119 GLY A 133 1 15 HELIX 8 AA8 PRO A 134 VAL A 137 5 4 HELIX 9 AA9 LEU A 140 MET A 146 1 7 HELIX 10 AB1 ASN A 148 GLY A 159 1 12 HELIX 11 AB2 SER A 169 CYS A 171 5 3 HELIX 12 AB3 SER A 172 MET A 187 1 16 HELIX 13 AB4 GLU A 203 MET A 212 1 10 HELIX 14 AB5 GLU A 222 ALA A 226 5 5 HELIX 15 AB6 GLU A 251 ARG A 257 1 7 HELIX 16 AB7 GLY A 284 GLY A 299 1 16 HELIX 17 AB8 SER A 301 ILE A 305 5 5 HELIX 18 AB9 THR A 315 ALA A 329 1 15 HELIX 19 AC1 PRO A 339 GLY A 344 1 6 HELIX 20 AC2 SER A 346 GLY A 348 5 3 HELIX 21 AC3 ALA A 349 GLY A 365 1 17 SHEET 1 AA111 VAL A 164 MET A 165 0 SHEET 2 AA111 PHE A 108 THR A 114 1 N VAL A 110 O MET A 165 SHEET 3 AA111 VAL A 192 VAL A 198 1 O GLY A 196 N GLY A 113 SHEET 4 AA111 ALA A 242 THR A 250 -1 O ILE A 248 N ALA A 193 SHEET 5 AA111 VAL A 14 THR A 23 -1 N VAL A 15 O GLU A 249 SHEET 6 AA111 ALA A 263 SER A 272 -1 O ALA A 263 N VAL A 16 SHEET 7 AA111 HIS A 407 GLY A 414 -1 O GLY A 414 N ARG A 264 SHEET 8 AA111 TYR A 396 GLY A 403 -1 N ALA A 397 O PHE A 413 SHEET 9 AA111 HIS A 307 ASN A 309 1 N ASN A 309 O ASN A 400 SHEET 10 AA111 ALA A 335 TYR A 337 1 O ALA A 335 N VAL A 308 SHEET 11 AA111 ASP A 383 VAL A 384 1 O ASP A 383 N VAL A 336 SHEET 1 AA2 2 HIS A 44 ALA A 45 0 SHEET 2 AA2 2 ILE A 60 GLY A 61 -1 O GLY A 61 N HIS A 44 SHEET 1 AA3 2 VAL A 366 ILE A 367 0 SHEET 2 AA3 2 ARG A 390 TYR A 391 -1 O ARG A 390 N ILE A 367 LINK O ASN A 309 NA NA A 501 1555 1555 2.58 LINK OD1 ASN A 309 NA NA A 501 1555 1555 2.32 LINK O ALA A 310 NA NA A 501 1555 1555 2.51 LINK OE1 GLU A 354 NA NA A 501 1555 1555 2.33 LINK OD1 ASN A 399 NA NA A 501 1555 1555 2.39 LINK O ASN A 400 NA NA A 501 1555 1555 2.93 SITE 1 AC1 5 ASN A 309 ALA A 310 GLU A 354 ASN A 399 SITE 2 AC1 5 ASN A 400 SITE 1 AC2 5 VAL A 278 ILE A 317 TYR A 391 PHE A 404 SITE 2 AC2 5 HOH A 727 SITE 1 AC3 3 GLY A 115 LEU A 116 MET A 146 SITE 1 AC4 3 ASP A 69 TYR A 82 HOH A 770 SITE 1 AC5 5 ARG A 78 ASP A 332 ASP A 381 LEU A 382 SITE 2 AC5 5 ASP A 383 SITE 1 AC6 5 ALA A 282 ASP A 283 ASN A 324 HOH A 697 SITE 2 AC6 5 HOH A 772 SITE 1 AC7 3 ALA A 18 VAL A 19 GLU A 30 SITE 1 AC8 8 GLY A 117 GLU A 120 GLU A 199 GLY A 200 SITE 2 AC8 8 PRO A 201 GLU A 203 PRO A 206 ILE A 347 CRYST1 77.505 77.505 145.167 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012902 0.007449 0.000000 0.00000 SCALE2 0.000000 0.014898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006889 0.00000