HEADER OXIDOREDUCTASE/INHIBITOR 18-JUN-19 6PD7 TITLE CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH PURIFIED MORPHOLINE TITLE 2 CARBOXYLIC ACID 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: B0013 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, DSBA, OXIDOREDUCTASE- KEYWDS 2 INHIBITOR COMPLEX, REFILX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.BENTLEY,B.DOAK,M.J.SCANLON REVDAT 3 11-OCT-23 6PD7 1 REMARK REVDAT 2 11-NOV-20 6PD7 1 JRNL REVDAT 1 06-MAY-20 6PD7 0 JRNL AUTH M.R.BENTLEY,O.V.ILYICHOVA,G.WANG,M.L.WILLIAMS,G.SHARMA, JRNL AUTH 2 W.S.ALWAN,R.L.WHITEHOUSE,B.MOHANTY,P.J.SCAMMELLS,B.HERAS, JRNL AUTH 3 J.L.MARTIN,M.TOTSIKA,B.CAPUANO,B.C.DOAK,M.J.SCANLON JRNL TITL RAPID ELABORATION OF FRAGMENTS INTO LEADS BY X-RAY JRNL TITL 2 CRYSTALLOGRAPHIC SCREENING OF PARALLEL CHEMICAL LIBRARIES JRNL TITL 3 (REFIL X ). JRNL REF J.MED.CHEM. V. 63 6863 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32529824 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00111 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3211 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2000 - 4.5200 1.00 2708 170 0.1456 0.1506 REMARK 3 2 4.5200 - 3.5800 1.00 2680 122 0.1524 0.2162 REMARK 3 3 3.5800 - 3.1300 1.00 2648 147 0.1874 0.2248 REMARK 3 4 3.1300 - 2.8500 1.00 2629 147 0.1964 0.2396 REMARK 3 5 2.8500 - 2.6400 1.00 2644 138 0.2086 0.2628 REMARK 3 6 2.6400 - 2.4900 1.00 2597 137 0.1970 0.2724 REMARK 3 7 2.4900 - 2.3600 1.00 2633 155 0.2059 0.2776 REMARK 3 8 2.3600 - 2.2600 1.00 2610 146 0.2143 0.2602 REMARK 3 9 2.2600 - 2.1700 1.00 2620 130 0.2191 0.2875 REMARK 3 10 2.1700 - 2.1000 1.00 2611 134 0.2200 0.2793 REMARK 3 11 2.1000 - 2.0300 1.00 2613 130 0.2425 0.3062 REMARK 3 12 2.0300 - 1.9700 1.00 2640 130 0.2658 0.3203 REMARK 3 13 1.9700 - 1.9200 0.95 2455 150 0.3175 0.3931 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.088 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3054 REMARK 3 ANGLE : 0.779 4158 REMARK 3 CHIRALITY : 0.045 453 REMARK 3 PLANARITY : 0.004 548 REMARK 3 DIHEDRAL : 5.404 2434 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5283 -10.2064 9.7198 REMARK 3 T TENSOR REMARK 3 T11: 0.6103 T22: 0.5639 REMARK 3 T33: 0.6006 T12: 0.2091 REMARK 3 T13: -0.0371 T23: -0.1572 REMARK 3 L TENSOR REMARK 3 L11: 5.7085 L22: 6.6949 REMARK 3 L33: 2.2005 L12: 0.8598 REMARK 3 L13: 2.7730 L23: -1.9396 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: 0.6676 S13: -0.7323 REMARK 3 S21: -0.2002 S22: 0.2054 S23: -0.8963 REMARK 3 S31: 1.0319 S32: 0.3752 S33: -0.1394 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5359 6.6023 16.8544 REMARK 3 T TENSOR REMARK 3 T11: 0.3348 T22: 0.3514 REMARK 3 T33: 0.3311 T12: 0.1319 REMARK 3 T13: 0.0197 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.6290 L22: 2.7407 REMARK 3 L33: 2.0486 L12: 0.5724 REMARK 3 L13: 0.1681 L23: 0.4574 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: 0.0987 S13: -0.2641 REMARK 3 S21: 0.2381 S22: 0.0586 S23: 0.0011 REMARK 3 S31: 0.2367 S32: -0.0990 S33: 0.0048 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4038 8.5292 10.8308 REMARK 3 T TENSOR REMARK 3 T11: 0.2534 T22: 0.4385 REMARK 3 T33: 0.3156 T12: 0.1004 REMARK 3 T13: -0.0128 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 3.2063 L22: 2.5062 REMARK 3 L33: 3.3204 L12: -0.0865 REMARK 3 L13: -0.8593 L23: 0.5352 REMARK 3 S TENSOR REMARK 3 S11: -0.1279 S12: 0.5867 S13: -0.0793 REMARK 3 S21: -0.1119 S22: 0.0355 S23: 0.1518 REMARK 3 S31: 0.0357 S32: -0.4277 S33: 0.0958 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8001 23.6143 20.7688 REMARK 3 T TENSOR REMARK 3 T11: 0.3303 T22: 0.3002 REMARK 3 T33: 0.3079 T12: 0.1608 REMARK 3 T13: 0.0110 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 1.7465 L22: 1.3889 REMARK 3 L33: 0.9217 L12: -0.2251 REMARK 3 L13: -0.3457 L23: 0.3738 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.0101 S13: 0.1625 REMARK 3 S21: 0.0337 S22: 0.0051 S23: -0.0176 REMARK 3 S31: -0.1340 S32: -0.1220 S33: -0.0409 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5492 9.0777 23.2085 REMARK 3 T TENSOR REMARK 3 T11: 0.2755 T22: 0.2893 REMARK 3 T33: 0.3469 T12: 0.0120 REMARK 3 T13: 0.0664 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.7136 L22: 2.5590 REMARK 3 L33: 3.2895 L12: -3.0640 REMARK 3 L13: 0.4713 L23: -0.6644 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: 0.2872 S13: -0.2761 REMARK 3 S21: 0.2133 S22: -0.2608 S23: 0.6747 REMARK 3 S31: 0.0592 S32: -0.5266 S33: 0.1892 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0042 -1.0229 17.7451 REMARK 3 T TENSOR REMARK 3 T11: 0.3778 T22: 0.3723 REMARK 3 T33: 0.4285 T12: 0.1081 REMARK 3 T13: 0.0352 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 4.5836 L22: 3.5682 REMARK 3 L33: 3.7336 L12: 1.9893 REMARK 3 L13: 1.7050 L23: 2.1200 REMARK 3 S TENSOR REMARK 3 S11: -0.2559 S12: -0.0719 S13: -0.5229 REMARK 3 S21: 0.3292 S22: 0.1727 S23: -0.0358 REMARK 3 S31: 0.4893 S32: 0.0434 S33: 0.0727 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4641 -0.9961 7.0108 REMARK 3 T TENSOR REMARK 3 T11: 0.3788 T22: 0.4280 REMARK 3 T33: 0.4375 T12: 0.1359 REMARK 3 T13: -0.0306 T23: -0.1396 REMARK 3 L TENSOR REMARK 3 L11: 5.2538 L22: 1.8471 REMARK 3 L33: 0.7523 L12: 2.8924 REMARK 3 L13: -0.5706 L23: -0.7256 REMARK 3 S TENSOR REMARK 3 S11: -0.1931 S12: 0.5170 S13: -0.8102 REMARK 3 S21: 0.0749 S22: 0.3346 S23: -0.4219 REMARK 3 S31: 0.2315 S32: 0.0823 S33: -0.1202 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1403 18.1407 41.4748 REMARK 3 T TENSOR REMARK 3 T11: 0.3724 T22: 0.4354 REMARK 3 T33: 0.2291 T12: -0.0156 REMARK 3 T13: -0.0212 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 6.6987 L22: 6.3697 REMARK 3 L33: 4.9267 L12: -1.3416 REMARK 3 L13: -1.5737 L23: -0.8546 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: -0.5596 S13: 0.1998 REMARK 3 S21: 0.7016 S22: -0.1351 S23: -0.1874 REMARK 3 S31: -0.2062 S32: 0.5394 S33: 0.1143 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4920 20.3732 23.8280 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.3834 REMARK 3 T33: 0.2383 T12: 0.0527 REMARK 3 T13: 0.0217 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.3019 L22: 3.5409 REMARK 3 L33: 2.2602 L12: -0.7210 REMARK 3 L13: -0.1671 L23: 0.5245 REMARK 3 S TENSOR REMARK 3 S11: 0.1039 S12: 0.0837 S13: 0.0873 REMARK 3 S21: -0.1401 S22: -0.1202 S23: 0.0239 REMARK 3 S31: -0.0534 S32: 0.3293 S33: 0.0209 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.3634 12.8179 9.8070 REMARK 3 T TENSOR REMARK 3 T11: 0.2862 T22: 0.3936 REMARK 3 T33: 0.2594 T12: 0.0860 REMARK 3 T13: -0.0027 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.6407 L22: 1.6513 REMARK 3 L33: 2.4456 L12: 0.3724 REMARK 3 L13: -0.0251 L23: 0.3531 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: 0.3406 S13: -0.0805 REMARK 3 S21: -0.0644 S22: 0.0970 S23: -0.0344 REMARK 3 S31: -0.0342 S32: 0.2239 S33: -0.0413 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.3335 10.0350 29.5766 REMARK 3 T TENSOR REMARK 3 T11: 0.2924 T22: 0.3416 REMARK 3 T33: 0.2617 T12: 0.1044 REMARK 3 T13: 0.0004 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 2.7628 L22: 2.6477 REMARK 3 L33: 2.5872 L12: -1.5404 REMARK 3 L13: -1.9398 L23: 1.6279 REMARK 3 S TENSOR REMARK 3 S11: -0.1238 S12: -0.3487 S13: -0.3248 REMARK 3 S21: 0.3985 S22: 0.0461 S23: 0.0954 REMARK 3 S31: 0.3046 S32: 0.4487 S33: 0.0945 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9819 28.5657 33.5747 REMARK 3 T TENSOR REMARK 3 T11: 0.5721 T22: 0.5914 REMARK 3 T33: 0.5353 T12: 0.2119 REMARK 3 T13: 0.0115 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 2.1518 L22: 2.6771 REMARK 3 L33: 4.8039 L12: 2.0592 REMARK 3 L13: -1.7061 L23: -3.1938 REMARK 3 S TENSOR REMARK 3 S11: 0.0770 S12: 0.1130 S13: 0.9424 REMARK 3 S21: 0.1514 S22: 0.1730 S23: 0.5729 REMARK 3 S31: -0.4696 S32: -0.7795 S33: -0.1602 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5531 28.7654 35.2384 REMARK 3 T TENSOR REMARK 3 T11: 0.5104 T22: 0.3880 REMARK 3 T33: 0.3170 T12: -0.0860 REMARK 3 T13: 0.0182 T23: -0.0863 REMARK 3 L TENSOR REMARK 3 L11: 5.8124 L22: 6.2458 REMARK 3 L33: 6.0219 L12: -0.7907 REMARK 3 L13: 1.0596 L23: -1.3328 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: -0.5050 S13: 0.5346 REMARK 3 S21: 0.4616 S22: -0.1075 S23: -0.2709 REMARK 3 S31: -1.1734 S32: 0.3059 S33: 0.1718 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 43.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DSB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-35 % PEG MME 2000, 100-300 MM KBR, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.66950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.41100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.66950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.41100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 203 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 158 CD CE NZ REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 LYS B 14 CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 164 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 67 O HOH A 301 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 30 CA - CB - SG ANGL. DEV. = 9.7 DEGREES REMARK 500 CYS B 30 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -86.04 -92.43 REMARK 500 LYS A 98 -61.77 -94.94 REMARK 500 GLN B 2 -97.52 54.36 REMARK 500 LYS B 7 -84.84 -97.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAJ A 201 DBREF 6PD7 A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6PD7 B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET OAJ A 201 28 HETNAM OAJ (3R)-4-{[4-(4-CYANO-3-METHYLPHENOXY) HETNAM 2 OAJ PHENYL]ACETYL}MORPHOLINE-3-CARBOXYLIC ACID FORMUL 3 OAJ C21 H20 N2 O5 FORMUL 4 HOH *303(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 66 GLY A 83 1 18 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LYS B 48 1 8 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 LYS B 188 1 19 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O TYR A 59 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N VAL B 22 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.34 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.27 CISPEP 1 VAL A 150 PRO A 151 0 -2.95 CISPEP 2 VAL B 150 PRO B 151 0 -1.61 SITE 1 AC1 9 HIS A 32 GLY A 149 VAL A 150 PRO A 151 SITE 2 AC1 9 PRO A 163 GLN A 164 THR A 168 MET A 171 SITE 3 AC1 9 PHE B 29 CRYST1 119.339 48.822 91.538 90.00 117.03 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008379 0.000000 0.004275 0.00000 SCALE2 0.000000 0.020483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012264 0.00000