data_6PDK # _entry.id 6PDK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6PDK WWPDB D_1000242364 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6PDK _pdbx_database_status.recvd_initial_deposition_date 2019-06-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Matsuyama, B.Y.' 1 0000-0002-9995-5434 'Farah, C.S.' 2 0000-0003-3110-6302 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Plos Pathog.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1553-7374 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first e1007651 _citation.page_last e1007651 _citation.title 'The opportunistic pathogen Stenotrophomonas maltophilia utilizes a type IV secretion system for interbacterial killing.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1007651 _citation.pdbx_database_id_PubMed 31513674 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bayer-Santos, E.' 1 0000-0003-3832-3449 primary 'Cenens, W.' 2 0000-0002-0856-4703 primary 'Matsuyama, B.Y.' 3 0000-0002-9995-5434 primary 'Oka, G.U.' 4 ? primary 'Di Sessa, G.' 5 0000-0001-6574-8878 primary 'Mininel, I.D.V.' 6 0000-0002-3860-5641 primary 'Alves, T.L.' 7 0000-0003-2473-2313 primary 'Farah, C.S.' 8 0000-0003-3110-6302 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6PDK _cell.details ? _cell.formula_units_Z ? _cell.length_a 67.532 _cell.length_a_esd ? _cell.length_b 67.532 _cell.length_b_esd ? _cell.length_c 149.386 _cell.length_c_esd ? _cell.volume 590010.518 _cell.volume_esd ? _cell.Z_PDB 9 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 30486.383 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 3 non-polymer syn 'BROMIDE ION' 79.904 11 ? ? ? ? 4 water nat water 18.015 149 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMATQTGRTINGHTYTDAPVDVKLGPNTFRIPANYLDSQIAPWPGEGVTLVIEWPDMKPTA PGARANPRTNDFRKEIPIRINYVDRVPVETLLSRLSSNEAITEEGSVERGDPRDRLDQRVAKPQTLGLTPYAIDEAKMVV YAKKYEARYGKPPVRNPAYERDWYIARQGDGRISSFIKCDGEEFRRDGVRLEGREVISEPGEVAAGCVHYFVDIDNKLSV SLDYKRAFLKDWKRMEEAVRDVIARTRSK ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMATQTGRTINGHTYTDAPVDVKLGPNTFRIPANYLDSQIAPWPGEGVTLVIEWPDMKPTA PGARANPRTNDFRKEIPIRINYVDRVPVETLLSRLSSNEAITEEGSVERGDPRDRLDQRVAKPQTLGLTPYAIDEAKMVV YAKKYEARYGKPPVRNPAYERDWYIARQGDGRISSFIKCDGEEFRRDGVRLEGREVISEPGEVAAGCVHYFVDIDNKLSV SLDYKRAFLKDWKRMEEAVRDVIARTRSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ALA n 1 23 THR n 1 24 GLN n 1 25 THR n 1 26 GLY n 1 27 ARG n 1 28 THR n 1 29 ILE n 1 30 ASN n 1 31 GLY n 1 32 HIS n 1 33 THR n 1 34 TYR n 1 35 THR n 1 36 ASP n 1 37 ALA n 1 38 PRO n 1 39 VAL n 1 40 ASP n 1 41 VAL n 1 42 LYS n 1 43 LEU n 1 44 GLY n 1 45 PRO n 1 46 ASN n 1 47 THR n 1 48 PHE n 1 49 ARG n 1 50 ILE n 1 51 PRO n 1 52 ALA n 1 53 ASN n 1 54 TYR n 1 55 LEU n 1 56 ASP n 1 57 SER n 1 58 GLN n 1 59 ILE n 1 60 ALA n 1 61 PRO n 1 62 TRP n 1 63 PRO n 1 64 GLY n 1 65 GLU n 1 66 GLY n 1 67 VAL n 1 68 THR n 1 69 LEU n 1 70 VAL n 1 71 ILE n 1 72 GLU n 1 73 TRP n 1 74 PRO n 1 75 ASP n 1 76 MET n 1 77 LYS n 1 78 PRO n 1 79 THR n 1 80 ALA n 1 81 PRO n 1 82 GLY n 1 83 ALA n 1 84 ARG n 1 85 ALA n 1 86 ASN n 1 87 PRO n 1 88 ARG n 1 89 THR n 1 90 ASN n 1 91 ASP n 1 92 PHE n 1 93 ARG n 1 94 LYS n 1 95 GLU n 1 96 ILE n 1 97 PRO n 1 98 ILE n 1 99 ARG n 1 100 ILE n 1 101 ASN n 1 102 TYR n 1 103 VAL n 1 104 ASP n 1 105 ARG n 1 106 VAL n 1 107 PRO n 1 108 VAL n 1 109 GLU n 1 110 THR n 1 111 LEU n 1 112 LEU n 1 113 SER n 1 114 ARG n 1 115 LEU n 1 116 SER n 1 117 SER n 1 118 ASN n 1 119 GLU n 1 120 ALA n 1 121 ILE n 1 122 THR n 1 123 GLU n 1 124 GLU n 1 125 GLY n 1 126 SER n 1 127 VAL n 1 128 GLU n 1 129 ARG n 1 130 GLY n 1 131 ASP n 1 132 PRO n 1 133 ARG n 1 134 ASP n 1 135 ARG n 1 136 LEU n 1 137 ASP n 1 138 GLN n 1 139 ARG n 1 140 VAL n 1 141 ALA n 1 142 LYS n 1 143 PRO n 1 144 GLN n 1 145 THR n 1 146 LEU n 1 147 GLY n 1 148 LEU n 1 149 THR n 1 150 PRO n 1 151 TYR n 1 152 ALA n 1 153 ILE n 1 154 ASP n 1 155 GLU n 1 156 ALA n 1 157 LYS n 1 158 MET n 1 159 VAL n 1 160 VAL n 1 161 TYR n 1 162 ALA n 1 163 LYS n 1 164 LYS n 1 165 TYR n 1 166 GLU n 1 167 ALA n 1 168 ARG n 1 169 TYR n 1 170 GLY n 1 171 LYS n 1 172 PRO n 1 173 PRO n 1 174 VAL n 1 175 ARG n 1 176 ASN n 1 177 PRO n 1 178 ALA n 1 179 TYR n 1 180 GLU n 1 181 ARG n 1 182 ASP n 1 183 TRP n 1 184 TYR n 1 185 ILE n 1 186 ALA n 1 187 ARG n 1 188 GLN n 1 189 GLY n 1 190 ASP n 1 191 GLY n 1 192 ARG n 1 193 ILE n 1 194 SER n 1 195 SER n 1 196 PHE n 1 197 ILE n 1 198 LYS n 1 199 CYS n 1 200 ASP n 1 201 GLY n 1 202 GLU n 1 203 GLU n 1 204 PHE n 1 205 ARG n 1 206 ARG n 1 207 ASP n 1 208 GLY n 1 209 VAL n 1 210 ARG n 1 211 LEU n 1 212 GLU n 1 213 GLY n 1 214 ARG n 1 215 GLU n 1 216 VAL n 1 217 ILE n 1 218 SER n 1 219 GLU n 1 220 PRO n 1 221 GLY n 1 222 GLU n 1 223 VAL n 1 224 ALA n 1 225 ALA n 1 226 GLY n 1 227 CYS n 1 228 VAL n 1 229 HIS n 1 230 TYR n 1 231 PHE n 1 232 VAL n 1 233 ASP n 1 234 ILE n 1 235 ASP n 1 236 ASN n 1 237 LYS n 1 238 LEU n 1 239 SER n 1 240 VAL n 1 241 SER n 1 242 LEU n 1 243 ASP n 1 244 TYR n 1 245 LYS n 1 246 ARG n 1 247 ALA n 1 248 PHE n 1 249 LEU n 1 250 LYS n 1 251 ASP n 1 252 TRP n 1 253 LYS n 1 254 ARG n 1 255 MET n 1 256 GLU n 1 257 GLU n 1 258 ALA n 1 259 VAL n 1 260 ARG n 1 261 ASP n 1 262 VAL n 1 263 ILE n 1 264 ALA n 1 265 ARG n 1 266 THR n 1 267 ARG n 1 268 SER n 1 269 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 269 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Smlt3025 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K279a _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Stenotrophomonas maltophilia (strain K279a)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 522373 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B2FJJ6_STRMK _struct_ref.pdbx_db_accession B2FJJ6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ATQTGRTINGHTYTDAPVDVKLGPNTFRIPANYLDSQIAPWPGEGVTLVIEWPDMKPTAPGARANPRTNDFRKEIPIRIN YVDRVPVETLLSRLSSNEAITEEGSVERGDPRDRLDQRVAKPQTLGLTPYAIDEAKMVVYAKKYEARYGKPPVRNPAYER DWYIARQGDGRISSFIKCDGEEFRRDGVRLEGREVISEPGEVAAGCVHYFVDIDNKLSVSLDYKRAFLKDWKRMEEAVRD VIARTRSK ; _struct_ref.pdbx_align_begin 86 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6PDK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 269 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B2FJJ6 _struct_ref_seq.db_align_beg 86 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 333 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 86 _struct_ref_seq.pdbx_auth_seq_align_end 333 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6PDK MET A 1 ? UNP B2FJJ6 ? ? 'initiating methionine' 65 1 1 6PDK GLY A 2 ? UNP B2FJJ6 ? ? 'expression tag' 66 2 1 6PDK SER A 3 ? UNP B2FJJ6 ? ? 'expression tag' 67 3 1 6PDK SER A 4 ? UNP B2FJJ6 ? ? 'expression tag' 68 4 1 6PDK HIS A 5 ? UNP B2FJJ6 ? ? 'expression tag' 69 5 1 6PDK HIS A 6 ? UNP B2FJJ6 ? ? 'expression tag' 70 6 1 6PDK HIS A 7 ? UNP B2FJJ6 ? ? 'expression tag' 71 7 1 6PDK HIS A 8 ? UNP B2FJJ6 ? ? 'expression tag' 72 8 1 6PDK HIS A 9 ? UNP B2FJJ6 ? ? 'expression tag' 73 9 1 6PDK HIS A 10 ? UNP B2FJJ6 ? ? 'expression tag' 74 10 1 6PDK SER A 11 ? UNP B2FJJ6 ? ? 'expression tag' 75 11 1 6PDK SER A 12 ? UNP B2FJJ6 ? ? 'expression tag' 76 12 1 6PDK GLY A 13 ? UNP B2FJJ6 ? ? 'expression tag' 77 13 1 6PDK LEU A 14 ? UNP B2FJJ6 ? ? 'expression tag' 78 14 1 6PDK VAL A 15 ? UNP B2FJJ6 ? ? 'expression tag' 79 15 1 6PDK PRO A 16 ? UNP B2FJJ6 ? ? 'expression tag' 80 16 1 6PDK ARG A 17 ? UNP B2FJJ6 ? ? 'expression tag' 81 17 1 6PDK GLY A 18 ? UNP B2FJJ6 ? ? 'expression tag' 82 18 1 6PDK SER A 19 ? UNP B2FJJ6 ? ? 'expression tag' 83 19 1 6PDK HIS A 20 ? UNP B2FJJ6 ? ? 'expression tag' 84 20 1 6PDK MET A 21 ? UNP B2FJJ6 ? ? 'expression tag' 85 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6PDK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1M Imidazole/MES Monohydrate pH 6.5 0.03M Sodium Fluoride 0.03M Sodium Bromide 0.03M Sodium Iodide 12.5% MPD 12.5% PEG10000 12.5% PEG3350 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-04-24 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5419 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'LNLS BEAMLINE W01B-MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5419 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline W01B-MX2 _diffrn_source.pdbx_synchrotron_site LNLS # _reflns.B_iso_Wilson_estimate 33.03 _reflns.entry_id 6PDK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 46.05 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19897 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.91 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3140 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 39.65 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6PDK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 21.87 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 19881 _refine.ls_number_reflns_R_free 1988 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.34 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2003 _refine.ls_R_factor_R_free 0.2486 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1951 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.7952 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2810 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 21.87 _refine_hist.number_atoms_solvent 149 _refine_hist.number_atoms_total 2148 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1984 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0075 ? 2046 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9361 ? 2778 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0580 ? 295 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0060 ? 371 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 24.3320 ? 797 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.90 1.95 . . 135 1183 91.78 . . . 0.3871 . 0.3032 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.95 2.00 . . 147 1260 99.72 . . . 0.3011 . 0.2427 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.00 2.06 . . 142 1310 99.79 . . . 0.2880 . 0.2307 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.06 2.13 . . 143 1288 100.00 . . . 0.3039 . 0.2317 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.13 2.20 . . 137 1290 99.86 . . . 0.3362 . 0.2322 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.20 2.29 . . 139 1283 100.00 . . . 0.2680 . 0.2252 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.29 2.39 . . 142 1289 100.00 . . . 0.3110 . 0.2251 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.39 2.52 . . 141 1284 100.00 . . . 0.2996 . 0.2192 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.52 2.68 . . 139 1277 99.93 . . . 0.2822 . 0.2123 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.68 2.88 . . 147 1292 100.00 . . . 0.2704 . 0.2202 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.88 3.17 . . 141 1296 100.00 . . . 0.2567 . 0.2087 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.17 3.63 . . 141 1262 100.00 . . . 0.2199 . 0.1774 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.63 4.57 . . 144 1298 100.00 . . . 0.2284 . 0.1617 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.57 21.87 . . 150 1281 99.79 . . . 0.1929 . 0.1718 . . . . . . . . . . # _struct.entry_id 6PDK _struct.title 'The Structure of Smlt3025, an immunity protein of the Stenotrophomonas maltophilia type IV secretion system' _struct.pdbx_descriptor 'Uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6PDK _struct_keywords.text 'Type IV Secretion System, Bacterial competition, ANTITOXIN' _struct_keywords.pdbx_keywords ANTITOXIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 53 ? LEU A 55 ? ASN A 117 LEU A 119 5 ? 3 HELX_P HELX_P2 AA2 ASP A 91 ? ARG A 93 ? ASP A 155 ARG A 157 5 ? 3 HELX_P HELX_P3 AA3 PRO A 107 ? GLU A 109 ? PRO A 171 GLU A 173 5 ? 3 HELX_P HELX_P4 AA4 THR A 110 ? SER A 116 ? THR A 174 SER A 180 1 ? 7 HELX_P HELX_P5 AA5 VAL A 127 ? ASP A 131 ? VAL A 191 ASP A 195 5 ? 5 HELX_P HELX_P6 AA6 ARG A 135 ? ARG A 139 ? ARG A 199 ARG A 203 5 ? 5 HELX_P HELX_P7 AA7 ASP A 154 ? GLY A 170 ? ASP A 218 GLY A 234 1 ? 17 HELX_P HELX_P8 AA8 ASN A 176 ? GLU A 180 ? ASN A 240 GLU A 244 5 ? 5 HELX_P HELX_P9 AA9 ALA A 247 ? LYS A 250 ? ALA A 311 LYS A 314 5 ? 4 HELX_P HELX_P10 AB1 ASP A 251 ? ARG A 267 ? ASP A 315 ARG A 331 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 199 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 227 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 263 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 291 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.062 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TRP 73 A . ? TRP 137 A PRO 74 A ? PRO 138 A 1 6.43 2 ASN 86 A . ? ASN 150 A PRO 87 A ? PRO 151 A 1 1.19 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 9 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel AA3 8 9 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 25 ? ILE A 29 ? THR A 89 ILE A 93 AA1 2 HIS A 32 ? THR A 35 ? HIS A 96 THR A 99 AA2 1 PRO A 38 ? LEU A 43 ? PRO A 102 LEU A 107 AA2 2 ASN A 46 ? PRO A 51 ? ASN A 110 PRO A 115 AA3 1 LYS A 77 ? PRO A 78 ? LYS A 141 PRO A 142 AA3 2 VAL A 67 ? GLU A 72 ? VAL A 131 GLU A 136 AA3 3 GLU A 95 ? TYR A 102 ? GLU A 159 TYR A 166 AA3 4 LEU A 238 ? LYS A 245 ? LEU A 302 LYS A 309 AA3 5 GLY A 226 ? ASP A 233 ? GLY A 290 ASP A 297 AA3 6 ILE A 193 ? CYS A 199 ? ILE A 257 CYS A 263 AA3 7 ASP A 182 ? ARG A 187 ? ASP A 246 ARG A 251 AA3 8 THR A 149 ? ALA A 152 ? THR A 213 ALA A 216 AA3 9 VAL A 140 ? ALA A 141 ? VAL A 204 ALA A 205 AA4 1 VAL A 209 ? GLU A 212 ? VAL A 273 GLU A 276 AA4 2 GLU A 215 ? SER A 218 ? GLU A 279 SER A 282 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 26 ? N GLY A 90 O TYR A 34 ? O TYR A 98 AA2 1 2 N VAL A 41 ? N VAL A 105 O PHE A 48 ? O PHE A 112 AA3 1 2 O LYS A 77 ? O LYS A 141 N GLU A 72 ? N GLU A 136 AA3 2 3 N LEU A 69 ? N LEU A 133 O ILE A 98 ? O ILE A 162 AA3 3 4 N ARG A 99 ? N ARG A 163 O SER A 241 ? O SER A 305 AA3 4 5 O VAL A 240 ? O VAL A 304 N PHE A 231 ? N PHE A 295 AA3 5 6 O TYR A 230 A O TYR A 294 N PHE A 196 ? N PHE A 260 AA3 6 7 O SER A 194 ? O SER A 258 N ALA A 186 ? N ALA A 250 AA3 7 8 O ILE A 185 ? O ILE A 249 N THR A 149 ? N THR A 213 AA3 8 9 O ALA A 152 ? O ALA A 216 N VAL A 140 ? N VAL A 204 AA4 1 2 N ARG A 210 ? N ARG A 274 O ILE A 217 ? O ILE A 281 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 401 ? 3 'binding site for residue CL A 401' AC2 Software A CL 402 ? 1 'binding site for residue CL A 402' AC3 Software A CL 403 ? 3 'binding site for residue CL A 403' AC4 Software A CL 404 ? 1 'binding site for residue CL A 404' AC5 Software A BR 405 ? 1 'binding site for residue BR A 405' AC6 Software A BR 406 ? 2 'binding site for residue BR A 406' AC7 Software A BR 407 ? 1 'binding site for residue BR A 407' AC8 Software A BR 408 ? 1 'binding site for residue BR A 408' AC9 Software A BR 409 ? 1 'binding site for residue BR A 409' AD1 Software A BR 410 ? 2 'binding site for residue BR A 410' AD2 Software A BR 411 ? 1 'binding site for residue BR A 411' AD3 Software A BR 412 ? 1 'binding site for residue BR A 412' AD4 Software A BR 413 ? 1 'binding site for residue BR A 413' AD5 Software A BR 415 ? 4 'binding site for residue BR A 415' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 THR A 28 ? THR A 92 . ? 9_554 ? 2 AC1 3 GLN A 188 ? GLN A 252 . ? 1_555 ? 3 AC1 3 GLY A 191 ? GLY A 255 . ? 1_555 ? 4 AC2 1 ASP A 40 ? ASP A 104 . ? 1_555 ? 5 AC3 3 GLY A 44 ? GLY A 108 . ? 1_555 ? 6 AC3 3 GLU A 65 ? GLU A 129 . ? 1_555 ? 7 AC3 3 HOH Q . ? HOH A 589 . ? 1_555 ? 8 AC4 1 GLY A 31 ? GLY A 95 . ? 9_554 ? 9 AC5 1 GLN A 144 ? GLN A 208 . ? 1_555 ? 10 AC6 2 THR A 89 ? THR A 153 . ? 1_555 ? 11 AC6 2 HOH Q . ? HOH A 634 . ? 1_555 ? 12 AC7 1 ILE A 193 ? ILE A 257 . ? 1_555 ? 13 AC8 1 LYS A 198 ? LYS A 262 . ? 1_555 ? 14 AC9 1 ARG A 192 ? ARG A 256 . ? 1_555 ? 15 AD1 2 ARG A 181 ? ARG A 245 . ? 1_555 ? 16 AD1 2 HOH Q . ? HOH A 552 . ? 1_555 ? 17 AD2 1 HOH Q . ? HOH A 606 . ? 1_555 ? 18 AD3 1 HOH Q . ? HOH A 647 . ? 1_555 ? 19 AD4 1 ARG A 105 ? ARG A 169 . ? 1_555 ? 20 AD5 4 ASP A 56 ? ASP A 120 . ? 1_555 ? 21 AD5 4 SER A 57 ? SER A 121 . ? 1_555 ? 22 AD5 4 ALA A 60 ? ALA A 124 . ? 1_555 ? 23 AD5 4 TRP A 62 ? TRP A 126 . ? 1_555 ? # _atom_sites.entry_id 6PDK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.014808 _atom_sites.fract_transf_matrix[1][2] 0.008549 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017099 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006694 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BR ? ? 25.79822 9.11301 ? ? 1.35700 25.34896 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CL ? ? 9.50761 7.44341 ? ? 1.04373 23.83732 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 65 ? ? ? A . n A 1 2 GLY 2 66 ? ? ? A . n A 1 3 SER 3 67 ? ? ? A . n A 1 4 SER 4 68 ? ? ? A . n A 1 5 HIS 5 69 ? ? ? A . n A 1 6 HIS 6 70 ? ? ? A . n A 1 7 HIS 7 71 ? ? ? A . n A 1 8 HIS 8 72 ? ? ? A . n A 1 9 HIS 9 73 ? ? ? A . n A 1 10 HIS 10 74 ? ? ? A . n A 1 11 SER 11 75 ? ? ? A . n A 1 12 SER 12 76 ? ? ? A . n A 1 13 GLY 13 77 ? ? ? A . n A 1 14 LEU 14 78 ? ? ? A . n A 1 15 VAL 15 79 ? ? ? A . n A 1 16 PRO 16 80 ? ? ? A . n A 1 17 ARG 17 81 ? ? ? A . n A 1 18 GLY 18 82 ? ? ? A . n A 1 19 SER 19 83 ? ? ? A . n A 1 20 HIS 20 84 ? ? ? A . n A 1 21 MET 21 85 ? ? ? A . n A 1 22 ALA 22 86 86 ALA ALA A . n A 1 23 THR 23 87 87 THR THR A . n A 1 24 GLN 24 88 88 GLN GLN A . n A 1 25 THR 25 89 89 THR THR A . n A 1 26 GLY 26 90 90 GLY GLY A . n A 1 27 ARG 27 91 91 ARG ARG A . n A 1 28 THR 28 92 92 THR THR A . n A 1 29 ILE 29 93 93 ILE ILE A . n A 1 30 ASN 30 94 94 ASN ASN A . n A 1 31 GLY 31 95 95 GLY GLY A . n A 1 32 HIS 32 96 96 HIS HIS A . n A 1 33 THR 33 97 97 THR THR A . n A 1 34 TYR 34 98 98 TYR TYR A . n A 1 35 THR 35 99 99 THR THR A . n A 1 36 ASP 36 100 100 ASP ASP A . n A 1 37 ALA 37 101 101 ALA ALA A . n A 1 38 PRO 38 102 102 PRO PRO A . n A 1 39 VAL 39 103 103 VAL VAL A . n A 1 40 ASP 40 104 104 ASP ASP A . n A 1 41 VAL 41 105 105 VAL VAL A . n A 1 42 LYS 42 106 106 LYS LYS A . n A 1 43 LEU 43 107 107 LEU LEU A . n A 1 44 GLY 44 108 108 GLY GLY A . n A 1 45 PRO 45 109 109 PRO PRO A . n A 1 46 ASN 46 110 110 ASN ASN A . n A 1 47 THR 47 111 111 THR THR A . n A 1 48 PHE 48 112 112 PHE PHE A . n A 1 49 ARG 49 113 113 ARG ARG A . n A 1 50 ILE 50 114 114 ILE ILE A . n A 1 51 PRO 51 115 115 PRO PRO A . n A 1 52 ALA 52 116 116 ALA ALA A . n A 1 53 ASN 53 117 117 ASN ASN A . n A 1 54 TYR 54 118 118 TYR TYR A . n A 1 55 LEU 55 119 119 LEU LEU A . n A 1 56 ASP 56 120 120 ASP ASP A . n A 1 57 SER 57 121 121 SER SER A . n A 1 58 GLN 58 122 122 GLN GLN A . n A 1 59 ILE 59 123 123 ILE ILE A . n A 1 60 ALA 60 124 124 ALA ALA A . n A 1 61 PRO 61 125 125 PRO PRO A . n A 1 62 TRP 62 126 126 TRP TRP A . n A 1 63 PRO 63 127 127 PRO PRO A . n A 1 64 GLY 64 128 128 GLY GLY A . n A 1 65 GLU 65 129 129 GLU GLU A . n A 1 66 GLY 66 130 130 GLY GLY A . n A 1 67 VAL 67 131 131 VAL VAL A . n A 1 68 THR 68 132 132 THR THR A . n A 1 69 LEU 69 133 133 LEU LEU A . n A 1 70 VAL 70 134 134 VAL VAL A . n A 1 71 ILE 71 135 135 ILE ILE A . n A 1 72 GLU 72 136 136 GLU GLU A . n A 1 73 TRP 73 137 137 TRP TRP A . n A 1 74 PRO 74 138 138 PRO PRO A . n A 1 75 ASP 75 139 139 ASP ASP A . n A 1 76 MET 76 140 140 MET MET A . n A 1 77 LYS 77 141 141 LYS LYS A . n A 1 78 PRO 78 142 142 PRO PRO A . n A 1 79 THR 79 143 143 THR THR A . n A 1 80 ALA 80 144 144 ALA ALA A . n A 1 81 PRO 81 145 145 PRO PRO A . n A 1 82 GLY 82 146 146 GLY GLY A . n A 1 83 ALA 83 147 147 ALA ALA A . n A 1 84 ARG 84 148 148 ARG ARG A . n A 1 85 ALA 85 149 149 ALA ALA A . n A 1 86 ASN 86 150 150 ASN ASN A . n A 1 87 PRO 87 151 151 PRO PRO A . n A 1 88 ARG 88 152 152 ARG ARG A . n A 1 89 THR 89 153 153 THR THR A . n A 1 90 ASN 90 154 154 ASN ASN A . n A 1 91 ASP 91 155 155 ASP ASP A . n A 1 92 PHE 92 156 156 PHE PHE A . n A 1 93 ARG 93 157 157 ARG ARG A . n A 1 94 LYS 94 158 158 LYS LYS A . n A 1 95 GLU 95 159 159 GLU GLU A . n A 1 96 ILE 96 160 160 ILE ILE A . n A 1 97 PRO 97 161 161 PRO PRO A . n A 1 98 ILE 98 162 162 ILE ILE A . n A 1 99 ARG 99 163 163 ARG ARG A . n A 1 100 ILE 100 164 164 ILE ILE A . n A 1 101 ASN 101 165 165 ASN ASN A . n A 1 102 TYR 102 166 166 TYR TYR A . n A 1 103 VAL 103 167 167 VAL VAL A . n A 1 104 ASP 104 168 168 ASP ASP A . n A 1 105 ARG 105 169 169 ARG ARG A . n A 1 106 VAL 106 170 170 VAL VAL A . n A 1 107 PRO 107 171 171 PRO PRO A . n A 1 108 VAL 108 172 172 VAL VAL A . n A 1 109 GLU 109 173 173 GLU GLU A . n A 1 110 THR 110 174 174 THR THR A . n A 1 111 LEU 111 175 175 LEU LEU A . n A 1 112 LEU 112 176 176 LEU LEU A . n A 1 113 SER 113 177 177 SER SER A . n A 1 114 ARG 114 178 178 ARG ARG A . n A 1 115 LEU 115 179 179 LEU LEU A . n A 1 116 SER 116 180 180 SER SER A . n A 1 117 SER 117 181 181 SER SER A . n A 1 118 ASN 118 182 182 ASN ASN A . n A 1 119 GLU 119 183 183 GLU GLU A . n A 1 120 ALA 120 184 184 ALA ALA A . n A 1 121 ILE 121 185 185 ILE ILE A . n A 1 122 THR 122 186 186 THR THR A . n A 1 123 GLU 123 187 187 GLU GLU A . n A 1 124 GLU 124 188 188 GLU GLU A . n A 1 125 GLY 125 189 189 GLY GLY A . n A 1 126 SER 126 190 190 SER SER A . n A 1 127 VAL 127 191 191 VAL VAL A . n A 1 128 GLU 128 192 192 GLU GLU A . n A 1 129 ARG 129 193 193 ARG ARG A . n A 1 130 GLY 130 194 194 GLY GLY A . n A 1 131 ASP 131 195 195 ASP ASP A . n A 1 132 PRO 132 196 196 PRO PRO A . n A 1 133 ARG 133 197 197 ARG ARG A . n A 1 134 ASP 134 198 198 ASP ASP A . n A 1 135 ARG 135 199 199 ARG ARG A . n A 1 136 LEU 136 200 200 LEU LEU A . n A 1 137 ASP 137 201 201 ASP ASP A . n A 1 138 GLN 138 202 202 GLN GLN A . n A 1 139 ARG 139 203 203 ARG ARG A . n A 1 140 VAL 140 204 204 VAL VAL A . n A 1 141 ALA 141 205 205 ALA ALA A . n A 1 142 LYS 142 206 206 LYS LYS A . n A 1 143 PRO 143 207 207 PRO PRO A . n A 1 144 GLN 144 208 208 GLN GLN A . n A 1 145 THR 145 209 209 THR THR A . n A 1 146 LEU 146 210 210 LEU LEU A . n A 1 147 GLY 147 211 211 GLY GLY A . n A 1 148 LEU 148 212 212 LEU LEU A . n A 1 149 THR 149 213 213 THR THR A . n A 1 150 PRO 150 214 214 PRO PRO A . n A 1 151 TYR 151 215 215 TYR TYR A . n A 1 152 ALA 152 216 216 ALA ALA A . n A 1 153 ILE 153 217 217 ILE ILE A . n A 1 154 ASP 154 218 218 ASP ASP A . n A 1 155 GLU 155 219 219 GLU GLU A . n A 1 156 ALA 156 220 220 ALA ALA A . n A 1 157 LYS 157 221 221 LYS LYS A . n A 1 158 MET 158 222 222 MET MET A . n A 1 159 VAL 159 223 223 VAL VAL A . n A 1 160 VAL 160 224 224 VAL VAL A . n A 1 161 TYR 161 225 225 TYR TYR A . n A 1 162 ALA 162 226 226 ALA ALA A . n A 1 163 LYS 163 227 227 LYS LYS A . n A 1 164 LYS 164 228 228 LYS LYS A . n A 1 165 TYR 165 229 229 TYR TYR A . n A 1 166 GLU 166 230 230 GLU GLU A . n A 1 167 ALA 167 231 231 ALA ALA A . n A 1 168 ARG 168 232 232 ARG ARG A . n A 1 169 TYR 169 233 233 TYR TYR A . n A 1 170 GLY 170 234 234 GLY GLY A . n A 1 171 LYS 171 235 235 LYS LYS A . n A 1 172 PRO 172 236 236 PRO PRO A . n A 1 173 PRO 173 237 237 PRO PRO A . n A 1 174 VAL 174 238 238 VAL VAL A . n A 1 175 ARG 175 239 239 ARG ARG A . n A 1 176 ASN 176 240 240 ASN ASN A . n A 1 177 PRO 177 241 241 PRO PRO A . n A 1 178 ALA 178 242 242 ALA ALA A . n A 1 179 TYR 179 243 243 TYR TYR A . n A 1 180 GLU 180 244 244 GLU GLU A . n A 1 181 ARG 181 245 245 ARG ARG A . n A 1 182 ASP 182 246 246 ASP ASP A . n A 1 183 TRP 183 247 247 TRP TRP A . n A 1 184 TYR 184 248 248 TYR TYR A . n A 1 185 ILE 185 249 249 ILE ILE A . n A 1 186 ALA 186 250 250 ALA ALA A . n A 1 187 ARG 187 251 251 ARG ARG A . n A 1 188 GLN 188 252 252 GLN GLN A . n A 1 189 GLY 189 253 253 GLY GLY A . n A 1 190 ASP 190 254 254 ASP ASP A . n A 1 191 GLY 191 255 255 GLY GLY A . n A 1 192 ARG 192 256 256 ARG ARG A . n A 1 193 ILE 193 257 257 ILE ILE A . n A 1 194 SER 194 258 258 SER SER A . n A 1 195 SER 195 259 259 SER SER A . n A 1 196 PHE 196 260 260 PHE PHE A . n A 1 197 ILE 197 261 261 ILE ILE A . n A 1 198 LYS 198 262 262 LYS LYS A . n A 1 199 CYS 199 263 263 CYS CYS A . n A 1 200 ASP 200 264 264 ASP ASP A . n A 1 201 GLY 201 265 265 GLY GLY A . n A 1 202 GLU 202 266 266 GLU GLU A . n A 1 203 GLU 203 267 267 GLU GLU A . n A 1 204 PHE 204 268 268 PHE PHE A . n A 1 205 ARG 205 269 269 ARG ARG A . n A 1 206 ARG 206 270 270 ARG ARG A . n A 1 207 ASP 207 271 271 ASP ASP A . n A 1 208 GLY 208 272 272 GLY GLY A . n A 1 209 VAL 209 273 273 VAL VAL A . n A 1 210 ARG 210 274 274 ARG ARG A . n A 1 211 LEU 211 275 275 LEU LEU A . n A 1 212 GLU 212 276 276 GLU GLU A . n A 1 213 GLY 213 277 277 GLY GLY A . n A 1 214 ARG 214 278 278 ARG ARG A . n A 1 215 GLU 215 279 279 GLU GLU A . n A 1 216 VAL 216 280 280 VAL VAL A . n A 1 217 ILE 217 281 281 ILE ILE A . n A 1 218 SER 218 282 282 SER SER A . n A 1 219 GLU 219 283 283 GLU GLU A . n A 1 220 PRO 220 284 284 PRO PRO A . n A 1 221 GLY 221 285 285 GLY GLY A . n A 1 222 GLU 222 286 286 GLU GLU A . n A 1 223 VAL 223 287 287 VAL VAL A . n A 1 224 ALA 224 288 288 ALA ALA A . n A 1 225 ALA 225 289 289 ALA ALA A . n A 1 226 GLY 226 290 290 GLY GLY A . n A 1 227 CYS 227 291 291 CYS CYS A . n A 1 228 VAL 228 292 292 VAL VAL A . n A 1 229 HIS 229 293 293 HIS HIS A . n A 1 230 TYR 230 294 294 TYR TYR A A n A 1 231 PHE 231 295 295 PHE PHE A . n A 1 232 VAL 232 296 296 VAL VAL A . n A 1 233 ASP 233 297 297 ASP ASP A . n A 1 234 ILE 234 298 298 ILE ILE A . n A 1 235 ASP 235 299 299 ASP ASP A . n A 1 236 ASN 236 300 300 ASN ASN A . n A 1 237 LYS 237 301 301 LYS LYS A . n A 1 238 LEU 238 302 302 LEU LEU A . n A 1 239 SER 239 303 303 SER SER A . n A 1 240 VAL 240 304 304 VAL VAL A . n A 1 241 SER 241 305 305 SER SER A . n A 1 242 LEU 242 306 306 LEU LEU A . n A 1 243 ASP 243 307 307 ASP ASP A . n A 1 244 TYR 244 308 308 TYR TYR A . n A 1 245 LYS 245 309 309 LYS LYS A . n A 1 246 ARG 246 310 310 ARG ARG A . n A 1 247 ALA 247 311 311 ALA ALA A . n A 1 248 PHE 248 312 312 PHE PHE A . n A 1 249 LEU 249 313 313 LEU LEU A . n A 1 250 LYS 250 314 314 LYS LYS A . n A 1 251 ASP 251 315 315 ASP ASP A . n A 1 252 TRP 252 316 316 TRP TRP A . n A 1 253 LYS 253 317 317 LYS LYS A . n A 1 254 ARG 254 318 318 ARG ARG A . n A 1 255 MET 255 319 319 MET MET A . n A 1 256 GLU 256 320 320 GLU GLU A . n A 1 257 GLU 257 321 321 GLU GLU A . n A 1 258 ALA 258 322 322 ALA ALA A . n A 1 259 VAL 259 323 323 VAL VAL A . n A 1 260 ARG 260 324 324 ARG ARG A . n A 1 261 ASP 261 325 325 ASP ASP A . n A 1 262 VAL 262 326 326 VAL VAL A . n A 1 263 ILE 263 327 327 ILE ILE A . n A 1 264 ALA 264 328 328 ALA ALA A . n A 1 265 ARG 265 329 329 ARG ARG A . n A 1 266 THR 266 330 330 THR THR A . n A 1 267 ARG 267 331 331 ARG ARG A . n A 1 268 SER 268 332 332 SER SER A . n A 1 269 LYS 269 333 333 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 401 1 CL CL A . C 2 CL 1 402 2 CL CL A . D 2 CL 1 403 3 CL CL A . E 2 CL 1 404 4 CL CL A . F 3 BR 1 405 1 BR BR A . G 3 BR 1 406 2 BR BR A . H 3 BR 1 407 3 BR BR A . I 3 BR 1 408 4 BR BR A . J 3 BR 1 409 5 BR BR A . K 3 BR 1 410 6 BR BR A . L 3 BR 1 411 7 BR BR A . M 3 BR 1 412 8 BR BR A . N 3 BR 1 413 9 BR BR A . O 3 BR 1 414 10 BR BR A . P 3 BR 1 415 11 BR BR A . Q 4 HOH 1 501 144 HOH HOH A . Q 4 HOH 2 502 140 HOH HOH A . Q 4 HOH 3 503 133 HOH HOH A . Q 4 HOH 4 504 75 HOH HOH A . Q 4 HOH 5 505 40 HOH HOH A . Q 4 HOH 6 506 148 HOH HOH A . Q 4 HOH 7 507 68 HOH HOH A . Q 4 HOH 8 508 62 HOH HOH A . Q 4 HOH 9 509 25 HOH HOH A . Q 4 HOH 10 510 18 HOH HOH A . Q 4 HOH 11 511 106 HOH HOH A . Q 4 HOH 12 512 7 HOH HOH A . Q 4 HOH 13 513 42 HOH HOH A . Q 4 HOH 14 514 35 HOH HOH A . Q 4 HOH 15 515 33 HOH HOH A . Q 4 HOH 16 516 45 HOH HOH A . Q 4 HOH 17 517 69 HOH HOH A . Q 4 HOH 18 518 120 HOH HOH A . Q 4 HOH 19 519 127 HOH HOH A . Q 4 HOH 20 520 9 HOH HOH A . Q 4 HOH 21 521 22 HOH HOH A . Q 4 HOH 22 522 102 HOH HOH A . Q 4 HOH 23 523 11 HOH HOH A . Q 4 HOH 24 524 76 HOH HOH A . Q 4 HOH 25 525 94 HOH HOH A . Q 4 HOH 26 526 36 HOH HOH A . Q 4 HOH 27 527 10 HOH HOH A . Q 4 HOH 28 528 20 HOH HOH A . Q 4 HOH 29 529 56 HOH HOH A . Q 4 HOH 30 530 30 HOH HOH A . Q 4 HOH 31 531 86 HOH HOH A . Q 4 HOH 32 532 32 HOH HOH A . Q 4 HOH 33 533 4 HOH HOH A . Q 4 HOH 34 534 2 HOH HOH A . Q 4 HOH 35 535 1 HOH HOH A . Q 4 HOH 36 536 8 HOH HOH A . Q 4 HOH 37 537 59 HOH HOH A . Q 4 HOH 38 538 48 HOH HOH A . Q 4 HOH 39 539 83 HOH HOH A . Q 4 HOH 40 540 28 HOH HOH A . Q 4 HOH 41 541 29 HOH HOH A . Q 4 HOH 42 542 92 HOH HOH A . Q 4 HOH 43 543 85 HOH HOH A . Q 4 HOH 44 544 21 HOH HOH A . Q 4 HOH 45 545 49 HOH HOH A . Q 4 HOH 46 546 72 HOH HOH A . Q 4 HOH 47 547 149 HOH HOH A . Q 4 HOH 48 548 3 HOH HOH A . Q 4 HOH 49 549 23 HOH HOH A . Q 4 HOH 50 550 129 HOH HOH A . Q 4 HOH 51 551 122 HOH HOH A . Q 4 HOH 52 552 63 HOH HOH A . Q 4 HOH 53 553 16 HOH HOH A . Q 4 HOH 54 554 54 HOH HOH A . Q 4 HOH 55 555 46 HOH HOH A . Q 4 HOH 56 556 60 HOH HOH A . Q 4 HOH 57 557 17 HOH HOH A . Q 4 HOH 58 558 24 HOH HOH A . Q 4 HOH 59 559 14 HOH HOH A . Q 4 HOH 60 560 13 HOH HOH A . Q 4 HOH 61 561 26 HOH HOH A . Q 4 HOH 62 562 67 HOH HOH A . Q 4 HOH 63 563 27 HOH HOH A . Q 4 HOH 64 564 52 HOH HOH A . Q 4 HOH 65 565 135 HOH HOH A . Q 4 HOH 66 566 119 HOH HOH A . Q 4 HOH 67 567 44 HOH HOH A . Q 4 HOH 68 568 93 HOH HOH A . Q 4 HOH 69 569 55 HOH HOH A . Q 4 HOH 70 570 19 HOH HOH A . Q 4 HOH 71 571 34 HOH HOH A . Q 4 HOH 72 572 109 HOH HOH A . Q 4 HOH 73 573 142 HOH HOH A . Q 4 HOH 74 574 47 HOH HOH A . Q 4 HOH 75 575 39 HOH HOH A . Q 4 HOH 76 576 81 HOH HOH A . Q 4 HOH 77 577 97 HOH HOH A . Q 4 HOH 78 578 66 HOH HOH A . Q 4 HOH 79 579 71 HOH HOH A . Q 4 HOH 80 580 112 HOH HOH A . Q 4 HOH 81 581 5 HOH HOH A . Q 4 HOH 82 582 91 HOH HOH A . Q 4 HOH 83 583 103 HOH HOH A . Q 4 HOH 84 584 64 HOH HOH A . Q 4 HOH 85 585 74 HOH HOH A . Q 4 HOH 86 586 43 HOH HOH A . Q 4 HOH 87 587 96 HOH HOH A . Q 4 HOH 88 588 104 HOH HOH A . Q 4 HOH 89 589 57 HOH HOH A . Q 4 HOH 90 590 117 HOH HOH A . Q 4 HOH 91 591 121 HOH HOH A . Q 4 HOH 92 592 15 HOH HOH A . Q 4 HOH 93 593 115 HOH HOH A . Q 4 HOH 94 594 51 HOH HOH A . Q 4 HOH 95 595 65 HOH HOH A . Q 4 HOH 96 596 130 HOH HOH A . Q 4 HOH 97 597 73 HOH HOH A . Q 4 HOH 98 598 31 HOH HOH A . Q 4 HOH 99 599 134 HOH HOH A . Q 4 HOH 100 600 12 HOH HOH A . Q 4 HOH 101 601 107 HOH HOH A . Q 4 HOH 102 602 6 HOH HOH A . Q 4 HOH 103 603 53 HOH HOH A . Q 4 HOH 104 604 89 HOH HOH A . Q 4 HOH 105 605 38 HOH HOH A . Q 4 HOH 106 606 139 HOH HOH A . Q 4 HOH 107 607 105 HOH HOH A . Q 4 HOH 108 608 95 HOH HOH A . Q 4 HOH 109 609 87 HOH HOH A . Q 4 HOH 110 610 147 HOH HOH A . Q 4 HOH 111 611 78 HOH HOH A . Q 4 HOH 112 612 100 HOH HOH A . Q 4 HOH 113 613 137 HOH HOH A . Q 4 HOH 114 614 88 HOH HOH A . Q 4 HOH 115 615 141 HOH HOH A . Q 4 HOH 116 616 118 HOH HOH A . Q 4 HOH 117 617 108 HOH HOH A . Q 4 HOH 118 618 84 HOH HOH A . Q 4 HOH 119 619 138 HOH HOH A . Q 4 HOH 120 620 113 HOH HOH A . Q 4 HOH 121 621 116 HOH HOH A . Q 4 HOH 122 622 114 HOH HOH A . Q 4 HOH 123 623 80 HOH HOH A . Q 4 HOH 124 624 146 HOH HOH A . Q 4 HOH 125 625 58 HOH HOH A . Q 4 HOH 126 626 143 HOH HOH A . Q 4 HOH 127 627 98 HOH HOH A . Q 4 HOH 128 628 145 HOH HOH A . Q 4 HOH 129 629 70 HOH HOH A . Q 4 HOH 130 630 99 HOH HOH A . Q 4 HOH 131 631 111 HOH HOH A . Q 4 HOH 132 632 41 HOH HOH A . Q 4 HOH 133 633 123 HOH HOH A . Q 4 HOH 134 634 61 HOH HOH A . Q 4 HOH 135 635 90 HOH HOH A . Q 4 HOH 136 636 37 HOH HOH A . Q 4 HOH 137 637 125 HOH HOH A . Q 4 HOH 138 638 82 HOH HOH A . Q 4 HOH 139 639 132 HOH HOH A . Q 4 HOH 140 640 50 HOH HOH A . Q 4 HOH 141 641 79 HOH HOH A . Q 4 HOH 142 642 128 HOH HOH A . Q 4 HOH 143 643 77 HOH HOH A . Q 4 HOH 144 644 110 HOH HOH A . Q 4 HOH 145 645 131 HOH HOH A . Q 4 HOH 146 646 136 HOH HOH A . Q 4 HOH 147 647 124 HOH HOH A . Q 4 HOH 148 648 101 HOH HOH A . Q 4 HOH 149 649 126 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A BR 414 ? O BR . 2 1 A HOH 617 ? Q HOH . 3 1 A HOH 626 ? Q HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-09-04 2 'Structure model' 1 1 2019-09-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_entry_details.entry_id 6PDK _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 123 ? ? -128.94 -69.00 2 1 GLU A 188 ? ? -39.82 106.85 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 65 ? A MET 1 2 1 Y 1 A GLY 66 ? A GLY 2 3 1 Y 1 A SER 67 ? A SER 3 4 1 Y 1 A SER 68 ? A SER 4 5 1 Y 1 A HIS 69 ? A HIS 5 6 1 Y 1 A HIS 70 ? A HIS 6 7 1 Y 1 A HIS 71 ? A HIS 7 8 1 Y 1 A HIS 72 ? A HIS 8 9 1 Y 1 A HIS 73 ? A HIS 9 10 1 Y 1 A HIS 74 ? A HIS 10 11 1 Y 1 A SER 75 ? A SER 11 12 1 Y 1 A SER 76 ? A SER 12 13 1 Y 1 A GLY 77 ? A GLY 13 14 1 Y 1 A LEU 78 ? A LEU 14 15 1 Y 1 A VAL 79 ? A VAL 15 16 1 Y 1 A PRO 80 ? A PRO 16 17 1 Y 1 A ARG 81 ? A ARG 17 18 1 Y 1 A GLY 82 ? A GLY 18 19 1 Y 1 A SER 83 ? A SER 19 20 1 Y 1 A HIS 84 ? A HIS 20 21 1 Y 1 A MET 85 ? A MET 21 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Fundacao para a Ciencia e a Tecnologia' Brazil 2017/17303-7 1 'Fundacao para a Ciencia e a Tecnologia' Brazil 2016/00458-5 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'BROMIDE ION' BR 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'R 3 :H' _space_group.name_Hall 'R 3' _space_group.IT_number 146 _space_group.crystal_system trigonal _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x+1/3,y+2/3,z+2/3 5 -y+1/3,x-y+2/3,z+2/3 6 -x+y+1/3,-x+2/3,z+2/3 7 x+2/3,y+1/3,z+1/3 8 -y+2/3,x-y+1/3,z+1/3 9 -x+y+2/3,-x+1/3,z+1/3 #