HEADER TRANSFERASE 19-JUN-19 6PDM TITLE CRYSTAL STRUCTURE OF HUMAN PROTEIN ARGININE METHYLTRANSFERASE 9 TITLE 2 (PRMT9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN ARGININE N-METHYLTRANSFERASE 10; COMPND 5 EC: 2.1.1.320; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT9, PRMT10; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.HALABELIAN,W.TEMPEL,H.ZENG,Y.LI,A.SEITOVA,A.HUTCHINSON,C.BOUNTRA, AUTHOR 2 A.M.EDWARDS,C.H.ARROWSMITH,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 11-OCT-23 6PDM 1 REMARK REVDAT 1 31-JUL-19 6PDM 0 JRNL AUTH L.HALABELIAN,W.TEMPEL,H.ZENG,Y.LI,A.SEITOVA,A.HUTCHINSON, JRNL AUTH 2 C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH JRNL TITL CRYSTAL STRUCTURE OF HUMAN PROTEIN ARGININE JRNL TITL 2 METHYLTRANSFERASE 9 (PRMT9) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 25460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1310 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2876 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2080 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2728 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.15 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.47800 REMARK 3 B22 (A**2) : -2.18130 REMARK 3 B33 (A**2) : 5.65930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 13.23930 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.380 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.370 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.256 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8784 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 15886 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1849 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 67 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1342 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8784 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 652 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9510 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.63 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: GEOMETRY RESTRAINED TO REMARK 3 PHENIX.ROSETTA_REFINE MODEL REMARK 4 REMARK 4 6PDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 65.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 1.20800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: PHENIX.MR_ROSETTA WITH PDB ENTRY 4C4A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M AMMONIUM NITRATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.90100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 126 REMARK 465 ALA A 127 REMARK 465 VAL A 128 REMARK 465 LYS A 129 REMARK 465 LEU A 130 REMARK 465 ASN A 131 REMARK 465 PRO A 132 REMARK 465 ASP A 133 REMARK 465 PHE A 134 REMARK 465 SER A 135 REMARK 465 ASP A 136 REMARK 465 ALA A 137 REMARK 465 LYS A 138 REMARK 465 GLU A 139 REMARK 465 ASN A 140 REMARK 465 PHE A 141 REMARK 465 TYR A 142 REMARK 465 ARG A 143 REMARK 465 VAL A 144 REMARK 465 ALA A 145 REMARK 465 ASN A 146 REMARK 465 TRP A 147 REMARK 465 LEU A 148 REMARK 465 VAL A 149 REMARK 465 LYS A 284 REMARK 465 GLY A 285 REMARK 465 GLU A 286 REMARK 465 SER A 287 REMARK 465 ALA A 288 REMARK 465 ASN A 289 REMARK 465 CYS A 290 REMARK 465 GLU A 291 REMARK 465 SER A 342 REMARK 465 VAL A 343 REMARK 465 ASP A 344 REMARK 465 THR A 345 REMARK 465 GLU A 346 REMARK 465 LEU A 474 REMARK 465 GLU A 475 REMARK 465 CYS A 476 REMARK 465 GLU A 477 REMARK 465 MET A 478 REMARK 465 ASP A 479 REMARK 465 VAL A 480 REMARK 465 ALA A 481 REMARK 465 LYS A 482 REMARK 465 SER A 483 REMARK 465 PHE A 484 REMARK 465 THR A 485 REMARK 465 GLN A 486 REMARK 465 ASN A 487 REMARK 465 LYS A 488 REMARK 465 ASP A 489 REMARK 465 LEU A 490 REMARK 465 LEU A 491 REMARK 465 SER A 492 REMARK 465 LEU A 493 REMARK 465 GLY A 494 REMARK 465 ASN A 495 REMARK 465 GLU A 496 REMARK 465 ALA A 497 REMARK 465 GLU A 498 REMARK 465 LEU A 499 REMARK 465 CYS A 500 REMARK 465 SER A 501 REMARK 465 ALA A 502 REMARK 465 LEU A 503 REMARK 465 ALA A 504 REMARK 465 ASN A 505 REMARK 465 LEU A 506 REMARK 465 GLN A 507 REMARK 465 THR A 508 REMARK 465 SER A 509 REMARK 465 LYS A 510 REMARK 465 PRO A 511 REMARK 465 ASP A 512 REMARK 465 ALA A 513 REMARK 465 VAL A 514 REMARK 465 GLN A 555 REMARK 465 THR A 556 REMARK 465 MET A 557 REMARK 465 ASP A 558 REMARK 465 THR A 559 REMARK 465 HIS A 560 REMARK 465 CYS A 561 REMARK 465 GLN A 562 REMARK 465 ASN A 563 REMARK 465 GLU A 564 REMARK 465 MET A 565 REMARK 465 SER A 566 REMARK 465 SER A 567 REMARK 465 GLY A 568 REMARK 465 THR A 569 REMARK 465 GLY A 570 REMARK 465 GLN A 571 REMARK 465 SER A 572 REMARK 465 ASN A 573 REMARK 465 THR A 574 REMARK 465 VAL A 575 REMARK 465 HIS A 639 REMARK 465 VAL A 640 REMARK 465 GLU A 641 REMARK 465 ASP A 642 REMARK 465 GLU A 643 REMARK 465 SER A 644 REMARK 465 ALA A 645 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 172 CD CE NZ REMARK 470 CYS A 175 SG REMARK 470 LYS A 197 CE NZ REMARK 470 SER A 202 OG REMARK 470 LEU A 208 CG CD1 CD2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LEU A 215 CG CD1 CD2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 THR A 234 OG1 CG2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 SER A 236 OG REMARK 470 LEU A 237 CG CD1 CD2 REMARK 470 ASP A 238 OD1 OD2 REMARK 470 GLU A 240 OE1 OE2 REMARK 470 ILE A 241 CG1 CG2 CD1 REMARK 470 PRO A 242 CG CD REMARK 470 LYS A 243 CE NZ REMARK 470 ILE A 245 CD1 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 GLU A 264 CD OE1 OE2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 GLN A 280 CG CD OE1 NE2 REMARK 470 LYS A 282 CD CE NZ REMARK 470 THR A 283 OG1 CG2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 SER A 300 OG REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 SER A 341 C O CB OG REMARK 470 GLU A 347 CG CD OE1 OE2 REMARK 470 ILE A 349 CG1 CG2 CD1 REMARK 470 GLU A 350 CD OE1 OE2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 GLU A 369 CG CD OE1 OE2 REMARK 470 GLU A 372 OE1 OE2 REMARK 470 GLN A 382 CG CD OE1 NE2 REMARK 470 LYS A 385 CE NZ REMARK 470 LYS A 390 CE NZ REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 ASP A 393 OD1 OD2 REMARK 470 LYS A 394 CD CE NZ REMARK 470 LYS A 401 CE NZ REMARK 470 ASP A 418 CG OD1 OD2 REMARK 470 GLU A 419 CD OE1 OE2 REMARK 470 GLU A 428 CG CD OE1 OE2 REMARK 470 GLU A 429 CG CD OE1 OE2 REMARK 470 ASP A 441 CG OD1 OD2 REMARK 470 ASP A 444 CG OD1 OD2 REMARK 470 LYS A 448 CE NZ REMARK 470 ASP A 451 OD1 OD2 REMARK 470 GLU A 456 CG CD OE1 OE2 REMARK 470 ASP A 461 CG OD1 OD2 REMARK 470 CYS A 462 SG REMARK 470 SER A 468 OG REMARK 470 VAL A 471 CG1 CG2 REMARK 470 GLU A 515 CG CD OE1 OE2 REMARK 470 GLU A 535 OE1 OE2 REMARK 470 LYS A 538 CE NZ REMARK 470 MET A 539 CG SD CE REMARK 470 LEU A 545 CD1 CD2 REMARK 470 THR A 549 OG1 CG2 REMARK 470 GLU A 551 CG CD OE1 OE2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 GLN A 576 CG CD OE1 NE2 REMARK 470 ILE A 578 CG1 CG2 CD1 REMARK 470 LEU A 579 CG CD1 CD2 REMARK 470 GLU A 580 CD OE1 OE2 REMARK 470 GLU A 589 CG CD OE1 OE2 REMARK 470 GLU A 611 CG CD OE1 OE2 REMARK 470 LYS A 612 CE NZ REMARK 470 ASP A 613 CG OD1 OD2 REMARK 470 ARG A 616 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 624 CG CD OE1 OE2 REMARK 470 LYS A 630 CG CD CE NZ REMARK 470 LEU A 637 CG CD1 CD2 REMARK 470 ARG A 638 C O CB CG CD NE CZ REMARK 470 ARG A 638 NH1 NH2 REMARK 470 MET A 646 CG SD CE REMARK 470 LYS A 651 CG CD CE NZ REMARK 470 SER A 652 OG REMARK 470 ASP A 653 CG OD1 OD2 REMARK 470 GLU A 673 CG CD OE1 OE2 REMARK 470 ILE A 674 CG1 CD1 REMARK 470 GLU A 676 CG CD OE1 OE2 REMARK 470 LYS A 677 NZ REMARK 470 GLN A 686 OE1 NE2 REMARK 470 SER A 687 OG REMARK 470 LYS A 690 CD CE NZ REMARK 470 THR A 717 OG1 CG2 REMARK 470 GLU A 718 CG CD OE1 OE2 REMARK 470 ASN A 724 OD1 ND2 REMARK 470 ILE A 729 CG1 CD1 REMARK 470 GLN A 731 CD OE1 NE2 REMARK 470 GLN A 733 CD OE1 NE2 REMARK 470 TYR A 765 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 766 CG CD1 CD2 REMARK 470 SER A 769 OG REMARK 470 ASN A 770 OD1 ND2 REMARK 470 GLU A 772 CG CD OE1 OE2 REMARK 470 LYS A 774 CG CD CE NZ REMARK 470 ARG A 782 CD NE CZ NH1 NH2 REMARK 470 GLU A 796 CG CD OE1 OE2 REMARK 470 GLU A 797 CG CD OE1 OE2 REMARK 470 GLU A 805 CG CD OE1 OE2 REMARK 470 VAL A 815 CG1 CG2 REMARK 470 ASP A 817 CG OD1 OD2 REMARK 470 ASN A 818 OD1 ND2 REMARK 470 GLU A 823 CG CD OE1 OE2 REMARK 470 GLU A 827 OE1 OE2 REMARK 470 GLN A 833 CD OE1 NE2 REMARK 470 HIS A 835 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 836 CG CD CE NZ REMARK 470 SER A 837 OG REMARK 470 VAL A 843 CG1 CG2 REMARK 470 LYS A 844 CG CD CE NZ REMARK 470 GLN A 845 C O CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 242 -56.36 46.52 REMARK 500 LEU A 261 -64.54 67.84 REMARK 500 CYS A 310 94.73 -161.67 REMARK 500 ALA A 339 49.71 -91.34 REMARK 500 ILE A 349 -71.07 -68.91 REMARK 500 ASP A 441 41.71 72.98 REMARK 500 ASP A 461 64.03 -102.30 REMARK 500 CYS A 462 -17.82 65.87 REMARK 500 ASN A 577 108.54 -163.15 REMARK 500 PHE A 732 71.18 -100.07 REMARK 500 LYS A 836 -116.26 58.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 241 -12.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 6PDM A 127 845 UNP Q6P2P2 ANM9_HUMAN 127 845 SEQADV 6PDM GLY A 126 UNP Q6P2P2 EXPRESSION TAG SEQRES 1 A 720 GLY ALA VAL LYS LEU ASN PRO ASP PHE SER ASP ALA LYS SEQRES 2 A 720 GLU ASN PHE TYR ARG VAL ALA ASN TRP LEU VAL GLU ARG SEQRES 3 A 720 TRP HIS PHE ILE MET LEU ASN ASP THR LYS ARG ASN THR SEQRES 4 A 720 ILE TYR ASN ALA ALA ILE GLN LYS ALA VAL CYS LEU GLY SEQRES 5 A 720 SER LYS SER VAL LEU ASP ILE GLY ALA GLY THR GLY ILE SEQRES 6 A 720 LEU SER MET PHE ALA LYS LYS ALA GLY ALA HIS SER VAL SEQRES 7 A 720 TYR ALA CYS GLU LEU SER LYS THR MET TYR GLU LEU ALA SEQRES 8 A 720 CYS ASP VAL VAL ALA ALA ASN LYS MET GLU ALA GLY ILE SEQRES 9 A 720 LYS LEU LEU HIS THR LYS SER LEU ASP ILE GLU ILE PRO SEQRES 10 A 720 LYS HIS ILE PRO GLU ARG VAL SER LEU VAL VAL THR GLU SEQRES 11 A 720 THR VAL ASP ALA GLY LEU PHE GLY GLU GLY ILE VAL GLU SEQRES 12 A 720 SER LEU ILE HIS ALA TRP GLU HIS LEU LEU LEU GLN PRO SEQRES 13 A 720 LYS THR LYS GLY GLU SER ALA ASN CYS GLU LYS TYR GLY SEQRES 14 A 720 LYS VAL ILE PRO ALA SER ALA VAL ILE PHE GLY MET ALA SEQRES 15 A 720 VAL GLU CYS ALA GLU ILE ARG ARG HIS HIS ARG VAL GLY SEQRES 16 A 720 ILE LYS ASP ILE ALA GLY ILE HIS LEU PRO THR ASN VAL SEQRES 17 A 720 LYS PHE GLN SER PRO ALA TYR SER SER VAL ASP THR GLU SEQRES 18 A 720 GLU THR ILE GLU PRO TYR THR THR GLU LYS MET SER ARG SEQRES 19 A 720 VAL PRO GLY GLY TYR LEU ALA LEU THR GLU CYS PHE GLU SEQRES 20 A 720 ILE MET THR VAL ASP PHE ASN ASN LEU GLN GLU LEU LYS SEQRES 21 A 720 SER LEU ALA THR LYS LYS PRO ASP LYS ILE GLY ILE PRO SEQRES 22 A 720 VAL ILE LYS GLU GLY ILE LEU ASP ALA ILE MET VAL TRP SEQRES 23 A 720 PHE VAL LEU GLN LEU ASP ASP GLU HIS SER LEU SER THR SEQRES 24 A 720 SER PRO SER GLU GLU THR CYS TRP GLU GLN ALA VAL TYR SEQRES 25 A 720 PRO VAL GLN ASP LEU ALA ASP TYR TRP ILE LYS PRO GLY SEQRES 26 A 720 ASP HIS VAL MET MET GLU VAL SER CYS GLN ASP CYS TYR SEQRES 27 A 720 LEU ARG ILE GLN SER ILE SER VAL LEU GLY LEU GLU CYS SEQRES 28 A 720 GLU MET ASP VAL ALA LYS SER PHE THR GLN ASN LYS ASP SEQRES 29 A 720 LEU LEU SER LEU GLY ASN GLU ALA GLU LEU CYS SER ALA SEQRES 30 A 720 LEU ALA ASN LEU GLN THR SER LYS PRO ASP ALA VAL GLU SEQRES 31 A 720 GLN THR CYS ILE LEU GLU SER THR GLU ILE ALA LEU LEU SEQRES 32 A 720 ASN ASN ILE PRO TYR HIS GLU GLY PHE LYS MET ALA MET SEQRES 33 A 720 SER LYS VAL LEU SER SER LEU THR PRO GLU LYS LEU TYR SEQRES 34 A 720 GLN THR MET ASP THR HIS CYS GLN ASN GLU MET SER SER SEQRES 35 A 720 GLY THR GLY GLN SER ASN THR VAL GLN ASN ILE LEU GLU SEQRES 36 A 720 PRO PHE TYR VAL LEU ASP VAL SER GLU GLY PHE SER VAL SEQRES 37 A 720 LEU PRO VAL ILE ALA GLY THR LEU GLY GLN VAL LYS PRO SEQRES 38 A 720 TYR SER SER VAL GLU LYS ASP GLN HIS ARG ILE ALA LEU SEQRES 39 A 720 ASP LEU ILE SER GLU ALA ASN HIS PHE PRO LYS GLU THR SEQRES 40 A 720 LEU GLU PHE TRP LEU ARG HIS VAL GLU ASP GLU SER ALA SEQRES 41 A 720 MET LEU GLN ARG PRO LYS SER ASP LYS LEU TRP SER ILE SEQRES 42 A 720 ILE ILE LEU ASP VAL ILE GLU PRO SER GLY LEU ILE GLN SEQRES 43 A 720 GLN GLU ILE MET GLU LYS ALA ALA ILE SER ARG CYS LEU SEQRES 44 A 720 LEU GLN SER GLY GLY LYS ILE PHE PRO GLN TYR VAL LEU SEQRES 45 A 720 MET PHE GLY LEU LEU VAL GLU SER GLN THR LEU LEU GLU SEQRES 46 A 720 GLU ASN ALA VAL GLN GLY THR GLU ARG THR LEU GLY LEU SEQRES 47 A 720 ASN ILE ALA PRO PHE ILE ASN GLN PHE GLN VAL PRO ILE SEQRES 48 A 720 ARG VAL PHE LEU ASP LEU SER SER LEU PRO CYS ILE PRO SEQRES 49 A 720 LEU SER LYS PRO VAL GLU LEU LEU ARG LEU ASP LEU MET SEQRES 50 A 720 THR PRO TYR LEU ASN THR SER ASN ARG GLU VAL LYS VAL SEQRES 51 A 720 TYR VAL CYS LYS SER GLY ARG LEU THR ALA ILE PRO PHE SEQRES 52 A 720 TRP TYR HIS MET TYR LEU ASP GLU GLU ILE ARG LEU ASP SEQRES 53 A 720 THR SER SER GLU ALA SER HIS TRP LYS GLN ALA ALA VAL SEQRES 54 A 720 VAL LEU ASP ASN PRO ILE GLN VAL GLU MET GLY GLU GLU SEQRES 55 A 720 LEU VAL LEU SER ILE GLN HIS HIS LYS SER ASN VAL SER SEQRES 56 A 720 ILE THR VAL LYS GLN HET UNX A 901 1 HET UNX A 902 1 HET UNX A 903 1 HET UNX A 904 1 HET UNX A 905 1 HET UNX A 906 1 HET UNX A 907 1 HET UNX A 908 1 HET UNX A 909 1 HET UNX A 910 1 HET UNX A 911 1 HET UNX A 912 1 HET UNX A 913 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 UNX 13(X) HELIX 1 AA1 GLU A 150 ASP A 159 1 10 HELIX 2 AA2 ASP A 159 LEU A 176 1 18 HELIX 3 AA3 GLY A 189 GLY A 199 1 11 HELIX 4 AA4 SER A 209 ASN A 223 1 15 HELIX 5 AA5 LYS A 235 ILE A 239 5 5 HELIX 6 AA6 LEU A 261 GLU A 264 5 4 HELIX 7 AA7 GLY A 265 LEU A 277 1 13 HELIX 8 AA8 CYS A 310 ARG A 318 1 9 HELIX 9 AA9 LYS A 356 VAL A 360 5 5 HELIX 10 AB1 ASN A 380 LEU A 387 1 8 HELIX 11 AB2 GLU A 521 ASN A 530 1 10 HELIX 12 AB3 ASN A 530 THR A 549 1 20 HELIX 13 AB4 PRO A 550 LEU A 553 5 4 HELIX 14 AB5 VAL A 593 THR A 600 1 8 HELIX 15 AB6 LYS A 612 ASN A 626 1 15 HELIX 16 AB7 GLU A 673 CYS A 683 1 11 HELIX 17 AB8 SER A 705 ALA A 713 1 9 HELIX 18 AB9 ILE A 725 ASN A 730 1 6 HELIX 19 AC1 ASP A 741 LEU A 745 5 5 HELIX 20 AC2 THR A 763 ASN A 767 5 5 SHEET 1 AA1 5 ILE A 229 LEU A 232 0 SHEET 2 AA1 5 SER A 202 CYS A 206 1 N ALA A 205 O LEU A 232 SHEET 3 AA1 5 SER A 180 ILE A 184 1 N ASP A 183 O TYR A 204 SHEET 4 AA1 5 LEU A 251 THR A 254 1 O VAL A 253 N ILE A 184 SHEET 5 AA1 5 LYS A 295 ILE A 297 1 O ILE A 297 N VAL A 252 SHEET 1 AA2 5 THR A 353 GLU A 355 0 SHEET 2 AA2 5 GLN A 434 PRO A 438 -1 O VAL A 436 N THR A 353 SHEET 3 AA2 5 ALA A 407 ASP A 417 -1 N VAL A 410 O ALA A 435 SHEET 4 AA2 5 SER A 300 GLU A 309 -1 N MET A 306 O MET A 409 SHEET 5 AA2 5 PHE A 371 ASP A 377 -1 O MET A 374 N ILE A 303 SHEET 1 AA3 4 LEU A 365 ALA A 366 0 SHEET 2 AA3 4 SER A 300 GLU A 309 -1 N GLU A 309 O LEU A 365 SHEET 3 AA3 4 ALA A 407 ASP A 417 -1 O MET A 409 N MET A 306 SHEET 4 AA3 4 HIS A 420 SER A 423 -1 O LEU A 422 N LEU A 414 SHEET 1 AA4 2 ASP A 323 ILE A 324 0 SHEET 2 AA4 2 ILE A 327 HIS A 328 -1 O ILE A 327 N ILE A 324 SHEET 1 AA5 2 VAL A 333 GLN A 336 0 SHEET 2 AA5 2 GLN A 516 ILE A 519 1 O CYS A 518 N LYS A 334 SHEET 1 AA6 3 ASP A 393 PRO A 398 0 SHEET 2 AA6 3 HIS A 452 SER A 458 -1 O VAL A 457 N ASP A 393 SHEET 3 AA6 3 ARG A 465 SER A 470 -1 O ARG A 465 N SER A 458 SHEET 1 AA7 2 GLY A 403 ILE A 404 0 SHEET 2 AA7 2 TRP A 446 ILE A 447 -1 O ILE A 447 N GLY A 403 SHEET 1 AA8 5 GLU A 634 PHE A 635 0 SHEET 2 AA8 5 VAL A 604 SER A 608 1 N SER A 608 O GLU A 634 SHEET 3 AA8 5 PHE A 582 VAL A 587 1 N PHE A 582 O LYS A 605 SHEET 4 AA8 5 TRP A 656 LEU A 661 1 O SER A 657 N TYR A 583 SHEET 5 AA8 5 LEU A 685 PHE A 692 1 O PHE A 692 N LEU A 661 SHEET 1 AA9 5 ILE A 736 LEU A 740 0 SHEET 2 AA9 5 GLN A 811 VAL A 822 -1 O GLN A 811 N LEU A 740 SHEET 3 AA9 5 GLY A 781 TYR A 793 -1 N GLY A 781 O VAL A 822 SHEET 4 AA9 5 TYR A 695 GLY A 700 -1 N TYR A 695 O TYR A 793 SHEET 5 AA9 5 VAL A 754 ASP A 760 -1 O LEU A 756 N MET A 698 SHEET 1 AB1 4 ILE A 736 LEU A 740 0 SHEET 2 AB1 4 GLN A 811 VAL A 822 -1 O GLN A 811 N LEU A 740 SHEET 3 AB1 4 GLY A 781 TYR A 793 -1 N GLY A 781 O VAL A 822 SHEET 4 AB1 4 ARG A 799 ASP A 801 -1 O LEU A 800 N MET A 792 SHEET 1 AB2 2 VAL A 703 GLU A 704 0 SHEET 2 AB2 2 ILE A 748 PRO A 749 -1 O ILE A 748 N GLU A 704 SHEET 1 AB3 3 ASN A 770 TYR A 776 0 SHEET 2 AB3 3 GLU A 827 HIS A 835 -1 O LEU A 828 N VAL A 775 SHEET 3 AB3 3 ASN A 838 VAL A 843 -1 O THR A 842 N SER A 831 CISPEP 1 ILE A 297 PRO A 298 0 -1.20 CISPEP 2 PHE A 692 PRO A 693 0 -8.94 CRYST1 64.812 83.802 65.711 90.00 98.16 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015429 0.000000 0.002212 0.00000 SCALE2 0.000000 0.011933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015374 0.00000