HEADER TRANSFERASE 20-JUN-19 6PED TITLE CRYSTAL STRUCTURE OF HEMK2-TRMT112 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTRANSFERASE N6AMT1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEMK METHYLTRANSFERASE FAMILY MEMBER 2,M.HSAHEMK2P, COMPND 5 METHYLARSONITE METHYLTRANSFERASE N6AMT1,N(6)-ADENINE-SPECIFIC DNA COMPND 6 METHYLTRANSFERASE 1,PROTEIN N(5)-GLUTAMINE METHYLTRANSFERASE; COMPND 7 EC: 2.1.1.-,2.1.1.72; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MULTIFUNCTIONAL METHYLTRANSFERASE SUBUNIT TRM112-LIKE COMPND 11 PROTEIN; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: TRNA METHYLTRANSFERASE 112 HOMOLOG; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: N6AMT1, C21ORF127, HEMK2, PRED28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -V3R; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: TRMT112, AD-001, HSPC152, HSPC170; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VARIANT: -V3R; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET15A-MHL KEYWDS METHYLTRANSFERASE, COMPLEX, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 2 11-OCT-23 6PED 1 REMARK REVDAT 1 03-JUL-19 6PED 0 JRNL AUTH C.DONG,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN JRNL TITL CRYSTAL STRUCTURE OF HEMK2-TRMT112 COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1151 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1473 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 1.70000 REMARK 3 B12 (A**2) : -0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.252 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2413 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2264 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3299 ; 1.829 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5222 ; 1.397 ; 1.557 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 7.537 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;30.257 ;22.588 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;14.470 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.806 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2691 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 459 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY. AUTHORS ARE UNSURE REMARK 3 ABOUT THE IDENTITY OF THE LIGAND THAT IS CURRENTLY MODELED AS REMARK 3 SAH. WEAK DIFFERENCE DENSITY SUGGESTS THAT THE BINDING SITE MAY REMARK 3 BE OCCUPIED ATERNATELY BY SAH OR SAM. REMARK 4 REMARK 4 6PED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21722 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 19.30 REMARK 200 R MERGE FOR SHELL (I) : 1.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: ISOMORPHOUS PDB ENTRY 6K0X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M SODIUM/POTASSIUM PHOSPHATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.99067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.98133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.98600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.97667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.99533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.99067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.98133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.97667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.98600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.99533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 PHE A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 PHE A 10 REMARK 465 HIS A 11 REMARK 465 GLY A 12 REMARK 465 HIS A 13 REMARK 465 VAL A 14 REMARK 465 GLY A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 PHE A 19 REMARK 465 SER A 20 REMARK 465 MET B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 GLU B 124 REMARK 465 SER B 125 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 21 CG OD1 OD2 REMARK 470 GLU A 37 CD OE1 OE2 REMARK 470 GLU A 42 OE1 OE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 LYS A 106 CE NZ REMARK 470 GLN A 131 CG CD OE1 NE2 REMARK 470 GLU A 132 OE1 OE2 REMARK 470 SER A 135 OG REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 175 CD CE NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LYS A 187 CE NZ REMARK 470 GLN A 192 CD OE1 NE2 REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 LYS A 210 NZ REMARK 470 SER A 214 CA C O CB OG REMARK 470 TYR B -3 N CB CG CD1 CD2 CE1 CE2 REMARK 470 TYR B -3 CZ OH REMARK 470 PHE B -2 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B -1 CD OE1 NE2 REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 19 NH1 NH2 REMARK 470 ARG B 24 NE CZ NH1 NH2 REMARK 470 GLU B 29 CD OE1 OE2 REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 CYS B 33 SG REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 ASN B 40 CG OD1 ND2 REMARK 470 LYS B 48 NZ REMARK 470 GLU B 56 CD OE1 OE2 REMARK 470 ARG B 62 NE CZ NH1 NH2 REMARK 470 GLN B 65 CG CD OE1 NE2 REMARK 470 LYS B 68 CE NZ REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 GLU B 76 CD OE1 OE2 REMARK 470 GLU B 78 CD OE1 OE2 REMARK 470 GLU B 79 CD OE1 OE2 REMARK 470 SER B 110 OG REMARK 470 ARG B 111 CD NE CZ NH1 NH2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 THR B 123 CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 104 -104.57 57.54 REMARK 500 ASN A 178 64.68 72.30 REMARK 500 THR A 188 -7.02 -56.02 REMARK 500 LEU A 197 138.18 -173.36 REMARK 500 GLU B 72 120.54 -34.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6K0X RELATED DB: PDB REMARK 900 ISOMORPHOUS STARTING MODEL DBREF 6PED A 1 214 UNP Q9Y5N5 N6MT1_HUMAN 1 214 DBREF 6PED B 1 125 UNP Q9UI30 TR112_HUMAN 1 125 SEQADV 6PED MET A -18 UNP Q9Y5N5 INITIATING METHIONINE SEQADV 6PED GLY A -17 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED SER A -16 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED SER A -15 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED HIS A -14 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED HIS A -13 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED HIS A -12 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED HIS A -11 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED HIS A -10 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED HIS A -9 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED SER A -8 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED SER A -7 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED GLY A -6 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED LEU A -5 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED VAL A -4 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED PRO A -3 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED ARG A -2 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED GLY A -1 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED SER A 0 UNP Q9Y5N5 EXPRESSION TAG SEQADV 6PED MET B -17 UNP Q9UI30 INITIATING METHIONINE SEQADV 6PED HIS B -16 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED HIS B -15 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED HIS B -14 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED HIS B -13 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED HIS B -12 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED HIS B -11 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED SER B -10 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED SER B -9 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED GLY B -8 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED ARG B -7 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED GLU B -6 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED ASN B -5 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED LEU B -4 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED TYR B -3 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED PHE B -2 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED GLN B -1 UNP Q9UI30 EXPRESSION TAG SEQADV 6PED GLY B 0 UNP Q9UI30 EXPRESSION TAG SEQRES 1 A 233 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 233 LEU VAL PRO ARG GLY SER MET ALA GLY GLU ASN PHE ALA SEQRES 3 A 233 THR PRO PHE HIS GLY HIS VAL GLY ARG GLY ALA PHE SER SEQRES 4 A 233 ASP VAL TYR GLU PRO ALA GLU ASP THR PHE LEU LEU LEU SEQRES 5 A 233 ASP ALA LEU GLU ALA ALA ALA ALA GLU LEU ALA GLY VAL SEQRES 6 A 233 GLU ILE CYS LEU GLU VAL GLY SER GLY SER GLY VAL VAL SEQRES 7 A 233 SER ALA PHE LEU ALA SER MET ILE GLY PRO GLN ALA LEU SEQRES 8 A 233 TYR MET CYS THR ASP ILE ASN PRO GLU ALA ALA ALA CYS SEQRES 9 A 233 THR LEU GLU THR ALA ARG CYS ASN LYS VAL HIS ILE GLN SEQRES 10 A 233 PRO VAL ILE THR ASP LEU VAL LYS GLY LEU LEU PRO ARG SEQRES 11 A 233 LEU THR GLU LYS VAL ASP LEU LEU VAL PHE ASN PRO PRO SEQRES 12 A 233 TYR VAL VAL THR PRO PRO GLN GLU VAL GLY SER HIS GLY SEQRES 13 A 233 ILE GLU ALA ALA TRP ALA GLY GLY ARG ASN GLY ARG GLU SEQRES 14 A 233 VAL MET ASP ARG PHE PHE PRO LEU VAL PRO ASP LEU LEU SEQRES 15 A 233 SER PRO ARG GLY LEU PHE TYR LEU VAL THR ILE LYS GLU SEQRES 16 A 233 ASN ASN PRO GLU GLU ILE LEU LYS ILE MET LYS THR LYS SEQRES 17 A 233 GLY LEU GLN GLY THR THR ALA LEU SER ARG GLN ALA GLY SEQRES 18 A 233 GLN GLU THR LEU SER VAL LEU LYS PHE THR LYS SER SEQRES 1 B 143 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 143 LEU TYR PHE GLN GLY MET LYS LEU LEU THR HIS ASN LEU SEQRES 3 B 143 LEU SER SER HIS VAL ARG GLY VAL GLY SER ARG GLY PHE SEQRES 4 B 143 PRO LEU ARG LEU GLN ALA THR GLU VAL ARG ILE CYS PRO SEQRES 5 B 143 VAL GLU PHE ASN PRO ASN PHE VAL ALA ARG MET ILE PRO SEQRES 6 B 143 LYS VAL GLU TRP SER ALA PHE LEU GLU ALA ALA ASP ASN SEQRES 7 B 143 LEU ARG LEU ILE GLN VAL PRO LYS GLY PRO VAL GLU GLY SEQRES 8 B 143 TYR GLU GLU ASN GLU GLU PHE LEU ARG THR MET HIS HIS SEQRES 9 B 143 LEU LEU LEU GLU VAL GLU VAL ILE GLU GLY THR LEU GLN SEQRES 10 B 143 CYS PRO GLU SER GLY ARG MET PHE PRO ILE SER ARG GLY SEQRES 11 B 143 ILE PRO ASN MET LEU LEU SER GLU GLU GLU THR GLU SER HET SAH A 301 26 HET UNX A 302 1 HET UNX A 303 1 HET UNX A 304 1 HET UNX A 305 1 HET UNX A 306 1 HET UNX A 307 1 HET UNX A 308 1 HET UNX B 201 1 HET UNX B 202 1 HET UNX B 203 1 HET UNX B 204 1 HET UNX B 205 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 UNX 12(X) HELIX 1 AA1 ALA A 26 ALA A 38 1 13 HELIX 2 AA2 ALA A 39 ALA A 44 5 6 HELIX 3 AA3 GLY A 57 GLY A 68 1 12 HELIX 4 AA4 ASN A 79 LYS A 94 1 16 HELIX 5 AA5 PRO A 129 VAL A 133 5 5 HELIX 6 AA6 ILE A 138 TRP A 142 5 5 HELIX 7 AA7 GLY A 145 GLY A 148 5 4 HELIX 8 AA8 ARG A 149 PHE A 156 1 8 HELIX 9 AA9 LEU A 158 LEU A 162 1 5 HELIX 10 AB1 ASN A 178 THR A 188 1 11 HELIX 11 AB2 LEU B 3 ASN B 7 1 5 HELIX 12 AB3 ASN B 38 ILE B 46 1 9 HELIX 13 AB4 PRO B 47 VAL B 49 5 3 HELIX 14 AB5 GLU B 50 LEU B 61 1 12 HELIX 15 AB6 GLY B 73 GLU B 76 5 4 HELIX 16 AB7 ASN B 77 GLU B 90 1 14 SHEET 1 AA1 7 GLN A 98 ILE A 101 0 SHEET 2 AA1 7 LEU A 72 ASP A 77 1 N TYR A 73 O GLN A 98 SHEET 3 AA1 7 ILE A 48 VAL A 52 1 N CYS A 49 O LEU A 72 SHEET 4 AA1 7 VAL A 116 PHE A 121 1 O VAL A 120 N VAL A 52 SHEET 5 AA1 7 LEU A 163 ILE A 174 1 O LEU A 168 N LEU A 119 SHEET 6 AA1 7 GLU A 204 THR A 212 -1 O PHE A 211 N PHE A 169 SHEET 7 AA1 7 GLN A 192 ALA A 201 -1 N ARG A 199 O LEU A 206 SHEET 1 AA2 3 MET B 1 LYS B 2 0 SHEET 2 AA2 3 VAL B 91 GLN B 99 -1 O VAL B 93 N MET B 1 SHEET 3 AA2 3 ARG B 24 ILE B 32 -1 N GLN B 26 O THR B 97 SHEET 1 AA3 4 MET B 1 LYS B 2 0 SHEET 2 AA3 4 VAL B 91 GLN B 99 -1 O VAL B 93 N MET B 1 SHEET 3 AA3 4 MET B 106 SER B 110 -1 O ILE B 109 N GLY B 96 SHEET 4 AA3 4 ILE B 113 PRO B 114 -1 O ILE B 113 N SER B 110 CISPEP 1 LEU A 109 PRO A 110 0 2.63 CISPEP 2 PHE B 21 PRO B 22 0 -7.55 SITE 1 AC1 14 TYR A 23 THR A 29 GLU A 51 GLY A 53 SITE 2 AC1 14 SER A 54 GLY A 55 ASP A 77 ILE A 78 SITE 3 AC1 14 ASP A 103 LEU A 104 ASN A 122 PRO A 124 SITE 4 AC1 14 ALA A 140 ALA A 141 CRYST1 110.539 110.539 131.972 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009047 0.005223 0.000000 0.00000 SCALE2 0.000000 0.010446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007577 0.00000