HEADER SIGNALING PROTEIN 20-JUN-19 6PEL TITLE CRYSTAL STRUCTURE OF BOVINE OPSIN WITH CITRONELLOL BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ILENLKDVGLF G ALPHA PEPTIDE CT2; COMPND 6 CHAIN: B; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_TAXID: 9913 KEYWDS OLFACTORY RECEPTOR, ODORANT, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.T.EGER,T.MORIZUMI,O.P.ERNST REVDAT 3 11-OCT-23 6PEL 1 REMARK HETSYN LINK REVDAT 2 29-JUL-20 6PEL 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 24-JUN-20 6PEL 0 JRNL AUTH T.MORIZUMI,K.KUROI,B.T.EGER,W.L.OU,N.VAN EPS,H.TSUKAMOTO, JRNL AUTH 2 Y.FURUTANI,O.P.ERNST JRNL TITL ODORANT-BINDING SITE IN VISUAL OPSIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7587 - 6.0889 1.00 2862 154 0.2291 0.2626 REMARK 3 2 6.0889 - 4.8356 1.00 2805 144 0.2251 0.2347 REMARK 3 3 4.8356 - 4.2252 1.00 2790 156 0.1703 0.2256 REMARK 3 4 4.2252 - 3.8392 1.00 2767 153 0.1874 0.2305 REMARK 3 5 3.8392 - 3.5642 1.00 2776 154 0.1967 0.2395 REMARK 3 6 3.5642 - 3.3542 1.00 2760 140 0.2282 0.2661 REMARK 3 7 3.3542 - 3.1863 1.00 2778 146 0.2816 0.3140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2872 REMARK 3 ANGLE : 0.834 3907 REMARK 3 CHIRALITY : 0.045 445 REMARK 3 PLANARITY : 0.006 473 REMARK 3 DIHEDRAL : 14.358 1730 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 2:139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0328 41.5946 39.3316 REMARK 3 T TENSOR REMARK 3 T11: 0.6758 T22: 0.6556 REMARK 3 T33: 0.7215 T12: 0.0589 REMARK 3 T13: -0.0429 T23: 0.0657 REMARK 3 L TENSOR REMARK 3 L11: 1.9082 L22: 3.5676 REMARK 3 L33: 1.2172 L12: 1.4161 REMARK 3 L13: 0.1584 L23: -0.0025 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: 0.0282 S13: 0.0553 REMARK 3 S21: -0.2596 S22: 0.0231 S23: -0.6726 REMARK 3 S31: -0.1055 S32: 0.0485 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 140:168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1196 26.0406 24.1755 REMARK 3 T TENSOR REMARK 3 T11: 1.1207 T22: 0.5848 REMARK 3 T33: 1.2664 T12: -0.1102 REMARK 3 T13: 0.0758 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.8397 L22: 0.4098 REMARK 3 L33: 0.0512 L12: 1.0035 REMARK 3 L13: -0.2981 L23: 0.1583 REMARK 3 S TENSOR REMARK 3 S11: -0.4074 S12: 1.2914 S13: -2.0890 REMARK 3 S21: -0.8880 S22: 0.2683 S23: 0.1185 REMARK 3 S31: 1.2988 S32: -0.3528 S33: 0.0217 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 169:222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5645 49.5548 29.7779 REMARK 3 T TENSOR REMARK 3 T11: 0.8645 T22: 0.6475 REMARK 3 T33: 0.7968 T12: 0.0614 REMARK 3 T13: -0.1184 T23: 0.1543 REMARK 3 L TENSOR REMARK 3 L11: 3.0353 L22: 0.3723 REMARK 3 L33: 2.7884 L12: 0.7759 REMARK 3 L13: -0.0946 L23: -0.1831 REMARK 3 S TENSOR REMARK 3 S11: -0.2175 S12: 0.4133 S13: 1.6918 REMARK 3 S21: -0.6463 S22: 0.2140 S23: -0.6318 REMARK 3 S31: -0.8885 S32: 0.5008 S33: 0.1396 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 223:287 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8218 35.0181 41.2007 REMARK 3 T TENSOR REMARK 3 T11: 0.5912 T22: 0.7102 REMARK 3 T33: 0.7108 T12: 0.0534 REMARK 3 T13: -0.1297 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 4.7967 L22: 2.1766 REMARK 3 L33: 3.7553 L12: -2.4273 REMARK 3 L13: -1.0324 L23: -1.1448 REMARK 3 S TENSOR REMARK 3 S11: 0.1026 S12: 0.0079 S13: 0.5178 REMARK 3 S21: 0.5064 S22: -0.3118 S23: 0.7086 REMARK 3 S31: 0.0112 S32: -0.2334 S33: -0.0016 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 288:326 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2361 27.4544 46.0492 REMARK 3 T TENSOR REMARK 3 T11: 1.0378 T22: 0.8448 REMARK 3 T33: 1.2963 T12: 0.0178 REMARK 3 T13: -0.0762 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.6620 L22: -0.0248 REMARK 3 L33: 1.2128 L12: 0.1655 REMARK 3 L13: 2.2452 L23: 0.1521 REMARK 3 S TENSOR REMARK 3 S11: -0.1607 S12: 0.0135 S13: 0.0853 REMARK 3 S21: 0.4704 S22: 0.1803 S23: 0.5187 REMARK 3 S31: -0.2089 S32: -0.3419 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 340:344 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7716 13.8745 36.6946 REMARK 3 T TENSOR REMARK 3 T11: 1.5376 T22: 1.3625 REMARK 3 T33: 2.0462 T12: -0.0136 REMARK 3 T13: 0.0560 T23: 0.2894 REMARK 3 L TENSOR REMARK 3 L11: 0.0059 L22: 0.0055 REMARK 3 L33: 0.0933 L12: 0.0041 REMARK 3 L13: -0.0375 L23: -0.0446 REMARK 3 S TENSOR REMARK 3 S11: -0.4648 S12: 1.7841 S13: -1.1236 REMARK 3 S21: -0.8885 S22: 0.0037 S23: -0.7892 REMARK 3 S31: 0.6185 S32: 1.8265 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 345:350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5441 16.8390 39.4239 REMARK 3 T TENSOR REMARK 3 T11: 1.3309 T22: 1.1893 REMARK 3 T33: 1.3909 T12: -0.1635 REMARK 3 T13: -0.0590 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.0410 L22: 0.0376 REMARK 3 L33: 0.0366 L12: 0.0299 REMARK 3 L13: 0.0113 L23: -0.0515 REMARK 3 S TENSOR REMARK 3 S11: 0.1416 S12: -0.8594 S13: -0.4425 REMARK 3 S21: 0.0552 S22: 0.8034 S23: -0.0576 REMARK 3 S31: 1.2176 S32: 0.5963 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20603 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.186 REMARK 200 RESOLUTION RANGE LOW (A) : 39.756 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 84.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.1-3.3M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE BUFFER, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 121.70600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.26699 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.14667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 121.70600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 70.26699 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.14667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 121.70600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 70.26699 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.14667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 121.70600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 70.26699 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.14667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 121.70600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 70.26699 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 36.14667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 121.70600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 70.26699 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.14667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 140.53398 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 72.29333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 140.53398 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 72.29333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 140.53398 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 72.29333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 140.53398 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.29333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 140.53398 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 72.29333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 140.53398 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 72.29333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 327 REMARK 465 LEU A 328 REMARK 465 GLY A 329 REMARK 465 ASP A 330 REMARK 465 ASP A 331 REMARK 465 GLU A 332 REMARK 465 ALA A 333 REMARK 465 SER A 334 REMARK 465 THR A 335 REMARK 465 THR A 336 REMARK 465 VAL A 337 REMARK 465 SER A 338 REMARK 465 LYS A 339 REMARK 465 THR A 340 REMARK 465 GLU A 341 REMARK 465 THR A 342 REMARK 465 SER A 343 REMARK 465 GLN A 344 REMARK 465 VAL A 345 REMARK 465 ALA A 346 REMARK 465 PRO A 347 REMARK 465 ALA A 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 166 OH TYR A 206 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 108.56 -161.58 REMARK 500 GLU A 25 -30.91 -133.60 REMARK 500 GLN A 28 39.61 -99.41 REMARK 500 ALA A 32 137.48 -174.08 REMARK 500 ARG A 69 48.20 -93.84 REMARK 500 LEU A 72 5.78 -64.99 REMARK 500 CYS A 167 -19.34 -148.48 REMARK 500 SER A 176 -164.44 57.38 REMARK 500 TYR A 191 22.08 -140.99 REMARK 500 HIS A 195 85.90 -26.25 REMARK 500 ASN A 199 61.58 60.92 REMARK 500 PHE A 212 -54.79 -144.58 REMARK 500 GLN A 237 46.58 -144.60 REMARK 500 THR A 277 -40.04 -139.74 REMARK 500 HIS A 278 50.35 -108.25 REMARK 500 SER A 281 -158.61 -73.39 REMARK 500 ILE A 307 -50.48 -127.84 REMARK 500 CYS A 323 57.28 39.93 REMARK 500 LYS A 325 -157.99 -111.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NWE RELATED DB: PDB REMARK 900 THIS IS THE SAME BOVINE OPSIN PROTEIN AND G ALPHA CT2 PEPTIDE WITH REMARK 900 A DIFFERENT COMPOUND (CITRONELLOL) BOUND REMARK 900 RELATED ID: 6PGS RELATED DB: PDB REMARK 900 RELATED ID: 6PH7 RELATED DB: PDB DBREF 6PEL A 1 348 UNP P02699 OPSD_BOVIN 1 348 DBREF 6PEL B 340 350 PDB 6PEL 6PEL 340 350 SEQRES 1 A 348 MET ASN GLY THR GLU GLY PRO ASN PHE TYR VAL PRO PHE SEQRES 2 A 348 SER ASN LYS THR GLY VAL VAL ARG SER PRO PHE GLU ALA SEQRES 3 A 348 PRO GLN TYR TYR LEU ALA GLU PRO TRP GLN PHE SER MET SEQRES 4 A 348 LEU ALA ALA TYR MET PHE LEU LEU ILE MET LEU GLY PHE SEQRES 5 A 348 PRO ILE ASN PHE LEU THR LEU TYR VAL THR VAL GLN HIS SEQRES 6 A 348 LYS LYS LEU ARG THR PRO LEU ASN TYR ILE LEU LEU ASN SEQRES 7 A 348 LEU ALA VAL ALA ASP LEU PHE MET VAL PHE GLY GLY PHE SEQRES 8 A 348 THR THR THR LEU TYR THR SER LEU HIS GLY TYR PHE VAL SEQRES 9 A 348 PHE GLY PRO THR GLY CYS ASN LEU GLU GLY PHE PHE ALA SEQRES 10 A 348 THR LEU GLY GLY GLU ILE ALA LEU TRP SER LEU VAL VAL SEQRES 11 A 348 LEU ALA ILE GLU ARG TYR VAL VAL VAL CYS LYS PRO MET SEQRES 12 A 348 SER ASN PHE ARG PHE GLY GLU ASN HIS ALA ILE MET GLY SEQRES 13 A 348 VAL ALA PHE THR TRP VAL MET ALA LEU ALA CYS ALA ALA SEQRES 14 A 348 PRO PRO LEU VAL GLY TRP SER ARG TYR ILE PRO GLU GLY SEQRES 15 A 348 MET GLN CYS SER CYS GLY ILE ASP TYR TYR THR PRO HIS SEQRES 16 A 348 GLU GLU THR ASN ASN GLU SER PHE VAL ILE TYR MET PHE SEQRES 17 A 348 VAL VAL HIS PHE ILE ILE PRO LEU ILE VAL ILE PHE PHE SEQRES 18 A 348 CYS TYR GLY GLN LEU VAL PHE THR VAL LYS GLU ALA ALA SEQRES 19 A 348 ALA GLN GLN GLN GLU SER ALA THR THR GLN LYS ALA GLU SEQRES 20 A 348 LYS GLU VAL THR ARG MET VAL ILE ILE MET VAL ILE ALA SEQRES 21 A 348 PHE LEU ILE CYS TRP LEU PRO TYR ALA GLY VAL ALA PHE SEQRES 22 A 348 TYR ILE PHE THR HIS GLN GLY SER ASP PHE GLY PRO ILE SEQRES 23 A 348 PHE MET THR ILE PRO ALA PHE PHE ALA LYS THR SER ALA SEQRES 24 A 348 VAL TYR ASN PRO VAL ILE TYR ILE MET MET ASN LYS GLN SEQRES 25 A 348 PHE ARG ASN CYS MET VAL THR THR LEU CYS CYS GLY LYS SEQRES 26 A 348 ASN PRO LEU GLY ASP ASP GLU ALA SER THR THR VAL SER SEQRES 27 A 348 LYS THR GLU THR SER GLN VAL ALA PRO ALA SEQRES 1 B 11 ILE LEU GLU ASN LEU LYS ASP VAL GLY LEU PHE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET BMA C 4 11 HET ODM A 401 11 HET BOG A 406 20 HET PLM A 407 17 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM ODM (3R)-3,7-DIMETHYLOCT-6-EN-1-OL HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM PLM PALMITIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN ODM CITRONELLOL HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 4 ODM C10 H20 O FORMUL 5 BOG C14 H28 O6 FORMUL 6 PLM C16 H32 O2 HELIX 1 AA1 SER A 14 GLY A 18 5 5 HELIX 2 AA2 GLU A 33 HIS A 65 1 33 HELIX 3 AA3 LYS A 66 ARG A 69 5 4 HELIX 4 AA4 THR A 70 LEU A 72 5 3 HELIX 5 AA5 ASN A 73 GLY A 89 1 17 HELIX 6 AA6 GLY A 90 GLY A 101 1 12 HELIX 7 AA7 PHE A 105 LYS A 141 1 37 HELIX 8 AA8 GLY A 149 ALA A 169 1 21 HELIX 9 AA9 PRO A 170 VAL A 173 5 4 HELIX 10 AB1 HIS A 195 THR A 198 5 4 HELIX 11 AB2 ASN A 199 HIS A 211 1 13 HELIX 12 AB3 PHE A 212 GLN A 236 1 25 HELIX 13 AB4 SER A 240 ILE A 275 1 36 HELIX 14 AB5 GLY A 284 THR A 289 1 6 HELIX 15 AB6 THR A 289 ILE A 307 1 19 HELIX 16 AB7 ASN A 310 CYS A 322 1 13 HELIX 17 AB8 LEU B 341 VAL B 347 1 7 SHEET 1 AA1 2 THR A 4 GLY A 6 0 SHEET 2 AA1 2 PHE A 9 VAL A 11 -1 O VAL A 11 N THR A 4 SHEET 1 AA2 2 TYR A 178 GLU A 181 0 SHEET 2 AA2 2 SER A 186 ILE A 189 -1 O SER A 186 N GLU A 181 SSBOND 1 CYS A 110 CYS A 187 1555 1555 2.03 LINK ND2 ASN A 15 C1 NAG C 1 1555 1555 1.43 LINK SG CYS A 323 C1 PLM A 407 1555 1555 1.62 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O3 BMA C 3 C1 BMA C 4 1555 1555 1.44 CRYST1 243.412 243.412 108.440 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004108 0.002372 0.000000 0.00000 SCALE2 0.000000 0.004744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009222 0.00000