HEADER NUCLEAR PROTEIN 21-JUN-19 6PFM TITLE CRYSTAL STRUCTURE OF GDC-0927 BOUND TO ESTROGEN RECEPTOR ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: D, A; COMPND 4 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 5 GROUP A MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTAGONIST, BREAST CANCER, LIGAND, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.KIEFER,M.VINOGRADOVA,J.LIANG,B.ZHANG,X.WANG,J.R.ZBIEG, AUTHOR 2 S.S.LABADIE,J.LI,N.C.RAY,D.ORTWINE REVDAT 4 13-MAR-24 6PFM 1 REMARK REVDAT 3 28-AUG-19 6PFM 1 JRNL REVDAT 2 31-JUL-19 6PFM 1 JRNL REVDAT 1 17-JUL-19 6PFM 0 JRNL AUTH S.S.LABADIE,J.LI,R.A.BLAKE,J.H.CHANG,S.GOODACRE,S.J.HARTMAN, JRNL AUTH 2 W.LIANG,J.R.KIEFER,T.KLEINHEINZ,T.LAI,J.LIAO,D.F.ORTWINE, JRNL AUTH 3 V.MODY,N.C.RAY,F.ROUSSEL,M.VINOGRADOVA,S.K.YEAP,B.ZHANG, JRNL AUTH 4 X.ZHENG,J.R.ZBIEG,J.LIANG,X.WANG JRNL TITL DISCOVERY OF A C-8 HYDROXYCHROMENE AS A POTENT DEGRADER OF JRNL TITL 2 ESTROGEN RECEPTOR ALPHA WITH IMPROVED RAT ORAL EXPOSURE OVER JRNL TITL 3 GDC-0927. JRNL REF BIOORG.MED.CHEM.LETT. V. 29 2090 2019 JRNL REFN ESSN 1464-3405 JRNL PMID 31311734 JRNL DOI 10.1016/J.BMCL.2019.07.013 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 814 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1088 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : -2.80000 REMARK 3 B12 (A**2) : 0.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.448 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.352 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.317 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.727 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3759 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3562 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5093 ; 1.357 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8257 ; 1.194 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 5.995 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;36.279 ;23.152 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 680 ;19.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.598 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 489 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4064 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 724 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 D 307 529 A 307 529 6714 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 307 D 545 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9639 64.1830 44.8573 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.2637 REMARK 3 T33: 0.0931 T12: 0.0461 REMARK 3 T13: -0.0516 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 2.0388 L22: 4.8107 REMARK 3 L33: 3.0151 L12: -0.6911 REMARK 3 L13: -0.4303 L23: 1.1586 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0846 S13: -0.2484 REMARK 3 S21: 0.1407 S22: 0.0557 S23: -0.4024 REMARK 3 S31: 0.2845 S32: 0.1534 S33: -0.0438 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 307 A 530 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1803 66.1236 69.2282 REMARK 3 T TENSOR REMARK 3 T11: 0.5393 T22: 0.5076 REMARK 3 T33: 0.1725 T12: 0.0997 REMARK 3 T13: -0.2518 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 2.5452 L22: 6.3203 REMARK 3 L33: 1.7998 L12: -1.4421 REMARK 3 L13: 0.0378 L23: -0.9979 REMARK 3 S TENSOR REMARK 3 S11: -0.3142 S12: -0.3901 S13: -0.1165 REMARK 3 S21: 0.8032 S22: 0.4460 S23: -0.5643 REMARK 3 S31: 0.2181 S32: 0.0908 S33: -0.1318 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6PFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242441. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16277 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-35% PEG 3,350 0.1 M BIS-TRIS (PH REMARK 280 6.1-6.5) 150-300 MM MGCL2, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 72.05300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.59982 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 57.02133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 72.05300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.59982 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 57.02133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 72.05300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.59982 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.02133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 72.05300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.59982 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.02133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 72.05300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.59982 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 57.02133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 72.05300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.59982 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 57.02133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.19964 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 114.04267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 83.19964 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 114.04267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 83.19964 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 114.04267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 83.19964 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 114.04267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 83.19964 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 114.04267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 83.19964 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 114.04267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 704 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 703 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 274 REMARK 465 HIS D 275 REMARK 465 HIS D 276 REMARK 465 HIS D 277 REMARK 465 HIS D 278 REMARK 465 HIS D 279 REMARK 465 HIS D 280 REMARK 465 SER D 281 REMARK 465 SER D 282 REMARK 465 GLY D 283 REMARK 465 VAL D 284 REMARK 465 ASP D 285 REMARK 465 LEU D 286 REMARK 465 GLY D 287 REMARK 465 THR D 288 REMARK 465 GLU D 289 REMARK 465 ASN D 290 REMARK 465 LEU D 291 REMARK 465 TYR D 292 REMARK 465 PHE D 293 REMARK 465 GLN D 294 REMARK 465 SER D 295 REMARK 465 ASN D 296 REMARK 465 ALA D 297 REMARK 465 ILE D 298 REMARK 465 LYS D 299 REMARK 465 ARG D 300 REMARK 465 SER D 301 REMARK 465 LYS D 302 REMARK 465 LYS D 303 REMARK 465 ASN D 304 REMARK 465 SER D 305 REMARK 465 LEU D 306 REMARK 465 PHE D 461 REMARK 465 LEU D 462 REMARK 465 SER D 463 REMARK 465 SER D 464 REMARK 465 ALA D 546 REMARK 465 HIS D 547 REMARK 465 ARG D 548 REMARK 465 LEU D 549 REMARK 465 HIS D 550 REMARK 465 ALA D 551 REMARK 465 PRO D 552 REMARK 465 THR D 553 REMARK 465 MET A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 SER A 281 REMARK 465 SER A 282 REMARK 465 GLY A 283 REMARK 465 VAL A 284 REMARK 465 ASP A 285 REMARK 465 LEU A 286 REMARK 465 GLY A 287 REMARK 465 THR A 288 REMARK 465 GLU A 289 REMARK 465 ASN A 290 REMARK 465 LEU A 291 REMARK 465 TYR A 292 REMARK 465 PHE A 293 REMARK 465 GLN A 294 REMARK 465 SER A 295 REMARK 465 ASN A 296 REMARK 465 ALA A 297 REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 SER A 305 REMARK 465 LEU A 306 REMARK 465 LYS A 531 REMARK 465 ASN A 532 REMARK 465 VAL A 533 REMARK 465 VAL A 534 REMARK 465 PRO A 535 REMARK 465 SER A 536 REMARK 465 TYR A 537 REMARK 465 ASP A 538 REMARK 465 LEU A 539 REMARK 465 LEU A 540 REMARK 465 LEU A 541 REMARK 465 GLU A 542 REMARK 465 MET A 543 REMARK 465 LEU A 544 REMARK 465 ASP A 545 REMARK 465 ALA A 546 REMARK 465 HIS A 547 REMARK 465 ARG A 548 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU D 308 CG CD1 CD2 REMARK 470 ARG D 335 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 419 CG CD OE1 OE2 REMARK 470 TYR D 459 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU D 466 CG CD1 CD2 REMARK 470 ARG D 477 CZ NH1 NH2 REMARK 470 LYS D 529 CG CD CE NZ REMARK 470 VAL D 533 CG1 CG2 REMARK 470 ARG A 335 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 352 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 MET A 437 CG SD CE REMARK 470 SER A 463 OG REMARK 470 ARG A 477 CZ NH1 NH2 REMARK 470 LYS A 492 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU D 330 40.82 -101.82 REMARK 500 LYS D 531 35.29 -86.77 REMARK 500 ASN D 532 27.76 -141.10 REMARK 500 VAL D 533 25.71 -77.95 REMARK 500 GLU A 330 23.77 -78.31 REMARK 500 PRO A 333 10.97 -67.73 REMARK 500 ARG A 335 105.24 175.63 REMARK 500 PRO A 336 170.70 -53.74 REMARK 500 THR A 460 -85.36 -108.91 REMARK 500 PHE A 461 -79.04 46.93 REMARK 500 LEU A 462 -47.94 172.00 REMARK 500 SER A 464 13.39 -145.21 REMARK 500 LYS A 529 81.96 -64.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGJ D 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OGJ A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PET RELATED DB: PDB REMARK 900 RELATED LIGAND COMPLEX WITH SAME PROTEIN DBREF 6PFM D 298 553 UNP P03372 ESR1_HUMAN 298 553 DBREF 6PFM A 298 553 UNP P03372 ESR1_HUMAN 298 553 SEQADV 6PFM MET D 274 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS D 275 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS D 276 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS D 277 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS D 278 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS D 279 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS D 280 UNP P03372 EXPRESSION TAG SEQADV 6PFM SER D 281 UNP P03372 EXPRESSION TAG SEQADV 6PFM SER D 282 UNP P03372 EXPRESSION TAG SEQADV 6PFM GLY D 283 UNP P03372 EXPRESSION TAG SEQADV 6PFM VAL D 284 UNP P03372 EXPRESSION TAG SEQADV 6PFM ASP D 285 UNP P03372 EXPRESSION TAG SEQADV 6PFM LEU D 286 UNP P03372 EXPRESSION TAG SEQADV 6PFM GLY D 287 UNP P03372 EXPRESSION TAG SEQADV 6PFM THR D 288 UNP P03372 EXPRESSION TAG SEQADV 6PFM GLU D 289 UNP P03372 EXPRESSION TAG SEQADV 6PFM ASN D 290 UNP P03372 EXPRESSION TAG SEQADV 6PFM LEU D 291 UNP P03372 EXPRESSION TAG SEQADV 6PFM TYR D 292 UNP P03372 EXPRESSION TAG SEQADV 6PFM PHE D 293 UNP P03372 EXPRESSION TAG SEQADV 6PFM GLN D 294 UNP P03372 EXPRESSION TAG SEQADV 6PFM SER D 295 UNP P03372 EXPRESSION TAG SEQADV 6PFM ASN D 296 UNP P03372 EXPRESSION TAG SEQADV 6PFM ALA D 297 UNP P03372 EXPRESSION TAG SEQADV 6PFM SER D 372 UNP P03372 LEU 372 ENGINEERED MUTATION SEQADV 6PFM SER D 536 UNP P03372 LEU 536 ENGINEERED MUTATION SEQADV 6PFM MET A 274 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS A 275 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS A 276 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS A 277 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS A 278 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS A 279 UNP P03372 EXPRESSION TAG SEQADV 6PFM HIS A 280 UNP P03372 EXPRESSION TAG SEQADV 6PFM SER A 281 UNP P03372 EXPRESSION TAG SEQADV 6PFM SER A 282 UNP P03372 EXPRESSION TAG SEQADV 6PFM GLY A 283 UNP P03372 EXPRESSION TAG SEQADV 6PFM VAL A 284 UNP P03372 EXPRESSION TAG SEQADV 6PFM ASP A 285 UNP P03372 EXPRESSION TAG SEQADV 6PFM LEU A 286 UNP P03372 EXPRESSION TAG SEQADV 6PFM GLY A 287 UNP P03372 EXPRESSION TAG SEQADV 6PFM THR A 288 UNP P03372 EXPRESSION TAG SEQADV 6PFM GLU A 289 UNP P03372 EXPRESSION TAG SEQADV 6PFM ASN A 290 UNP P03372 EXPRESSION TAG SEQADV 6PFM LEU A 291 UNP P03372 EXPRESSION TAG SEQADV 6PFM TYR A 292 UNP P03372 EXPRESSION TAG SEQADV 6PFM PHE A 293 UNP P03372 EXPRESSION TAG SEQADV 6PFM GLN A 294 UNP P03372 EXPRESSION TAG SEQADV 6PFM SER A 295 UNP P03372 EXPRESSION TAG SEQADV 6PFM ASN A 296 UNP P03372 EXPRESSION TAG SEQADV 6PFM ALA A 297 UNP P03372 EXPRESSION TAG SEQADV 6PFM SER A 372 UNP P03372 LEU 372 ENGINEERED MUTATION SEQADV 6PFM SER A 536 UNP P03372 LEU 536 ENGINEERED MUTATION SEQRES 1 D 280 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 D 280 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA ILE LYS SEQRES 3 D 280 ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU THR ALA SEQRES 4 D 280 ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU PRO PRO SEQRES 5 D 280 ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO PHE SER SEQRES 6 D 280 GLU ALA SER MET MET GLY LEU LEU THR ASN LEU ALA ASP SEQRES 7 D 280 ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS ARG VAL SEQRES 8 D 280 PRO GLY PHE VAL ASP LEU THR SER HIS ASP GLN VAL HIS SEQRES 9 D 280 LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET ILE GLY SEQRES 10 D 280 LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS LEU LEU SEQRES 11 D 280 PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS SEQRES 12 D 280 CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET LEU LEU SEQRES 13 D 280 ALA THR SER SER ARG PHE ARG MET MET ASN LEU GLN GLY SEQRES 14 D 280 GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SEQRES 15 D 280 SER GLY VAL TYR THR PHE LEU SER SER THR LEU LYS SER SEQRES 16 D 280 LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS SEQRES 17 D 280 ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS ALA GLY SEQRES 18 D 280 LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU SEQRES 19 D 280 LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER ASN LYS SEQRES 20 D 280 GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS ASN VAL SEQRES 21 D 280 VAL PRO SER TYR ASP LEU LEU LEU GLU MET LEU ASP ALA SEQRES 22 D 280 HIS ARG LEU HIS ALA PRO THR SEQRES 1 A 280 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 280 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA ILE LYS SEQRES 3 A 280 ARG SER LYS LYS ASN SER LEU ALA LEU SER LEU THR ALA SEQRES 4 A 280 ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU PRO PRO SEQRES 5 A 280 ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO PHE SER SEQRES 6 A 280 GLU ALA SER MET MET GLY LEU LEU THR ASN LEU ALA ASP SEQRES 7 A 280 ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS ARG VAL SEQRES 8 A 280 PRO GLY PHE VAL ASP LEU THR SER HIS ASP GLN VAL HIS SEQRES 9 A 280 LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU MET ILE GLY SEQRES 10 A 280 LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS LEU LEU SEQRES 11 A 280 PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS SEQRES 12 A 280 CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET LEU LEU SEQRES 13 A 280 ALA THR SER SER ARG PHE ARG MET MET ASN LEU GLN GLY SEQRES 14 A 280 GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SEQRES 15 A 280 SER GLY VAL TYR THR PHE LEU SER SER THR LEU LYS SER SEQRES 16 A 280 LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS SEQRES 17 A 280 ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS ALA GLY SEQRES 18 A 280 LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU SEQRES 19 A 280 LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER ASN LYS SEQRES 20 A 280 GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS ASN VAL SEQRES 21 A 280 VAL PRO SER TYR ASP LEU LEU LEU GLU MET LEU ASP ALA SEQRES 22 A 280 HIS ARG LEU HIS ALA PRO THR HET OGJ D 601 60 HET OGJ A 601 60 HETNAM OGJ (2S)-2-(4-{2-[3-(FLUOROMETHYL)AZETIDIN-1- HETNAM 2 OGJ YL]ETHOXY}PHENYL)-3-(3-HYDROXYPHENYL)-4-METHYL-2H-1- HETNAM 3 OGJ BENZOPYRAN-6-OL FORMUL 3 OGJ 2(C28 H28 F N O4) FORMUL 5 HOH *21(H2 O) HELIX 1 AA1 THR D 311 ALA D 322 1 12 HELIX 2 AA2 SER D 338 LYS D 362 1 25 HELIX 3 AA3 GLY D 366 LEU D 370 5 5 HELIX 4 AA4 THR D 371 SER D 395 1 25 HELIX 5 AA5 ARG D 412 LYS D 416 1 5 HELIX 6 AA6 MET D 421 ASN D 439 1 19 HELIX 7 AA7 GLN D 441 VAL D 458 1 18 HELIX 8 AA8 LEU D 466 ALA D 493 1 28 HELIX 9 AA9 THR D 496 LYS D 531 1 36 HELIX 10 AB1 SER D 536 MET D 543 1 8 HELIX 11 AB2 THR A 311 ALA A 322 1 12 HELIX 12 AB3 SER A 338 VAL A 364 1 27 HELIX 13 AB4 GLY A 366 LEU A 370 5 5 HELIX 14 AB5 THR A 371 SER A 395 1 25 HELIX 15 AB6 ARG A 412 LYS A 416 1 5 HELIX 16 AB7 MET A 421 ASN A 439 1 19 HELIX 17 AB8 GLN A 441 VAL A 458 1 18 HELIX 18 AB9 THR A 465 ALA A 493 1 29 HELIX 19 AC1 THR A 496 LYS A 529 1 34 SHEET 1 AA1 2 LYS D 401 ALA D 405 0 SHEET 2 AA1 2 LEU D 408 ASP D 411 -1 O LEU D 408 N ALA D 405 SHEET 1 AA2 2 LYS A 401 ALA A 405 0 SHEET 2 AA2 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SITE 1 AC1 14 MET D 343 LEU D 346 ALA D 350 ASP D 351 SITE 2 AC1 14 GLU D 353 LEU D 354 TRP D 383 LEU D 387 SITE 3 AC1 14 ARG D 394 PHE D 404 MET D 421 GLY D 521 SITE 4 AC1 14 HIS D 524 LEU D 525 SITE 1 AC2 14 LEU A 346 ALA A 350 ASP A 351 GLU A 353 SITE 2 AC2 14 LEU A 387 LEU A 391 ARG A 394 PHE A 404 SITE 3 AC2 14 MET A 421 LEU A 428 GLY A 521 HIS A 524 SITE 4 AC2 14 LEU A 525 PRO D 535 CRYST1 144.106 144.106 171.064 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006939 0.004006 0.000000 0.00000 SCALE2 0.000000 0.008013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005846 0.00000