HEADER OXIDOREDUCTASE/INHIBITOR 23-JUN-19 6PG1 TITLE CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH UNPURIFIED REACTION TITLE 2 PRODUCT F1 (METHYLPIPERAZINONE 6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: B0013 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, OXIDOREDUCTASE-INHIBITOR KEYWDS 2 COMPLEX, REFILX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.BENTLEY,B.DOAK,M.J.SCANLON REVDAT 3 11-OCT-23 6PG1 1 REMARK REVDAT 2 11-NOV-20 6PG1 1 JRNL REVDAT 1 01-JUL-20 6PG1 0 JRNL AUTH M.R.BENTLEY,O.V.ILYICHOVA,G.WANG,M.L.WILLIAMS,G.SHARMA, JRNL AUTH 2 W.S.ALWAN,R.L.WHITEHOUSE,B.MOHANTY,P.J.SCAMMELLS,B.HERAS, JRNL AUTH 3 J.L.MARTIN,M.TOTSIKA,B.CAPUANO,B.C.DOAK,M.J.SCANLON JRNL TITL RAPID ELABORATION OF FRAGMENTS INTO LEADS BY X-RAY JRNL TITL 2 CRYSTALLOGRAPHIC SCREENING OF PARALLEL CHEMICAL LIBRARIES JRNL TITL 3 (REFIL X ). JRNL REF J.MED.CHEM. V. 63 6863 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32529824 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00111 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 29658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.230 REMARK 3 FREE R VALUE TEST SET COUNT : 959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2100 - 3.8300 0.93 4030 116 0.1673 0.2160 REMARK 3 2 3.8300 - 3.0400 0.95 3970 166 0.1909 0.2629 REMARK 3 3 3.0400 - 2.6600 0.98 4094 161 0.2375 0.3023 REMARK 3 4 2.6600 - 2.4200 0.99 4154 147 0.2620 0.2826 REMARK 3 5 2.4200 - 2.2400 1.00 4178 145 0.2613 0.2922 REMARK 3 6 2.2400 - 2.1100 1.00 4196 121 0.2780 0.3173 REMARK 3 7 2.1100 - 2.0100 0.97 4077 103 0.3040 0.3182 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.268 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.606 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3053 REMARK 3 ANGLE : 0.516 4151 REMARK 3 CHIRALITY : 0.037 448 REMARK 3 PLANARITY : 0.004 581 REMARK 3 DIHEDRAL : 4.180 2458 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2538 -2.9699 0.9117 REMARK 3 T TENSOR REMARK 3 T11: 0.1992 T22: 0.2444 REMARK 3 T33: 0.2125 T12: -0.0159 REMARK 3 T13: -0.0147 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.6770 L22: 4.2808 REMARK 3 L33: 3.3038 L12: 0.1095 REMARK 3 L13: 1.1555 L23: 2.4514 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: 0.3351 S13: -0.1354 REMARK 3 S21: -0.2312 S22: -0.0127 S23: -0.0849 REMARK 3 S31: -0.0603 S32: 0.1452 S33: -0.0131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5411 4.3778 18.9717 REMARK 3 T TENSOR REMARK 3 T11: 0.2761 T22: 0.2154 REMARK 3 T33: 0.1858 T12: -0.0045 REMARK 3 T13: -0.0229 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 3.5383 L22: 1.9271 REMARK 3 L33: 3.0482 L12: 1.3020 REMARK 3 L13: 0.5966 L23: -0.2276 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: -0.0623 S13: 0.0112 REMARK 3 S21: 0.1789 S22: -0.1069 S23: -0.0465 REMARK 3 S31: 0.1650 S32: 0.0149 S33: 0.0949 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9361 -0.5447 3.1032 REMARK 3 T TENSOR REMARK 3 T11: 0.2133 T22: 0.2829 REMARK 3 T33: 0.2043 T12: 0.0396 REMARK 3 T13: -0.0092 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.4146 L22: 3.5064 REMARK 3 L33: 2.7494 L12: 1.2835 REMARK 3 L13: 1.3186 L23: 2.0539 REMARK 3 S TENSOR REMARK 3 S11: -0.1393 S12: 0.1914 S13: -0.0288 REMARK 3 S21: -0.2368 S22: 0.1749 S23: -0.0148 REMARK 3 S31: 0.0135 S32: 0.3516 S33: -0.0286 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9552 4.4333 21.3561 REMARK 3 T TENSOR REMARK 3 T11: 0.4854 T22: 0.5254 REMARK 3 T33: 0.4923 T12: 0.1039 REMARK 3 T13: 0.0938 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.7231 L22: 3.4350 REMARK 3 L33: 3.9105 L12: 0.5367 REMARK 3 L13: 0.5523 L23: 2.3342 REMARK 3 S TENSOR REMARK 3 S11: 0.4090 S12: 0.4337 S13: 0.1888 REMARK 3 S21: -0.4162 S22: -0.3424 S23: 0.7571 REMARK 3 S31: -0.7961 S32: -0.8460 S33: -0.0367 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4634 -15.1083 14.2652 REMARK 3 T TENSOR REMARK 3 T11: 0.2982 T22: 0.4146 REMARK 3 T33: 0.2556 T12: -0.0556 REMARK 3 T13: 0.0037 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 6.0575 L22: 3.1668 REMARK 3 L33: 1.4828 L12: 1.1846 REMARK 3 L13: -1.0831 L23: 0.2959 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: -0.3035 S13: -0.2822 REMARK 3 S21: -0.1285 S22: -0.1604 S23: 0.1665 REMARK 3 S31: -0.0726 S32: -0.2014 S33: 0.0949 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2315 3.3618 12.1035 REMARK 3 T TENSOR REMARK 3 T11: 0.6785 T22: 0.7802 REMARK 3 T33: 0.5020 T12: 0.2993 REMARK 3 T13: 0.0219 T23: 0.1017 REMARK 3 L TENSOR REMARK 3 L11: 2.4415 L22: 4.7703 REMARK 3 L33: 2.9228 L12: -0.1222 REMARK 3 L13: 1.5012 L23: 2.0571 REMARK 3 S TENSOR REMARK 3 S11: -0.2422 S12: -0.2860 S13: 0.7625 REMARK 3 S21: -0.4644 S22: 0.0802 S23: 0.8678 REMARK 3 S31: -0.9119 S32: -0.8190 S33: 0.2458 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3259 11.4306 29.1572 REMARK 3 T TENSOR REMARK 3 T11: 0.6465 T22: 0.3779 REMARK 3 T33: 0.4542 T12: 0.1670 REMARK 3 T13: 0.1592 T23: -0.1081 REMARK 3 L TENSOR REMARK 3 L11: 6.8159 L22: 6.4080 REMARK 3 L33: 6.7738 L12: 1.6154 REMARK 3 L13: -0.3299 L23: -1.4882 REMARK 3 S TENSOR REMARK 3 S11: 0.5880 S12: -0.0538 S13: 0.3974 REMARK 3 S21: -0.8510 S22: -0.9128 S23: 0.0205 REMARK 3 S31: -0.9182 S32: -0.5720 S33: 0.1760 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30133 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.60300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13 % PEG 8000, 5-7.5% GLYCEROL, REMARK 280 100MM NA CACODYLATE PH6.1, 1MM CUCL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.99800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.99800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 393 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 55 CE NZ REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 TYR B 9 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 GLN B 21 CG CD OE1 NE2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 132 CE NZ REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -75.13 -105.40 REMARK 500 LYS A 98 -66.85 -94.62 REMARK 500 LYS B 7 -64.27 -103.92 REMARK 500 LYS B 98 -66.65 -106.41 REMARK 500 ASN B 156 -98.78 51.88 REMARK 500 GLU B 187 61.90 -102.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 393 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B 394 DISTANCE = 7.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 O REMARK 620 2 GLU B 4 OE1 92.3 REMARK 620 3 ASP B 44 OD1 26.9 73.0 REMARK 620 4 ASP B 44 OD2 30.0 73.0 4.1 REMARK 620 5 HOH B 353 O 108.7 100.6 93.6 89.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O7P A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PC9 RELATED DB: PDB REMARK 900 6PC9 CONTAINS A CO-CRYSTAL STRUCTURE OF THE SAME PROTEIN AND LIGAND DBREF 6PG1 A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6PG1 B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET O7P A 201 54 HET CU B 201 1 HET EDO B 202 4 HETNAM O7P 2-METHYL-4-{4-[2-(4-METHYL-3-OXOPIPERAZIN-1-YL)-2- HETNAM 2 O7P OXOETHYL]PHENOXY}BENZONITRILE HETNAM CU COPPER (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 O7P C21 H21 N3 O3 FORMUL 4 CU CU 2+ FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *264(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LYS A 48 1 8 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LYS B 48 1 8 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N PHE A 25 O ALA A 152 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O TYR A 59 N GLU A 24 SHEET 1 AA2 2 TYR B 9 THR B 11 0 SHEET 2 AA2 2 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 1 AA3 3 MET B 56 HIS B 60 0 SHEET 2 AA3 3 VAL B 22 PHE B 26 1 N VAL B 22 O THR B 57 SHEET 3 AA3 3 ALA B 152 VAL B 155 -1 O ALA B 152 N PHE B 25 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.03 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.03 LINK O ALA B 1 CU CU B 201 1555 1555 2.16 LINK OE1 GLU B 4 CU CU B 201 1555 1555 1.93 LINK OD1 ASP B 44 CU CU B 201 1555 4546 2.25 LINK OD2 ASP B 44 CU CU B 201 1555 4546 2.32 LINK CU CU B 201 O HOH B 353 1555 4556 2.39 CISPEP 1 VAL A 150 PRO A 151 0 3.84 CISPEP 2 VAL B 150 PRO B 151 0 2.54 SITE 1 AC1 6 HIS A 32 GLN A 35 GLY A 149 VAL A 150 SITE 2 AC1 6 PRO A 163 GLN A 164 SITE 1 AC2 4 ALA B 1 GLU B 4 ASP B 44 HOH B 353 CRYST1 117.996 64.410 74.433 90.00 125.85 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008475 0.000000 0.006124 0.00000 SCALE2 0.000000 0.015526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016576 0.00000