HEADER OXIDOREDUCTASE/INHIBITOR 24-JUN-19 6PGJ TITLE CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH UNPURIFIED REACTION TITLE 2 PRODUCT A5 (MORPHOLINE CARBOXYLIC ACID 7) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: B0013 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, OXIDOREDUCTASE-INHIBITOR KEYWDS 2 COMPLEX, REFILX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.BENTLEY,B.DOAK,M.J.SCANLON REVDAT 3 11-OCT-23 6PGJ 1 REMARK REVDAT 2 11-NOV-20 6PGJ 1 JRNL LINK REVDAT 1 06-MAY-20 6PGJ 0 JRNL AUTH M.R.BENTLEY,O.V.ILYICHOVA,G.WANG,M.L.WILLIAMS,G.SHARMA, JRNL AUTH 2 W.S.ALWAN,R.L.WHITEHOUSE,B.MOHANTY,P.J.SCAMMELLS,B.HERAS, JRNL AUTH 3 J.L.MARTIN,M.TOTSIKA,B.CAPUANO,B.C.DOAK,M.J.SCANLON JRNL TITL RAPID ELABORATION OF FRAGMENTS INTO LEADS BY X-RAY JRNL TITL 2 CRYSTALLOGRAPHIC SCREENING OF PARALLEL CHEMICAL LIBRARIES JRNL TITL 3 (REFIL X ). JRNL REF J.MED.CHEM. V. 63 6863 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32529824 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00111 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3211 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 34979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6900 - 3.6200 0.95 4843 144 0.1530 0.1857 REMARK 3 2 3.6200 - 2.8800 0.96 4789 166 0.1865 0.2033 REMARK 3 3 2.8800 - 2.5100 0.98 4881 138 0.2192 0.2805 REMARK 3 4 2.5100 - 2.2800 0.99 4927 136 0.2269 0.2973 REMARK 3 5 2.2800 - 2.1200 0.98 4889 118 0.2308 0.2836 REMARK 3 6 2.1200 - 2.0000 0.98 4880 128 0.2519 0.2892 REMARK 3 7 2.0000 - 1.9000 0.97 4826 114 0.2712 0.3221 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.248 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3023 REMARK 3 ANGLE : 0.820 4115 REMARK 3 CHIRALITY : 0.046 449 REMARK 3 PLANARITY : 0.005 539 REMARK 3 DIHEDRAL : 5.515 2091 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0840 -3.1933 1.1167 REMARK 3 T TENSOR REMARK 3 T11: 0.2562 T22: 0.2156 REMARK 3 T33: 0.2151 T12: -0.0151 REMARK 3 T13: 0.0146 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.1127 L22: 5.4475 REMARK 3 L33: 3.2817 L12: 0.5442 REMARK 3 L13: 1.4689 L23: 4.0512 REMARK 3 S TENSOR REMARK 3 S11: 0.1040 S12: 0.2163 S13: -0.1434 REMARK 3 S21: -0.1664 S22: 0.0017 S23: -0.1906 REMARK 3 S31: 0.0516 S32: -0.0023 S33: -0.0755 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5767 3.8933 15.6795 REMARK 3 T TENSOR REMARK 3 T11: 0.2302 T22: 0.1482 REMARK 3 T33: 0.0971 T12: -0.0122 REMARK 3 T13: -0.0163 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 6.9849 L22: 2.1521 REMARK 3 L33: 3.6024 L12: -0.1255 REMARK 3 L13: -0.0758 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.0963 S13: -0.1401 REMARK 3 S21: 0.1650 S22: -0.0540 S23: -0.0379 REMARK 3 S31: 0.2125 S32: 0.0293 S33: 0.0344 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9224 5.8089 11.9027 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1213 REMARK 3 T33: 0.2149 T12: 0.0264 REMARK 3 T13: -0.0174 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 2.0989 L22: 2.3761 REMARK 3 L33: 5.7078 L12: 1.0547 REMARK 3 L13: 0.7295 L23: 1.8611 REMARK 3 S TENSOR REMARK 3 S11: -0.1338 S12: 0.1217 S13: -0.0275 REMARK 3 S21: -0.0107 S22: 0.1580 S23: -0.1603 REMARK 3 S31: 0.0744 S32: 0.2970 S33: -0.0292 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0964 -10.9124 -3.6819 REMARK 3 T TENSOR REMARK 3 T11: 0.3429 T22: 0.2663 REMARK 3 T33: 0.2468 T12: 0.0153 REMARK 3 T13: -0.0599 T23: -0.0699 REMARK 3 L TENSOR REMARK 3 L11: 8.1151 L22: 3.4755 REMARK 3 L33: 5.6538 L12: 2.9474 REMARK 3 L13: -3.8762 L23: -1.7182 REMARK 3 S TENSOR REMARK 3 S11: -0.1507 S12: 0.2912 S13: 0.0560 REMARK 3 S21: 0.0227 S22: 0.1380 S23: 0.0915 REMARK 3 S31: -0.0818 S32: -0.3081 S33: 0.0157 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2506 19.6578 23.7288 REMARK 3 T TENSOR REMARK 3 T11: 1.3178 T22: 0.6296 REMARK 3 T33: 0.9565 T12: 0.2009 REMARK 3 T13: -0.0796 T23: -0.1397 REMARK 3 L TENSOR REMARK 3 L11: 6.6889 L22: 6.5784 REMARK 3 L33: 5.6422 L12: 1.0691 REMARK 3 L13: 2.9434 L23: -1.1216 REMARK 3 S TENSOR REMARK 3 S11: -1.3436 S12: -1.3907 S13: 2.1892 REMARK 3 S21: 0.2269 S22: -0.4920 S23: 0.4204 REMARK 3 S31: -4.1079 S32: -1.3939 S33: 1.6371 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9825 1.2775 20.2007 REMARK 3 T TENSOR REMARK 3 T11: 0.3602 T22: 0.4601 REMARK 3 T33: 0.4109 T12: -0.0537 REMARK 3 T13: 0.0116 T23: -0.1232 REMARK 3 L TENSOR REMARK 3 L11: 5.3678 L22: 4.0496 REMARK 3 L33: 5.7447 L12: -0.6839 REMARK 3 L13: 0.5749 L23: 1.2390 REMARK 3 S TENSOR REMARK 3 S11: -0.2208 S12: 0.1030 S13: 0.1640 REMARK 3 S21: -0.0898 S22: -0.3022 S23: 0.6799 REMARK 3 S31: 0.2539 S32: -1.0440 S33: 0.4285 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2925 -15.2488 13.9559 REMARK 3 T TENSOR REMARK 3 T11: 0.2922 T22: 0.3971 REMARK 3 T33: 0.2779 T12: -0.0978 REMARK 3 T13: -0.0186 T23: -0.0806 REMARK 3 L TENSOR REMARK 3 L11: 7.3170 L22: 5.6812 REMARK 3 L33: 1.4442 L12: 2.3684 REMARK 3 L13: -0.7749 L23: -0.3985 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: -0.2557 S13: -0.0230 REMARK 3 S21: -0.1884 S22: -0.2516 S23: 0.5231 REMARK 3 S31: -0.0644 S32: -0.1303 S33: 0.1709 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3990 5.3162 15.1565 REMARK 3 T TENSOR REMARK 3 T11: 0.5205 T22: 0.4678 REMARK 3 T33: 0.4958 T12: 0.1479 REMARK 3 T13: -0.0092 T23: -0.0590 REMARK 3 L TENSOR REMARK 3 L11: 0.7570 L22: 5.1597 REMARK 3 L33: 2.0160 L12: 1.2892 REMARK 3 L13: 0.6921 L23: 2.0634 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: -0.2998 S13: 0.5255 REMARK 3 S21: -0.7031 S22: -0.4568 S23: 0.7536 REMARK 3 S31: -0.3931 S32: -0.6348 S33: 0.4457 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9856 10.5398 29.4632 REMARK 3 T TENSOR REMARK 3 T11: 0.4932 T22: 0.4695 REMARK 3 T33: 0.4201 T12: 0.2040 REMARK 3 T13: 0.1098 T23: -0.1041 REMARK 3 L TENSOR REMARK 3 L11: 4.8388 L22: 6.9390 REMARK 3 L33: 8.6617 L12: 0.6016 REMARK 3 L13: 2.8264 L23: -2.3952 REMARK 3 S TENSOR REMARK 3 S11: 0.4497 S12: 0.1258 S13: 0.2171 REMARK 3 S21: -0.8084 S22: -0.7901 S23: 0.3252 REMARK 3 S31: -0.3727 S32: -0.7345 S33: 0.3004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35352 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 34.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13 % PEG 8000, 5-7.5% GLYCEROL, REMARK 280 100MM NA CACODYLATE PH6.1, 1MM CUCL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.80400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.41350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.80400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.41350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 438 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 GLU A 13 CD OE1 OE2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LYS A 118 CE NZ REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 ASP B 86 CG OD1 OD2 REMARK 470 LYS B 98 CE NZ REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 PHE B 129 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 132 CE NZ REMARK 470 LYS B 140 CD CE NZ REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLN B 164 CD OE1 NE2 REMARK 470 LYS B 183 CD CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 30 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -85.95 -114.37 REMARK 500 GLN B 2 -111.65 48.66 REMARK 500 LYS B 7 -73.80 -110.63 REMARK 500 LYS B 98 -70.57 -105.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 O REMARK 620 2 HIS B 41 NE2 23.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 202 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ASP B 44 OD2 66.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OMJ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAJ B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PD7 RELATED DB: PDB REMARK 900 6PD7 CONTAINS A CO-CRYSTAL STRUCTURE OF THE SAME PROTEIN AND LIGAND DBREF 6PGJ A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6PGJ B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET OMJ A 201 28 HET CU B 201 1 HET CU B 202 1 HET OAJ B 203 28 HETNAM OMJ (3S)-4-{[4-(4-CYANO-3-METHYLPHENOXY) HETNAM 2 OMJ PHENYL]ACETYL}MORPHOLINE-3-CARBOXYLIC ACID HETNAM CU COPPER (II) ION HETNAM OAJ (3R)-4-{[4-(4-CYANO-3-METHYLPHENOXY) HETNAM 2 OAJ PHENYL]ACETYL}MORPHOLINE-3-CARBOXYLIC ACID FORMUL 3 OMJ C21 H20 N2 O5 FORMUL 4 CU 2(CU 2+) FORMUL 6 OAJ C21 H20 N2 O5 FORMUL 7 HOH *272(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O TYR A 59 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N VAL B 155 O TYR B 159 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N VAL B 22 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.05 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.20 LINK O ALA B 1 CU CU B 201 1555 1555 2.34 LINK N ALA B 1 CU CU B 202 1555 1555 2.39 LINK NE2 HIS B 41 CU CU B 201 1555 4546 2.53 LINK OD2 ASP B 44 CU CU B 202 1555 4546 2.22 CISPEP 1 VAL A 150 PRO A 151 0 -1.62 CISPEP 2 VAL B 150 PRO B 151 0 -0.08 SITE 1 AC1 9 HIS A 32 GLN A 35 GLY A 149 VAL A 150 SITE 2 AC1 9 PRO A 151 PRO A 163 GLN A 164 PHE A 174 SITE 3 AC1 9 PHE B 29 SITE 1 AC2 2 ALA B 1 HIS B 41 SITE 1 AC3 3 ALA B 1 ASP B 44 HOH B 322 SITE 1 AC4 12 THR A 99 GLN A 100 HIS B 32 GLN B 35 SITE 2 AC4 12 PHE B 36 LEU B 40 GLY B 149 VAL B 150 SITE 3 AC4 12 PRO B 163 MET B 171 PHE B 174 HOH B 330 CRYST1 117.608 64.827 74.131 90.00 125.93 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008503 0.000000 0.006162 0.00000 SCALE2 0.000000 0.015426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016659 0.00000