HEADER SIGNALING PROTEIN 24-JUN-19 6PGQ TITLE CRYSTAL STRUCTURE OF N-GLYCOSYLATED HUMAN CALCITONIN RECEPTOR TITLE 2 EXTRACELLULAR DOMAIN IN COMPLEX WITH SALMON CALCITONIN (22-32) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTODEXTRIN-BINDING PROTEIN,CALCITONIN RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CT-R; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CALCITONIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 562, 9606; SOURCE 5 GENE: MALE, CALCR; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI-; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ONCORHYNCHUS SP.; SOURCE 13 ORGANISM_COMMON: SALMON; SOURCE 14 ORGANISM_TAXID: 8025 KEYWDS CLASS B GPCR, GLCNAC, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LEE,A.A.PIOSZAK REVDAT 4 29-JUL-20 6PGQ 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 27-MAY-20 6PGQ 1 JRNL REVDAT 2 19-FEB-20 6PGQ 1 JRNL REVDAT 1 12-FEB-20 6PGQ 0 JRNL AUTH S.M.LEE,Y.JEONG,J.SIMMS,M.L.WARNER,D.R.POYNER,K.Y.CHUNG, JRNL AUTH 2 A.A.PIOSZAK JRNL TITL CALCITONIN RECEPTOR N-GLYCOSYLATION ENHANCES PEPTIDE HORMONE JRNL TITL 2 AFFINITY BY CONTROLLING RECEPTOR DYNAMICS. JRNL REF J.MOL.BIOL. V. 432 1996 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32035902 JRNL DOI 10.1016/J.JMB.2020.01.028 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 22878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1654 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.406 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.269 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.683 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3981 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3585 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5417 ; 1.832 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8375 ; 1.088 ; 2.987 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 6.541 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;32.353 ;25.165 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 637 ;18.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.978 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 578 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4428 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 788 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -334 A 37 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6060 -30.2792 -18.7223 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.0624 REMARK 3 T33: 0.2350 T12: 0.0144 REMARK 3 T13: -0.0880 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 2.8702 L22: 2.6679 REMARK 3 L33: 2.3592 L12: -0.9064 REMARK 3 L13: 0.0131 L23: 1.2970 REMARK 3 S TENSOR REMARK 3 S11: -0.0866 S12: -0.3341 S13: 0.4746 REMARK 3 S21: 0.1690 S22: 0.1638 S23: -0.4593 REMARK 3 S31: -0.1886 S32: 0.1350 S33: -0.0772 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 138 REMARK 3 RESIDUE RANGE : A 502 A 502 REMARK 3 RESIDUE RANGE : A 503 A 503 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -21.5017 -24.4044 -1.3326 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.1623 REMARK 3 T33: 0.0109 T12: 0.0242 REMARK 3 T13: -0.0222 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.7611 L22: 2.6262 REMARK 3 L33: 2.6370 L12: -0.0748 REMARK 3 L13: -2.4565 L23: -0.2075 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: -0.0507 S13: -0.0634 REMARK 3 S21: -0.1236 S22: -0.1203 S23: -0.1056 REMARK 3 S31: 0.2031 S32: 0.1652 S33: 0.0402 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3774 -16.4896 -5.3977 REMARK 3 T TENSOR REMARK 3 T11: 0.3258 T22: 0.9997 REMARK 3 T33: 0.7751 T12: 0.0119 REMARK 3 T13: -0.1019 T23: -0.2728 REMARK 3 L TENSOR REMARK 3 L11: 0.2694 L22: 10.6247 REMARK 3 L33: 9.7965 L12: -1.6122 REMARK 3 L13: 1.5645 L23: -10.1507 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.2268 S13: 0.1102 REMARK 3 S21: -0.1155 S22: -0.5441 S23: -0.8391 REMARK 3 S31: 0.1404 S32: 0.7372 S33: 0.5560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6PGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24107 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.94M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE, 15% ETHYLENE GLYCOL, PH 4.7, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 90.64400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.64400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 90.64400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.64400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 90.64400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 90.64400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 90.64400 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 90.64400 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 90.64400 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 90.64400 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 90.64400 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 90.64400 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 90.64400 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 90.64400 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 90.64400 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 90.64400 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 90.64400 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 90.64400 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 135.96600 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 45.32200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 45.32200 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 135.96600 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 135.96600 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 135.96600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.32200 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 45.32200 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 135.96600 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.32200 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 135.96600 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 45.32200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 135.96600 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 45.32200 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 45.32200 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 45.32200 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 135.96600 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 45.32200 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 135.96600 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 135.96600 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 135.96600 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 45.32200 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 45.32200 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 135.96600 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 135.96600 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 45.32200 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 45.32200 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 45.32200 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 45.32200 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 135.96600 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 45.32200 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 135.96600 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 45.32200 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 135.96600 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 135.96600 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 135.96600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 139 REMARK 465 GLU A 140 REMARK 465 LYS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 22 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 47 OD1 ASP A 97 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A-183 109.26 -56.14 REMARK 500 ALA A-165 -74.07 -74.58 REMARK 500 LEU A -48 64.87 -69.97 REMARK 500 ASP A 97 45.65 -106.92 REMARK 500 ASN A 124 17.59 -157.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PFO RELATED DB: PDB DBREF1 6PGQ A -333 33 UNP A0A0A8UN35_ECOLX DBREF2 6PGQ A A0A0A8UN35 26 392 DBREF 6PGQ A 39 141 UNP P30988 CALCR_HUMAN 57 159 DBREF 6PGQ B 22 32 UNP Q92163 Q92163_ONCSP 30 40 SEQADV 6PGQ MET A -334 UNP A0A0A8UN3 INITIATING METHIONINE SEQADV 6PGQ ASN A 34 UNP A0A0A8UN3 LINKER SEQADV 6PGQ ALA A 35 UNP A0A0A8UN3 LINKER SEQADV 6PGQ ALA A 36 UNP A0A0A8UN3 LINKER SEQADV 6PGQ ALA A 37 UNP A0A0A8UN3 LINKER SEQADV 6PGQ GLU A 38 UNP A0A0A8UN3 LINKER SEQADV 6PGQ HIS A 142 UNP P30988 EXPRESSION TAG SEQADV 6PGQ HIS A 143 UNP P30988 EXPRESSION TAG SEQADV 6PGQ HIS A 144 UNP P30988 EXPRESSION TAG SEQADV 6PGQ HIS A 145 UNP P30988 EXPRESSION TAG SEQADV 6PGQ HIS A 146 UNP P30988 EXPRESSION TAG SEQADV 6PGQ HIS A 147 UNP P30988 EXPRESSION TAG SEQADV 6PGQ NH2 B 33 UNP Q92163 AMIDATION SEQRES 1 A 482 MET ALA LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE SEQRES 2 A 482 ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY SEQRES 3 A 482 LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL SEQRES 4 A 482 GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL SEQRES 5 A 482 ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA SEQRES 6 A 482 HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU SEQRES 7 A 482 ALA GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU SEQRES 8 A 482 TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS SEQRES 9 A 482 LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU SEQRES 10 A 482 ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR SEQRES 11 A 482 TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA SEQRES 12 A 482 LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO SEQRES 13 A 482 TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR SEQRES 14 A 482 ALA PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP SEQRES 15 A 482 VAL GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR SEQRES 16 A 482 PHE LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA SEQRES 17 A 482 ASP THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS SEQRES 18 A 482 GLY GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SEQRES 19 A 482 SER ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR SEQRES 20 A 482 VAL LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE SEQRES 21 A 482 VAL GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO SEQRES 22 A 482 ASN LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU SEQRES 23 A 482 LEU THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS SEQRES 24 A 482 PRO LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU SEQRES 25 A 482 LEU ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN SEQRES 26 A 482 ALA GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SEQRES 27 A 482 SER ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN SEQRES 28 A 482 ALA ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS SEQRES 29 A 482 ASP ALA GLN THR ASN ALA ALA ALA GLU PHE LEU TYR VAL SEQRES 30 A 482 VAL GLY ARG LYS LYS MET MET ASP ALA GLN TYR LYS CYS SEQRES 31 A 482 TYR ASP ARG MET GLN GLN LEU PRO ALA TYR GLN GLY GLU SEQRES 32 A 482 GLY PRO TYR CYS ASN ARG THR TRP ASP GLY TRP LEU CYS SEQRES 33 A 482 TRP ASP ASP THR PRO ALA GLY VAL LEU SER TYR GLN PHE SEQRES 34 A 482 CYS PRO ASP TYR PHE PRO ASP PHE ASP PRO SER GLU LYS SEQRES 35 A 482 VAL THR LYS TYR CYS ASP GLU LYS GLY VAL TRP PHE LYS SEQRES 36 A 482 HIS PRO GLU ASN ASN ARG THR TRP SER ASN TYR THR MET SEQRES 37 A 482 CYS ASN ALA PHE THR PRO GLU LYS HIS HIS HIS HIS HIS SEQRES 38 A 482 HIS SEQRES 1 B 12 TYR PRO ARG THR ASN THR GLY SER GLY THR PRO NH2 HET NH2 B 33 1 HET GLC C 1 12 HET GLC C 2 11 HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HET ACT A 504 4 HETNAM NH2 AMINO GROUP HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ACT ACETATE ION FORMUL 2 NH2 H2 N FORMUL 3 GLC 2(C6 H12 O6) FORMUL 4 NAG 3(C8 H15 N O6) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *2(H2 O) HELIX 1 AA1 GLY A -317 GLY A -301 1 17 HELIX 2 AA2 LYS A -291 ALA A -282 1 10 HELIX 3 AA3 ARG A -267 SER A -260 1 8 HELIX 4 AA4 ASP A -251 LYS A -245 1 7 HELIX 5 AA5 TYR A -243 VAL A -236 1 8 HELIX 6 AA6 THR A -205 GLU A -203 5 3 HELIX 7 AA7 GLU A -202 LYS A -191 1 12 HELIX 8 AA8 GLU A -180 ASP A -169 1 12 HELIX 9 AA9 ASN A -148 ASN A -132 1 17 HELIX 10 AB1 ASP A -124 LYS A -114 1 11 HELIX 11 AB2 GLY A -105 TRP A -103 5 3 HELIX 12 AB3 ALA A -102 LYS A -94 1 9 HELIX 13 AB4 ASN A -61 TYR A -50 1 12 HELIX 14 AB5 THR A -47 LYS A -36 1 12 HELIX 15 AB6 LEU A -29 ALA A -21 1 9 HELIX 16 AB7 ASP A -19 GLY A -6 1 14 HELIX 17 AB8 GLN A 2 SER A 19 1 18 HELIX 18 AB9 THR A 23 ALA A 36 1 14 HELIX 19 AC1 ALA A 36 LEU A 62 1 27 SHEET 1 AA1 6 VAL A-298 GLU A-295 0 SHEET 2 AA1 6 LEU A-326 TRP A-323 1 N ILE A-324 O THR A-297 SHEET 3 AA1 6 ILE A-274 ALA A-270 1 O PHE A-272 N TRP A-323 SHEET 4 AA1 6 PHE A -75 ILE A -67 -1 O GLY A -68 N ILE A-273 SHEET 5 AA1 6 TYR A-227 GLU A-222 -1 N GLU A-222 O GLY A -73 SHEET 6 AA1 6 ALA A -32 VAL A -31 -1 O ALA A -32 N VAL A-223 SHEET 1 AA2 5 VAL A-298 GLU A-295 0 SHEET 2 AA2 5 LEU A-326 TRP A-323 1 N ILE A-324 O THR A-297 SHEET 3 AA2 5 ILE A-274 ALA A-270 1 O PHE A-272 N TRP A-323 SHEET 4 AA2 5 PHE A -75 ILE A -67 -1 O GLY A -68 N ILE A-273 SHEET 5 AA2 5 GLU A -5 ILE A -4 1 O GLU A -5 N VAL A -74 SHEET 1 AA3 2 ARG A-235 TYR A-234 0 SHEET 2 AA3 2 LYS A-231 LEU A-230 -1 O LYS A-231 N TYR A-234 SHEET 1 AA4 4 SER A-188 LEU A-186 0 SHEET 2 AA4 4 THR A-111 ASN A-106 1 O ALA A-110 N SER A-188 SHEET 3 AA4 4 SER A-219 ASN A-215 -1 N ASN A-215 O ALA A-110 SHEET 4 AA4 4 TYR A -91 THR A -88 -1 O THR A -88 N LEU A-218 SHEET 1 AA5 2 TYR A-166 GLU A-161 0 SHEET 2 AA5 2 LYS A-158 GLY A-151 -1 O ASP A-156 N LYS A-163 SHEET 1 AA6 2 TYR A 71 CYS A 72 0 SHEET 2 AA6 2 THR A 85 PRO A 86 -1 O THR A 85 N CYS A 72 SHEET 1 AA7 2 THR A 75 TRP A 76 0 SHEET 2 AA7 2 CYS A 81 TRP A 82 -1 O TRP A 82 N THR A 75 SHEET 1 AA8 2 LEU A 90 PHE A 94 0 SHEET 2 AA8 2 LYS A 107 TYR A 111 -1 O VAL A 108 N GLN A 93 SSBOND 1 CYS A 55 CYS A 81 1555 1555 2.13 SSBOND 2 CYS A 72 CYS A 112 1555 1555 2.01 SSBOND 3 CYS A 95 CYS A 134 1555 1555 2.08 LINK ND2 ASN A 73 C1 NAG A 501 1555 1555 1.47 LINK ND2 ASN A 125 C1 NAG A 502 1555 1555 1.43 LINK ND2 ASN A 130 C1 NAG A 503 1555 1555 1.41 LINK C PRO B 32 N NH2 B 33 1555 1555 1.32 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.41 CRYST1 181.288 181.288 181.288 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005516 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005516 0.00000