HEADER HYDROLASE/INHIBITOR 25-JUN-19 6PHR TITLE CRYSTAL STRUCTURE OF MARINOBACTER SUBTERRANI ACETYLPOLYAMINE TITLE 2 AMIDOHYDROLASE (MSAPAH) COMPLEXED WITH 5-[(3-AMINOPROPYL) TITLE 3 AMINO]PENTANE-1-THIOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLPOLYAMINE AMIDOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINOBACTER SUBTERRANI; SOURCE 3 ORGANISM_TAXID: 1658765; SOURCE 4 GENE: MSUB_13096; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACETYLPOLYAMINE AMIDOHYDROLASE, POLYAMINE DEACETYLASE, HYDROLASE, KEYWDS 2 HYDROLASE INHIBITOR, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.OSKO,D.W.CHRISTIANSON REVDAT 4 11-OCT-23 6PHR 1 LINK REVDAT 3 18-DEC-19 6PHR 1 REMARK REVDAT 2 25-SEP-19 6PHR 1 JRNL REVDAT 1 18-SEP-19 6PHR 0 JRNL AUTH J.D.OSKO,B.W.ROOSE,S.A.SHINSKY,D.W.CHRISTIANSON JRNL TITL STRUCTURE AND FUNCTION OF THE ACETYLPOLYAMINE AMIDOHYDROLASE JRNL TITL 2 FROM THE DEEP EARTH HALOPHILEMARINOBACTER SUBTERRANI. JRNL REF BIOCHEMISTRY V. 58 3755 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31436969 JRNL DOI 10.1021/ACS.BIOCHEM.9B00582 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 79658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.8086 - 5.0685 1.00 2673 146 0.1513 0.1445 REMARK 3 2 5.0685 - 4.0232 1.00 2715 105 0.1468 0.1620 REMARK 3 3 4.0232 - 3.5147 0.98 2591 123 0.1567 0.1989 REMARK 3 4 3.5147 - 3.1934 0.99 2662 120 0.1683 0.1969 REMARK 3 5 3.1934 - 2.9645 1.00 2645 146 0.1746 0.1944 REMARK 3 6 2.9645 - 2.7897 1.00 2623 144 0.1737 0.1795 REMARK 3 7 2.7897 - 2.6500 1.00 2646 128 0.1733 0.2059 REMARK 3 8 2.6500 - 2.5346 1.00 2613 129 0.1763 0.1880 REMARK 3 9 2.5346 - 2.4371 0.99 2610 157 0.1747 0.1915 REMARK 3 10 2.4371 - 2.3530 0.99 2624 153 0.1730 0.2122 REMARK 3 11 2.3530 - 2.2794 1.00 2583 156 0.1817 0.2384 REMARK 3 12 2.2794 - 2.2142 0.99 2619 148 0.1726 0.2015 REMARK 3 13 2.2142 - 2.1559 0.99 2600 150 0.1753 0.2371 REMARK 3 14 2.1559 - 2.1033 0.99 2598 163 0.1828 0.2158 REMARK 3 15 2.1033 - 2.0555 0.99 2606 148 0.1872 0.2105 REMARK 3 16 2.0555 - 2.0118 0.99 2601 144 0.1936 0.2208 REMARK 3 17 2.0118 - 1.9715 0.98 2607 127 0.1901 0.2263 REMARK 3 18 1.9715 - 1.9343 0.94 2481 138 0.1892 0.2154 REMARK 3 19 1.9343 - 1.8998 0.97 2537 135 0.1926 0.1918 REMARK 3 20 1.8998 - 1.8676 0.99 2579 161 0.1968 0.2367 REMARK 3 21 1.8676 - 1.8374 0.99 2552 159 0.1972 0.2769 REMARK 3 22 1.8374 - 1.8092 0.99 2658 115 0.2052 0.2563 REMARK 3 23 1.8092 - 1.7826 0.99 2595 133 0.2142 0.2511 REMARK 3 24 1.7826 - 1.7574 0.99 2565 133 0.2239 0.2441 REMARK 3 25 1.7574 - 1.7337 0.99 2650 136 0.2209 0.2658 REMARK 3 26 1.7337 - 1.7112 0.99 2585 130 0.2380 0.2682 REMARK 3 27 1.7112 - 1.6898 0.99 2575 157 0.2429 0.2932 REMARK 3 28 1.6898 - 1.6694 0.99 2601 125 0.2553 0.2812 REMARK 3 29 1.6694 - 1.6500 0.99 2628 128 0.2613 0.2933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 5549 REMARK 3 ANGLE : 0.946 7478 REMARK 3 CHIRALITY : 0.055 797 REMARK 3 PLANARITY : 0.007 988 REMARK 3 DIHEDRAL : 6.422 4404 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79658 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 61.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 4ZUM REMARK 200 REMARK 200 REMARK: ROD-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 20% V/V-PROPANOL, REMARK 280 0.1 MES MONOHYDRATE (PH 6.0), 20% W/V POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 2000, 1:1 RATIO PROTEIN TO PRECIPITANT, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.34000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY B -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -2 CG CD1 CD2 REMARK 470 ARG A 11 CZ NH1 NH2 REMARK 470 LYS A 15 CD CE NZ REMARK 470 GLU A 25 CD OE1 OE2 REMARK 470 ARG A 84 CZ NH1 NH2 REMARK 470 LYS A 264 CE NZ REMARK 470 LYS A 295 CE NZ REMARK 470 LYS A 303 NZ REMARK 470 LYS B 15 CD CE NZ REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 LYS B 29 NZ REMARK 470 ARG B 84 CZ NH1 NH2 REMARK 470 LYS B 103 CE NZ REMARK 470 LYS B 295 NZ REMARK 470 LYS B 306 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 163 38.03 -146.63 REMARK 500 PHE A 170 -54.63 -127.37 REMARK 500 HIS A 227 -37.34 71.30 REMARK 500 ALA A 242 6.47 90.97 REMARK 500 GLU A 320 -115.39 -108.84 REMARK 500 HIS B 13 68.40 -150.68 REMARK 500 ASP B 163 35.23 -148.33 REMARK 500 PHE B 170 -54.72 -124.76 REMARK 500 HIS B 227 -38.95 72.56 REMARK 500 ALA B 242 11.26 81.93 REMARK 500 GLU B 320 -118.17 -111.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 104 OD2 REMARK 620 2 ASP A 106 OD2 94.2 REMARK 620 3 HOH A 655 O 96.9 87.6 REMARK 620 4 HOH B 607 O 90.2 95.6 172.0 REMARK 620 5 HOH B 622 O 96.4 168.8 87.5 88.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 506 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 193 O REMARK 620 2 ASP A 193 OD1 73.0 REMARK 620 3 ASP A 195 O 107.0 101.9 REMARK 620 4 HIS A 197 O 161.7 89.7 82.3 REMARK 620 5 SER A 216 OG 81.4 100.2 157.8 95.9 REMARK 620 6 LEU A 217 O 80.5 151.4 75.3 117.5 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 195 OD1 REMARK 620 2 HIS A 197 ND1 98.1 REMARK 620 3 ASP A 284 OD2 111.7 95.1 REMARK 620 4 SS9 A 502 S11 115.7 114.8 117.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 505 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 206 O REMARK 620 2 ARG A 209 O 77.0 REMARK 620 3 VAL A 212 O 111.8 84.4 REMARK 620 4 TYR A 243 O 159.4 113.2 87.5 REMARK 620 5 HOH A 626 O 88.1 86.6 155.5 75.2 REMARK 620 6 HOH A 666 O 66.1 141.7 117.8 99.3 82.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 606 O REMARK 620 2 HOH A 637 O 90.2 REMARK 620 3 ASP B 104 OD1 123.9 70.2 REMARK 620 4 ASP B 104 OD2 85.1 95.8 47.9 REMARK 620 5 ASP B 106 OD2 98.2 166.6 112.7 95.3 REMARK 620 6 HOH B 633 O 171.3 84.0 60.0 101.9 86.5 REMARK 620 7 HOH B 724 O 90.1 89.0 138.8 173.2 80.6 83.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 506 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 193 O REMARK 620 2 ASP B 193 OD1 71.2 REMARK 620 3 ASP B 195 O 105.5 99.0 REMARK 620 4 HIS B 197 O 157.8 87.7 83.7 REMARK 620 5 SER B 216 OG 82.0 99.2 161.8 95.4 REMARK 620 6 LEU B 217 O 80.7 149.8 77.6 121.3 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 195 OD1 REMARK 620 2 ASP B 195 OD2 52.3 REMARK 620 3 HIS B 197 ND1 99.3 149.5 REMARK 620 4 ASP B 284 OD2 113.3 88.7 94.5 REMARK 620 5 SS9 B 502 S11 114.3 90.3 114.4 117.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 505 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 206 O REMARK 620 2 ARG B 209 O 73.2 REMARK 620 3 VAL B 212 O 113.5 86.7 REMARK 620 4 TYR B 243 O 156.5 111.2 90.0 REMARK 620 5 HOH B 619 O 66.5 137.3 121.7 100.8 REMARK 620 6 HOH B 707 O 84.3 83.1 156.0 73.7 79.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SS9 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SS9 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 506 DBREF1 6PHR A 1 343 UNP A0A0J7JFD7_9ALTE DBREF2 6PHR A A0A0J7JFD7 1 343 DBREF1 6PHR B 1 343 UNP A0A0J7JFD7_9ALTE DBREF2 6PHR B A0A0J7JFD7 1 343 SEQADV 6PHR GLY A -4 UNP A0A0J7JFD EXPRESSION TAG SEQADV 6PHR PRO A -3 UNP A0A0J7JFD EXPRESSION TAG SEQADV 6PHR LEU A -2 UNP A0A0J7JFD EXPRESSION TAG SEQADV 6PHR GLY A -1 UNP A0A0J7JFD EXPRESSION TAG SEQADV 6PHR SER A 0 UNP A0A0J7JFD EXPRESSION TAG SEQADV 6PHR GLY B -4 UNP A0A0J7JFD EXPRESSION TAG SEQADV 6PHR PRO B -3 UNP A0A0J7JFD EXPRESSION TAG SEQADV 6PHR LEU B -2 UNP A0A0J7JFD EXPRESSION TAG SEQADV 6PHR GLY B -1 UNP A0A0J7JFD EXPRESSION TAG SEQADV 6PHR SER B 0 UNP A0A0J7JFD EXPRESSION TAG SEQRES 1 A 348 GLY PRO LEU GLY SER MET LYS THR VAL PHE SER PRO LEU SEQRES 2 A 348 HIS SER ARG ARG HIS VAL LYS THR GLU LEU ASP GLY GLY SEQRES 3 A 348 LEU LEU ILE GLU PRO HIS GLU LYS PRO SER ARG ALA GLU SEQRES 4 A 348 THR ILE LEU ALA ARG VAL LYS ASP GLN ALA LEU GLY GLU SEQRES 5 A 348 ILE LEU GLU PRO GLU GLU PHE GLY LEU GLY PRO VAL LYS SEQRES 6 A 348 ARG VAL HIS THR ALA ASP TYR VAL SER PHE LEU GLU THR SEQRES 7 A 348 CYS TRP ASP GLU TRP VAL ALA ALA GLY LYS ARG GLY GLU SEQRES 8 A 348 ALA ILE PRO THR PHE TRP VAL GLY ARG GLY MET ARG ALA SEQRES 9 A 348 ARG LEU PRO LYS ASP ILE ASP GLY ARG LEU GLY TYR TYR SEQRES 10 A 348 SER LEU GLY ALA ASP THR SER ILE SER ASP GLY THR TRP SEQRES 11 A 348 GLU ALA ALA ARG ALA SER ALA ASN VAL ALA LEU THR ALA SEQRES 12 A 348 GLN LYS LEU VAL ALA GLU GLY GLU ARG ALA ALA PHE ALA SEQRES 13 A 348 LEU CYS ARG PRO PRO GLY HIS HIS ALA HIS ALA ASP VAL SEQRES 14 A 348 PHE GLY GLY TYR CYS PHE PHE ASN ASN ALA ALA ILE ALA SEQRES 15 A 348 ALA GLN ALA PHE ARG ASP GLN GLY TYR GLY LYS VAL ALA SEQRES 16 A 348 VAL LEU ASP VAL ASP PHE HIS HIS GLY ASN GLY THR GLN SEQRES 17 A 348 ALA ILE PHE TYR ASP ARG SER ASP VAL LEU THR ILE SER SEQRES 18 A 348 LEU HIS GLY ASP PRO ASP LEU VAL PHE PRO HIS PHE LEU SEQRES 19 A 348 GLY PHE GLU ASP GLU THR GLY GLU GLY ASP GLY GLU ALA SEQRES 20 A 348 TYR ASN LEU ASN ILE VAL PHE PRO PRO ASP THR PRO PHE SEQRES 21 A 348 SER ILE TRP SER GLN GLY LEU GLU LYS ALA CYS GLU ARG SEQRES 22 A 348 ILE ARG THR PHE ALA PRO ASP ALA LEU VAL VAL ALA LEU SEQRES 23 A 348 GLY VAL ASP THR PHE GLU GLU ASP PRO ILE SER PHE PHE SEQRES 24 A 348 LYS LEU THR SER GLY ASP TYR LEU LYS LEU GLY LYS ARG SEQRES 25 A 348 LEU GLU GLN LEU GLY LEU PRO THR VAL PHE THR MET GLU SEQRES 26 A 348 GLY GLY TYR ASP VAL ASP ALA ILE GLY VAL ASN ALA VAL SEQRES 27 A 348 ASN VAL MET GLN GLY PHE GLU GLY LYS SER SEQRES 1 B 348 GLY PRO LEU GLY SER MET LYS THR VAL PHE SER PRO LEU SEQRES 2 B 348 HIS SER ARG ARG HIS VAL LYS THR GLU LEU ASP GLY GLY SEQRES 3 B 348 LEU LEU ILE GLU PRO HIS GLU LYS PRO SER ARG ALA GLU SEQRES 4 B 348 THR ILE LEU ALA ARG VAL LYS ASP GLN ALA LEU GLY GLU SEQRES 5 B 348 ILE LEU GLU PRO GLU GLU PHE GLY LEU GLY PRO VAL LYS SEQRES 6 B 348 ARG VAL HIS THR ALA ASP TYR VAL SER PHE LEU GLU THR SEQRES 7 B 348 CYS TRP ASP GLU TRP VAL ALA ALA GLY LYS ARG GLY GLU SEQRES 8 B 348 ALA ILE PRO THR PHE TRP VAL GLY ARG GLY MET ARG ALA SEQRES 9 B 348 ARG LEU PRO LYS ASP ILE ASP GLY ARG LEU GLY TYR TYR SEQRES 10 B 348 SER LEU GLY ALA ASP THR SER ILE SER ASP GLY THR TRP SEQRES 11 B 348 GLU ALA ALA ARG ALA SER ALA ASN VAL ALA LEU THR ALA SEQRES 12 B 348 GLN LYS LEU VAL ALA GLU GLY GLU ARG ALA ALA PHE ALA SEQRES 13 B 348 LEU CYS ARG PRO PRO GLY HIS HIS ALA HIS ALA ASP VAL SEQRES 14 B 348 PHE GLY GLY TYR CYS PHE PHE ASN ASN ALA ALA ILE ALA SEQRES 15 B 348 ALA GLN ALA PHE ARG ASP GLN GLY TYR GLY LYS VAL ALA SEQRES 16 B 348 VAL LEU ASP VAL ASP PHE HIS HIS GLY ASN GLY THR GLN SEQRES 17 B 348 ALA ILE PHE TYR ASP ARG SER ASP VAL LEU THR ILE SER SEQRES 18 B 348 LEU HIS GLY ASP PRO ASP LEU VAL PHE PRO HIS PHE LEU SEQRES 19 B 348 GLY PHE GLU ASP GLU THR GLY GLU GLY ASP GLY GLU ALA SEQRES 20 B 348 TYR ASN LEU ASN ILE VAL PHE PRO PRO ASP THR PRO PHE SEQRES 21 B 348 SER ILE TRP SER GLN GLY LEU GLU LYS ALA CYS GLU ARG SEQRES 22 B 348 ILE ARG THR PHE ALA PRO ASP ALA LEU VAL VAL ALA LEU SEQRES 23 B 348 GLY VAL ASP THR PHE GLU GLU ASP PRO ILE SER PHE PHE SEQRES 24 B 348 LYS LEU THR SER GLY ASP TYR LEU LYS LEU GLY LYS ARG SEQRES 25 B 348 LEU GLU GLN LEU GLY LEU PRO THR VAL PHE THR MET GLU SEQRES 26 B 348 GLY GLY TYR ASP VAL ASP ALA ILE GLY VAL ASN ALA VAL SEQRES 27 B 348 ASN VAL MET GLN GLY PHE GLU GLY LYS SER HET MES A 501 12 HET SS9 A 502 11 HET ZN A 503 1 HET MG A 504 1 HET K A 505 1 HET K A 506 1 HET MES B 501 12 HET SS9 B 502 11 HET ZN B 503 1 HET MG B 504 1 HET K B 505 1 HET K B 506 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM SS9 5-[(3-AMINOPROPYL)AMINO]PENTANE-1-THIOL HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION FORMUL 3 MES 2(C6 H13 N O4 S) FORMUL 4 SS9 2(C8 H20 N2 S) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 MG 2(MG 2+) FORMUL 7 K 4(K 1+) FORMUL 15 HOH *293(H2 O) HELIX 1 AA1 SER A 6 ARG A 12 5 7 HELIX 2 AA2 PRO A 30 GLN A 43 1 14 HELIX 3 AA3 LEU A 56 ARG A 61 1 6 HELIX 4 AA4 THR A 64 ALA A 81 1 18 HELIX 5 AA5 ASP A 104 TYR A 112 1 9 HELIX 6 AA6 GLY A 123 GLU A 144 1 22 HELIX 7 AA7 ASN A 172 GLN A 184 1 13 HELIX 8 AA8 GLY A 199 PHE A 206 1 8 HELIX 9 AA9 GLU A 237 GLU A 241 5 5 HELIX 10 AB1 PRO A 254 ALA A 273 1 20 HELIX 11 AB2 THR A 297 GLN A 310 1 14 HELIX 12 AB3 ASP A 324 GLU A 340 1 17 HELIX 13 AB4 SER B 6 ARG B 12 5 7 HELIX 14 AB5 PRO B 30 GLN B 43 1 14 HELIX 15 AB6 LEU B 56 ARG B 61 1 6 HELIX 16 AB7 THR B 64 ALA B 81 1 18 HELIX 17 AB8 ASP B 104 TYR B 112 1 9 HELIX 18 AB9 GLY B 123 GLU B 144 1 22 HELIX 19 AC1 ASN B 172 GLN B 184 1 13 HELIX 20 AC2 GLY B 199 PHE B 206 1 8 HELIX 21 AC3 GLU B 237 GLU B 241 5 5 HELIX 22 AC4 PRO B 254 ALA B 273 1 20 HELIX 23 AC5 THR B 297 GLN B 310 1 14 HELIX 24 AC6 ASP B 324 GLU B 340 1 17 SHEET 1 AA1 8 ILE A 48 LEU A 49 0 SHEET 2 AA1 8 LYS A 2 VAL A 4 1 N THR A 3 O LEU A 49 SHEET 3 AA1 8 ALA A 148 ALA A 151 1 O PHE A 150 N VAL A 4 SHEET 4 AA1 8 THR A 315 MET A 319 1 O PHE A 317 N ALA A 151 SHEET 5 AA1 8 ALA A 276 LEU A 281 1 N VAL A 279 O VAL A 316 SHEET 6 AA1 8 VAL A 189 ASP A 193 1 N LEU A 192 O VAL A 278 SHEET 7 AA1 8 VAL A 212 GLY A 219 1 O LEU A 213 N VAL A 191 SHEET 8 AA1 8 ASN A 244 PHE A 249 1 O ILE A 247 N SER A 216 SHEET 1 AA2 2 GLU A 17 ASP A 19 0 SHEET 2 AA2 2 LEU A 22 ILE A 24 -1 O ILE A 24 N GLU A 17 SHEET 1 AA3 8 ILE B 48 LEU B 49 0 SHEET 2 AA3 8 LYS B 2 VAL B 4 1 N THR B 3 O LEU B 49 SHEET 3 AA3 8 ALA B 148 ALA B 151 1 O PHE B 150 N VAL B 4 SHEET 4 AA3 8 THR B 315 MET B 319 1 O PHE B 317 N ALA B 151 SHEET 5 AA3 8 ALA B 276 LEU B 281 1 N VAL B 279 O VAL B 316 SHEET 6 AA3 8 VAL B 189 ASP B 193 1 N ALA B 190 O VAL B 278 SHEET 7 AA3 8 VAL B 212 GLY B 219 1 O LEU B 213 N VAL B 191 SHEET 8 AA3 8 ASN B 244 PHE B 249 1 O ILE B 247 N SER B 216 SHEET 1 AA4 2 GLU B 17 ASP B 19 0 SHEET 2 AA4 2 LEU B 22 ILE B 24 -1 O LEU B 22 N ASP B 19 LINK OD2 ASP A 104 MG MG A 504 1555 1555 2.20 LINK OD2 ASP A 106 MG MG A 504 1555 1555 2.25 LINK O ASP A 193 K K A 506 1555 1555 2.91 LINK OD1 ASP A 193 K K A 506 1555 1555 2.40 LINK OD1 ASP A 195 ZN ZN A 503 1555 1555 2.12 LINK O ASP A 195 K K A 506 1555 1555 2.37 LINK ND1 HIS A 197 ZN ZN A 503 1555 1555 2.23 LINK O HIS A 197 K K A 506 1555 1555 2.64 LINK O PHE A 206 K K A 505 1555 1555 2.64 LINK O ARG A 209 K K A 505 1555 1555 2.80 LINK O VAL A 212 K K A 505 1555 1555 2.73 LINK OG SER A 216 K K A 506 1555 1555 2.70 LINK O LEU A 217 K K A 506 1555 1555 2.39 LINK O TYR A 243 K K A 505 1555 1555 2.98 LINK OD2 ASP A 284 ZN ZN A 503 1555 1555 2.01 LINK S11 SS9 A 502 ZN ZN A 503 1555 1555 2.45 LINK MG MG A 504 O HOH A 655 1555 1555 2.35 LINK MG MG A 504 O HOH B 607 1555 1555 2.31 LINK MG MG A 504 O HOH B 622 1555 1555 2.30 LINK K K A 505 O HOH A 626 1555 1555 2.66 LINK K K A 505 O HOH A 666 1555 1555 3.01 LINK O HOH A 606 MG MG B 504 1555 1555 2.33 LINK O HOH A 637 MG MG B 504 1555 1555 2.34 LINK OD1 ASP B 104 MG MG B 504 1555 1555 2.92 LINK OD2 ASP B 104 MG MG B 504 1555 1555 2.29 LINK OD2 ASP B 106 MG MG B 504 1555 1555 2.27 LINK O ASP B 193 K K B 506 1555 1555 2.98 LINK OD1 ASP B 193 K K B 506 1555 1555 2.42 LINK OD1 ASP B 195 ZN ZN B 503 1555 1555 2.10 LINK OD2 ASP B 195 ZN ZN B 503 1555 1555 2.67 LINK O ASP B 195 K K B 506 1555 1555 2.32 LINK ND1 HIS B 197 ZN ZN B 503 1555 1555 2.33 LINK O HIS B 197 K K B 506 1555 1555 2.65 LINK O PHE B 206 K K B 505 1555 1555 2.74 LINK O ARG B 209 K K B 505 1555 1555 2.77 LINK O VAL B 212 K K B 505 1555 1555 2.64 LINK OG SER B 216 K K B 506 1555 1555 2.73 LINK O LEU B 217 K K B 506 1555 1555 2.38 LINK O TYR B 243 K K B 505 1555 1555 2.87 LINK OD2 ASP B 284 ZN ZN B 503 1555 1555 2.03 LINK S11 SS9 B 502 ZN ZN B 503 1555 1555 2.43 LINK MG MG B 504 O HOH B 633 1555 1555 2.36 LINK MG MG B 504 O HOH B 724 1555 1555 2.33 LINK K K B 505 O HOH B 619 1555 1555 2.94 LINK K K B 505 O HOH B 707 1555 1555 2.65 CISPEP 1 ARG A 154 PRO A 155 0 6.74 CISPEP 2 PHE A 225 PRO A 226 0 10.06 CISPEP 3 ARG B 154 PRO B 155 0 5.12 CISPEP 4 PHE B 225 PRO B 226 0 12.20 SITE 1 AC1 9 HIS A 197 VAL A 224 PHE A 225 ILE A 291 SITE 2 AC1 9 SER A 292 SS9 A 502 HOH A 606 HOH A 622 SITE 3 AC1 9 HOH A 686 SITE 1 AC2 14 GLU A 17 LEU A 18 ASP A 19 ASP A 117 SITE 2 AC2 14 HIS A 158 HIS A 159 GLY A 167 TYR A 168 SITE 3 AC2 14 ASP A 195 HIS A 197 PHE A 225 TYR A 323 SITE 4 AC2 14 MES A 501 ZN A 503 SITE 1 AC3 4 ASP A 195 HIS A 197 ASP A 284 SS9 A 502 SITE 1 AC4 5 ASP A 104 ASP A 106 HOH A 655 HOH B 607 SITE 2 AC4 5 HOH B 622 SITE 1 AC5 6 PHE A 206 ARG A 209 VAL A 212 TYR A 243 SITE 2 AC5 6 HOH A 626 HOH A 666 SITE 1 AC6 5 ASP A 193 ASP A 195 HIS A 197 SER A 216 SITE 2 AC6 5 LEU A 217 SITE 1 AC7 10 HIS B 197 VAL B 224 PHE B 225 ILE B 291 SITE 2 AC7 10 SER B 292 PHE B 293 SS9 B 502 HOH B 606 SITE 3 AC7 10 HOH B 607 HOH B 713 SITE 1 AC8 13 GLU B 17 LEU B 18 ASP B 19 ASP B 117 SITE 2 AC8 13 HIS B 158 HIS B 159 GLY B 167 TYR B 168 SITE 3 AC8 13 ASP B 195 HIS B 197 TYR B 323 MES B 501 SITE 4 AC8 13 ZN B 503 SITE 1 AC9 4 ASP B 195 HIS B 197 ASP B 284 SS9 B 502 SITE 1 AD1 6 HOH A 606 HOH A 637 ASP B 104 ASP B 106 SITE 2 AD1 6 HOH B 633 HOH B 724 SITE 1 AD2 6 PHE B 206 ARG B 209 VAL B 212 TYR B 243 SITE 2 AD2 6 HOH B 619 HOH B 707 SITE 1 AD3 5 ASP B 193 ASP B 195 HIS B 197 SER B 216 SITE 2 AD3 5 LEU B 217 CRYST1 45.874 120.680 65.360 90.00 109.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021799 0.000000 0.007544 0.00000 SCALE2 0.000000 0.008286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016190 0.00000