HEADER TRANSFERASE 26-JUN-19 6PI9 TITLE CRYSTAL STRUCTURE OF 16S RRNA METHYLTRANSFERASE RMTF IN COMPLEX WITH TITLE 2 S-ADENOSYL-L-HOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 16S RRNA (GUANINE(1405)-N(7))-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RMTF; COMPND 5 EC: 2.1.1.179; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: RMTF, PN11X00042NDM_104; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS METHYLTRANSFERASE DOMAIN, METHYLTRANSFERASE, PLASMID, TRANSFERASE, KEYWDS 2 16S RRNA, ANTIBIOTIC RESISTANCE, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,Y.KIM,E.EVDOKIMOVA,R.DI LEO,C.SEMPER,A.SAVCHENKO, AUTHOR 2 K.J.F.SATCHELL,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 4 11-OCT-23 6PI9 1 REMARK REVDAT 3 18-DEC-19 6PI9 1 REMARK REVDAT 2 21-AUG-19 6PI9 1 TITLE REVDAT 1 10-JUL-19 6PI9 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF 16S RRNA METHYLASE RMTF IN COMPLEX WITH JRNL TITL 2 S-ADENOSYL-L-HOMOCYSTEINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15_3448: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8327 - 3.8458 1.00 2936 153 0.1685 0.2023 REMARK 3 2 3.8458 - 3.0535 1.00 2777 147 0.1801 0.2521 REMARK 3 3 3.0535 - 2.6678 1.00 2746 145 0.2165 0.2388 REMARK 3 4 2.6678 - 2.4240 1.00 2702 141 0.2138 0.2542 REMARK 3 5 2.4240 - 2.2503 1.00 2727 144 0.2031 0.2734 REMARK 3 6 2.2503 - 2.1177 1.00 2693 142 0.2124 0.2564 REMARK 3 7 2.1177 - 2.0117 1.00 2688 141 0.2176 0.2670 REMARK 3 8 2.0117 - 1.9241 1.00 2696 142 0.2392 0.2896 REMARK 3 9 1.9241 - 1.8501 1.00 2658 140 0.3121 0.3533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2115 REMARK 3 ANGLE : 1.388 2870 REMARK 3 CHIRALITY : 0.094 328 REMARK 3 PLANARITY : 0.009 372 REMARK 3 DIHEDRAL : 21.565 815 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1294 -26.0622 -12.1868 REMARK 3 T TENSOR REMARK 3 T11: 0.2676 T22: 0.7531 REMARK 3 T33: 0.3646 T12: -0.0146 REMARK 3 T13: -0.0345 T23: 0.0866 REMARK 3 L TENSOR REMARK 3 L11: 2.9593 L22: 1.4614 REMARK 3 L33: 2.9246 L12: 1.6239 REMARK 3 L13: 0.3741 L23: -1.0314 REMARK 3 S TENSOR REMARK 3 S11: -0.2199 S12: 0.4491 S13: 0.2702 REMARK 3 S21: -0.2566 S22: 0.2821 S23: -0.3527 REMARK 3 S31: 0.1748 S32: 0.5347 S33: 0.0134 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6803 -33.7082 -13.5562 REMARK 3 T TENSOR REMARK 3 T11: 0.3432 T22: 0.6416 REMARK 3 T33: 0.3070 T12: -0.0562 REMARK 3 T13: 0.0287 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 0.6905 L22: 1.6935 REMARK 3 L33: 0.4448 L12: -0.4129 REMARK 3 L13: 0.1777 L23: 0.4357 REMARK 3 S TENSOR REMARK 3 S11: -0.3399 S12: 0.2081 S13: -0.1791 REMARK 3 S21: -0.1089 S22: 0.1167 S23: -0.0711 REMARK 3 S31: 0.4875 S32: 0.4630 S33: -0.0120 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6115 -26.7631 -16.3134 REMARK 3 T TENSOR REMARK 3 T11: 0.3472 T22: 0.6581 REMARK 3 T33: 0.3613 T12: -0.0201 REMARK 3 T13: -0.0718 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.5855 L22: 0.9300 REMARK 3 L33: 2.6540 L12: -1.2011 REMARK 3 L13: -1.9211 L23: 1.0489 REMARK 3 S TENSOR REMARK 3 S11: 0.5815 S12: 1.0396 S13: 0.7309 REMARK 3 S21: -0.7704 S22: -0.1066 S23: -0.1025 REMARK 3 S31: -1.2220 S32: 0.1043 S33: 0.0933 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0799 -10.3050 3.3582 REMARK 3 T TENSOR REMARK 3 T11: 0.6537 T22: 0.6388 REMARK 3 T33: 1.0544 T12: -0.0003 REMARK 3 T13: -0.0960 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 2.4673 L22: 1.0151 REMARK 3 L33: 2.9433 L12: 0.3116 REMARK 3 L13: 1.7806 L23: 0.0955 REMARK 3 S TENSOR REMARK 3 S11: -0.4706 S12: 0.1011 S13: 1.7599 REMARK 3 S21: -0.4888 S22: -0.0857 S23: 0.2892 REMARK 3 S31: -1.3312 S32: 0.4271 S33: -0.1112 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8823 -21.8829 11.7035 REMARK 3 T TENSOR REMARK 3 T11: 0.3414 T22: 0.7756 REMARK 3 T33: 0.4080 T12: 0.0156 REMARK 3 T13: -0.0605 T23: -0.1652 REMARK 3 L TENSOR REMARK 3 L11: 0.3400 L22: 0.4379 REMARK 3 L33: 0.1676 L12: 0.0039 REMARK 3 L13: -0.0456 L23: -0.3104 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: -1.0384 S13: 1.1121 REMARK 3 S21: 0.4762 S22: -0.1997 S23: -0.1878 REMARK 3 S31: -0.6585 S32: -0.3590 S33: 0.0009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4672 -24.4410 6.8701 REMARK 3 T TENSOR REMARK 3 T11: 0.2235 T22: 0.4746 REMARK 3 T33: 0.2742 T12: 0.0392 REMARK 3 T13: -0.0139 T23: -0.0489 REMARK 3 L TENSOR REMARK 3 L11: 6.7541 L22: 1.6854 REMARK 3 L33: 3.0318 L12: 0.3147 REMARK 3 L13: 1.3664 L23: 1.2389 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: -0.8073 S13: 0.4811 REMARK 3 S21: 0.1951 S22: 0.0953 S23: -0.0640 REMARK 3 S31: 0.0615 S32: 0.2675 S33: -0.0153 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1896 -28.3220 -7.1681 REMARK 3 T TENSOR REMARK 3 T11: 0.3974 T22: 0.4182 REMARK 3 T33: 0.4871 T12: -0.0011 REMARK 3 T13: -0.0314 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.4924 L22: 0.6685 REMARK 3 L33: 1.3765 L12: 0.2807 REMARK 3 L13: 0.1632 L23: 0.6620 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: 0.2726 S13: 0.3694 REMARK 3 S21: -0.0635 S22: -0.0146 S23: 0.8568 REMARK 3 S31: -0.7320 S32: -0.1543 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1432 -29.8319 6.6585 REMARK 3 T TENSOR REMARK 3 T11: 0.2754 T22: 0.6337 REMARK 3 T33: 0.3922 T12: 0.0095 REMARK 3 T13: 0.0486 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 3.3415 L22: 2.2760 REMARK 3 L33: 2.9105 L12: 0.4963 REMARK 3 L13: 0.6274 L23: 2.6272 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: -1.0829 S13: 0.1293 REMARK 3 S21: 0.5117 S22: 0.0398 S23: 0.2673 REMARK 3 S31: 0.1700 S32: -0.8951 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PI9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242529. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26247 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 1.62600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3FRH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.8, 2 MM S-ADENOSYL-L-METHIONINE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.46300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.23150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.69450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.46300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.69450 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 24.23150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -24.23150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 559 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 588 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 55 -38.48 -142.11 REMARK 500 ASP A 78 -50.41 -121.14 REMARK 500 ARG A 204 49.70 -97.53 REMARK 500 ARG A 215 40.84 -77.26 REMARK 500 LEU A 217 32.95 -142.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 595 DISTANCE = 6.55 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP50910 RELATED DB: TARGETTRACK DBREF 6PI9 A 1 259 UNP I1YZZ5 I1YZZ5_KLEPN 1 259 SEQADV 6PI9 GLY A 0 UNP I1YZZ5 EXPRESSION TAG SEQRES 1 A 260 GLY MET ASP GLU ARG ALA GLN ALA ALA LEU ASP ALA LEU SEQRES 2 A 260 LEU SER ALA LYS ASN LEU ARG ASP VAL CYS PRO GLU THR SEQRES 3 A 260 VAL ARG ARG VAL PHE MET GLU LEU LEU PRO ARG TYR ARG SEQRES 4 A 260 LYS PRO LYS ASP ALA GLU LYS ALA ALA ARG THR HIS LEU SEQRES 5 A 260 HIS GLN ILE THR GLY ALA PHE MET THR ALA ASP ALA GLN SEQRES 6 A 260 LYS LYS ALA ARG ALA LEU LEU ALA ARG TRP ASN GLU GLY SEQRES 7 A 260 ASP GLU SER ALA LEU ALA ALA ALA LEU SER LEU HIS ALA SEQRES 8 A 260 SER THR ARG GLU ARG LEU PRO GLY ALA ASP GLU TRP MET SEQRES 9 A 260 ARG ARG VAL SER PRO PHE LEU GLY ALA ASP ALA ARG VAL SEQRES 10 A 260 LEU ASP LEU ALA CYS GLY LEU ASN PRO ILE LEU LEU GLY SEQRES 11 A 260 SER MET GLY VAL THR ASN ALA LEU GLY MET ASP ILE HIS SEQRES 12 A 260 LEU GLY CYS VAL ARG LEU VAL ASN GLU THR ALA ARG ALA SEQRES 13 A 260 ARG GLY TRP HIS THR ARG ALA ARG ALA CYS ASP LEU LEU SEQRES 14 A 260 SER GLU ILE PRO ALA GLU GLU ALA ASP ALA ALA LEU LEU SEQRES 15 A 260 MET LYS LEU LEU PRO VAL LEU GLU ALA GLN LYS THR GLY SEQRES 16 A 260 ARG ALA ALA GLU LEU LEU ALA SER LEU ARG ALA PRO ARG SEQRES 17 A 260 LEU VAL VAL THR PHE PRO THR ARG THR LEU GLY GLY ARG SEQRES 18 A 260 GLY VAL GLY MET GLU LYS HIS TYR ALA ASP TRP PHE GLU SEQRES 19 A 260 ARG ILE LEU PRO ASP THR LEU SER VAL ARG ASP ARG PHE SEQRES 20 A 260 THR VAL SER ASP GLU LEU VAL TYR LEU VAL GLU ARG THR HET SAH A 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 HOH *195(H2 O) HELIX 1 AA1 ASP A 2 SER A 14 1 13 HELIX 2 AA2 ALA A 15 ARG A 19 5 5 HELIX 3 AA3 CYS A 22 LEU A 34 1 13 HELIX 4 AA4 PRO A 35 TYR A 37 5 3 HELIX 5 AA5 LYS A 39 THR A 55 1 17 HELIX 6 AA6 GLY A 56 MET A 59 5 4 HELIX 7 AA7 ALA A 61 ASN A 75 1 15 HELIX 8 AA8 ALA A 81 SER A 87 1 7 HELIX 9 AA9 HIS A 89 LEU A 96 1 8 HELIX 10 AB1 GLY A 98 GLY A 111 1 14 HELIX 11 AB2 LEU A 123 MET A 131 1 9 HELIX 12 AB3 HIS A 142 GLY A 157 1 16 HELIX 13 AB4 LEU A 184 LYS A 192 1 9 HELIX 14 AB5 GLY A 194 LEU A 203 1 10 HELIX 15 AB6 GLY A 223 LEU A 236 1 14 SHEET 1 AA1 7 ARG A 161 ALA A 164 0 SHEET 2 AA1 7 ALA A 136 ASP A 140 1 N GLY A 138 O ARG A 161 SHEET 3 AA1 7 VAL A 116 LEU A 119 1 N VAL A 116 O LEU A 137 SHEET 4 AA1 7 ALA A 178 MET A 182 1 O LEU A 180 N LEU A 117 SHEET 5 AA1 7 ARG A 207 PRO A 213 1 O VAL A 209 N LEU A 181 SHEET 6 AA1 7 GLU A 251 ARG A 258 -1 O LEU A 252 N PHE A 212 SHEET 7 AA1 7 LEU A 240 THR A 247 -1 N ARG A 243 O LEU A 255 SITE 1 AC1 15 ILE A 54 THR A 55 SER A 91 ARG A 95 SITE 2 AC1 15 ALA A 120 CYS A 121 ASP A 140 ILE A 141 SITE 3 AC1 15 CYS A 165 ASP A 166 LEU A 167 MET A 182 SITE 4 AC1 15 GLN A 191 HOH A 407 HOH A 452 CRYST1 77.637 77.637 96.926 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012880 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010317 0.00000